Luciferin-regenerating enzyme solved by SAD using synchrotron radiation at room temperature

Summary for 5D9D

Related5D9B 5D9C
DescriptorLuciferin regenerating enzyme, MAGNESIUM ION, MERCURY (II) ION, ... (5 entities in total)
Functional Keywordsbeta-prooeller, hydrolase
Biological sourcePhotinus pyralis (Common eastern firefly)
Total number of polymer chains1
Total molecular weight34945.96
Primary citation
Yamashita, K.,Pan, D.,Okuda, T.,Sugahara, M.,Kodan, A.,Yamaguchi, T.,Murai, T.,Gomi, K.,Kajiyama, N.,Mizohata, E.,Suzuki, M.,Nango, E.,Tono, K.,Joti, Y.,Kameshima, T.,Park, J.,Song, C.,Hatsui, T.,Yabashi, M.,Iwata, S.,Kato, H.,Ago, H.,Yamamoto, M.,Nakatsu, T.
An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography.
Sci Rep, 5:14017-14017, 2015
PubMed: 26360462 (PDB entries with the same primary citation)
DOI: 10.1038/srep14017
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.176400.8%1.6%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution