PDB: 217686 件ウェブページステータス検索Chemie searchBIRD

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5TA7	Crystal structure of BuGH117Bwt 分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Glycoside Hydrolase, ... 著者 Pluvinage, B, Boraston, A.B. 登録日 2016-09-09 公開日 2017-09-13 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Molecular basis of an agarose metabolic pathway acquired by a human intestinal symbiont. Nat Commun, 9, 2018
4P31	Crystal structure of a selenomethionine derivative of E. coli LptB in complex with ADP-Magensium 分子名称: ADENOSINE-5'-DIPHOSPHATE, Lipopolysaccharide export system ATP-binding protein LptB, MAGNESIUM ION 著者 Sherman, D.J, Lazarus, M.B, Murphy, L, Liu, C, Walker, S, Ruiz, N, Kahne, D. 登録日 2014-03-05 公開日 2014-03-26 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Decoupling catalytic activity from biological function of the ATPase that powers lipopolysaccharide transport. Proc.Natl.Acad.Sci.USA, 111, 2014
7QTL	Influenza A/H7N9 polymerase elongation complex 分子名称: 3' vRNA, 5' vRNA, 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, ... 著者 Cusack, S, Kouba, T. 登録日 2022-01-14 公開日 2022-12-28 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (2.48 Å) 主引用文献 Direct observation of backtracking by influenza A and B polymerases upon consecutive incorporation of the nucleoside analog T1106. Cell Rep, 42, 2023
4PTW	Halothermothrix orenii beta-glucosidase A, 2-deoxy-2-fluoro-glucose complex 分子名称: 2-deoxy-2-fluoro-alpha-D-glucopyranose, Glycoside hydrolase family 1, TETRAETHYLENE GLYCOL 著者 Hassan, N, Nguyen, T.H, Kori, L.D, Patel, B.K.C, Haltrich, D, Divne, C, Tan, T.C. 登録日 2014-03-11 公開日 2014-09-24 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Biochemical and structural characterization of a thermostable beta-glucosidase from Halothermothrix orenii for galacto-oligosaccharide synthesis. Appl.Microbiol.Biotechnol., 99, 2015
5SX7	Crystal structure of catalase-peroxidase KatG of B. pseudomallei at pH 8.5 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Catalase-peroxidase, ... 著者 Loewen, P.C. 登録日 2016-08-09 公開日 2016-08-31 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Roles for Arg426 and Trp111 in the modulation of NADH oxidase activity of the catalase-peroxidase KatG from Burkholderia pseudomallei inferred from pH-induced structural changes. Biochemistry, 45, 2006
7QNS	Peptide VYEKKP in complex with human cathepsin V C25S mutant 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, Cathepsin L2, ... 著者 Loboda, J, Sosnowski, P, Tusar, L, Vidmar, R, Vizovisek, M, Horvat, J, Kosec, G, Impens, F, Demol, H, Turk, B, Gevaert, K, Turk, D. 登録日 2021-12-22 公開日 2023-01-18 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Peptide VYEKKP in complex with human cathepsin V C25S mutant To Be Published
4ZCW	Structure of Human Enolase 2 in complex with SF2312 分子名称: Gamma-enolase, MAGNESIUM ION, [(3S,5S)-1,5-dihydroxy-2-oxopyrrolidin-3-yl]phosphonic acid 著者 Leonard, P.G, Maxwell, D, Czako, B, Muller, F.L. 登録日 2015-04-16 公開日 2016-07-20 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.992 Å) 主引用文献 SF2312 is a natural phosphonate inhibitor of enolase. Nat.Chem.Biol., 12, 2016
4P1J	Crystal structure of wild type Hypocrea jecorina Cel7a in a hexagonal crystal form 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Exoglucanase 1, SAMARIUM (III) ION, ... 著者 Bodenheimer, A.B, Cuneo, M.J, Swartz, P.D, Myles, D.A, Meilleur, F. 登録日 2014-02-26 公開日 2015-03-25 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.62 Å) 主引用文献 Crystal structure of wild type Hypocrea jecorina Cel7a in a hexagonal crystal form To Be Published
3JY1	Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from C) 分子名称: DNA (5'-D(*AP*AP*AP*GP*CP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*GP*(3DR)P*GP*GP*CP*TP*T)-3'), alkylpurine DNA glycosylase AlkD 著者 Rubinson, E.H, Eichman, B.F. 登録日 2009-09-21 公開日 2010-09-22 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.754 Å) 主引用文献 An unprecedented nucleic acid capture mechanism for excision of DNA damage. Nature, 468, 2010
4P9P	Structure of NavMS in complex with channel blocking compound 分子名称: BROMIDE ION, DODECAETHYLENE GLYCOL, HEGA-10, ... 著者 Naylor, C.E, Bagneris, C, Wallace, B.A. 登録日 2014-04-04 公開日 2014-06-04 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.91 Å) 主引用文献 Prokaryotic NavMs channel as a structural and functional model for eukaryotic sodium channel antagonism. Proc.Natl.Acad.Sci.USA, 111, 2014
5G09	The crystal structure of a S-selective transaminase from Bacillus megaterium bound with R-alpha-methylbenzylamine 分子名称: DI(HYDROXYETHYL)ETHER, PENTAETHYLENE GLYCOL, TETRAETHYLENE GLYCOL, ... 著者 van Oosterwijk, N, Willies, S, Hekelaar, J, Terwisscha van Scheltinga, A.C, Turner, N.J, Dijkstra, B.W. 登録日 2016-03-17 公開日 2016-07-27 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural Basis of Substrate Range and Enantioselectivity of Two S-Selective Omega- Transaminases Biochemistry, 55, 2016
4PA3	Structure of NavMS in complex with channel blocking compound 分子名称: BROMIDE ION, DODECAETHYLENE GLYCOL, HEGA-10, ... 著者 Naylor, C.E, Bagneris, C, Wallace, B.A. 登録日 2014-04-07 公開日 2014-06-04 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.25 Å) 主引用文献 Prokaryotic NavMs channel as a structural and functional model for eukaryotic sodium channel antagonism. Proc.Natl.Acad.Sci.USA, 111, 2014
7K7K	Structure of the EPEC type III secretion injectisome EspA filament 分子名称: Translocon EspA 著者 Lyons, B.J.E, Atkinson, C.E, Strynadka, N.C.J. 登録日 2020-09-23 公開日 2020-12-30 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.56 Å) 主引用文献 Cryo-EM structure of the EspA filament from enteropathogenic Escherichia coli: Revealing the mechanism of effector translocation in the T3SS. Structure, 29, 2021
7QO2	Peptide GAKSAA in complex with human cathepsin V C25A mutant 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, Cathepsin L2, ... 著者 Loboda, J, Sosnowski, P, Tusar, L, Vidmar, R, Vizovisek, M, Horvat, J, Kosec, G, Impens, F, Demol, H, Turk, B, Gevaert, K, Turk, D. 登録日 2021-12-23 公開日 2023-01-18 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.77 Å) 主引用文献 Peptide GAKSAA in complex with human cathepsin V C25A mutant To Be Published
5LI9	Structure of a nucleotide-bound form of PKCiota core kinase domain 分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ... 著者 Ivanova, M.E, Purkiss, A.G, McDonald, N.Q. 登録日 2016-07-14 公開日 2016-09-14 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.79 Å) 主引用文献 aPKC Inhibition by Par3 CR3 Flanking Regions Controls Substrate Access and Underpins Apical-Junctional Polarization. Dev.Cell, 38, 2016
6IWB	Crystal structure of a computationally designed protein (LD3) in complex with BCL-2 分子名称: Apolipoprotein E, Apoptosis regulator Bcl-2,Apoptosis regulator Bcl-2, SULFATE ION 著者 Kim, S, Kwak, M.J, Oh, B.-H, Correia, B.E, Gainza, P. 登録日 2018-12-05 公開日 2019-12-11 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 A computationally designed chimeric antigen receptor provides a small-molecule safety switch for T-cell therapy. Nat.Biotechnol., 38, 2020
6T2Z	Streptavidin variants harbouring an artificial organocatalyst based cofactor 分子名称: 5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-(1-pyridin-4-ylpiperidin-4-yl)pentanamide, Streptavidin 著者 Lechner, H, Hocker, B. 登録日 2019-10-10 公開日 2020-11-18 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 An Artificial Cofactor Catalyzing the Baylis-Hillman Reaction with Designed Streptavidin as Protein Host*. Chembiochem, 22, 2021
7JN1	Sheep Connexin-46 at 2.5 angstroms resolution, Lipid Class 3 分子名称: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, Gap junction alpha-3 protein 著者 Flores, J.A, Haddad, B.G, Dolan, K.D, Myers, J.B, Yoshioka, C.C, Copperman, J, Zuckerman, D.M, Reichow, S.L. 登録日 2020-08-03 公開日 2020-09-09 実験手法 ELECTRON MICROSCOPY (2.5 Å) 主引用文献 Connexin-46/50 in a dynamic lipid environment resolved by CryoEM at 1.9 angstrom. Nat Commun, 11, 2020
4RJK	Acetolactate synthase from Bacillus subtilis bound to LThDP - crystal form II 分子名称: 3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-2-(1-CARBOXY-1-HYDROXYETHYL)-5-(2-{[HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}ETHYL)-4-METHYL-1,3-THIAZOL-3-IUM, Acetolactate synthase, MAGNESIUM ION, ... 著者 Sommer, B, von Moeller, H, Haack, M, Qoura, F, Langner, C, Bourenkov, G, Garbe, D, Brueck, T, Loll, B. 登録日 2014-10-09 公開日 2014-10-22 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Detailed Structure-Function Correlations of Bacillus subtilis Acetolactate Synthase. Chembiochem, 16, 2015
8CQF	Crystal Structure of a Chimeric Alpha-Amylase from Pseudoalteromonas Haloplanktis Complexed with Rearranged Acarbose 分子名称: 1,2-ETHANEDIOL, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-1,5-anhydro-D-glucitol, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ... 著者 Skagseth, S, Griese, J.J, Lund, B.A, van der Ent, F, Aqvist, J. 登録日 2023-03-06 公開日 2023-06-21 最終更新日 2023-07-12 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Computational design of the temperature optimum of an enzyme reaction. Sci Adv, 9, 2023
7FBJ	Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing nanobody 17F6 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, New antigen receptor variable domain, ... 著者 Zhu, J, Xu, T, Feng, B, Liu, J. 登録日 2021-07-11 公開日 2022-07-13 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 A Class of Shark-Derived Single-Domain Antibodies can Broadly Neutralize SARS-Related Coronaviruses and the Structural Basis of Neutralization and Omicron Escape. Small Methods, 6, 2022
6HK1	Crystal structure of the Thiazole synthase from Methanothermococcus thermolithotrophicus co-crystallized with Tb-Xo4 分子名称: DI(HYDROXYETHYL)ETHER, GLYCEROL, SODIUM ION, ... 著者 Engilberge, S, Wagner, T, Santoni, G, Breyton, C, Shima, S, Franzetti, B, Riobe, F, Maury, O, Girard, E. 登録日 2018-09-05 公開日 2019-06-19 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Protein crystal structure determination with the crystallophore, a nucleating and phasing agent. J.Appl.Crystallogr., 52, 2019
8AD5	X-ray structure of NqrF(129-408)of Vibrio cholerae variant F406A 分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, FLAVIN-ADENINE DINUCLEOTIDE, Na(+)-translocating NADH-quinone reductase subunit F, ... 著者 Fritz, G. 登録日 2022-07-07 公開日 2023-07-12 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Conformational coupling of redox-driven Na + -translocation in Vibrio cholerae NADH:quinone oxidoreductase. Nat.Struct.Mol.Biol., 30, 2023
4RJJ	Acetolactate synthase from Bacillus subtilis bound to ThDP - crystal form II 分子名称: ACETATE ION, Acetolactate synthase, MAGNESIUM ION, ... 著者 Sommer, B, von Moeller, H, Haack, M, Qoura, F, Langner, C, Bourenkov, G, Garbe, D, Brueck, T, Loll, B. 登録日 2014-10-09 公開日 2014-10-22 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.34 Å) 主引用文献 Detailed Structure-Function Correlations of Bacillus subtilis Acetolactate Synthase. Chembiochem, 16, 2015
7QLB	SMYD3 in complex with fragment FL06268 分子名称: 1-methylimidazole-4-sulfonamide, Histone-lysine N-methyltransferase SMYD3, S-ADENOSYLMETHIONINE, ... 著者 Lund, B.A, Cederfelt, D, Dobritzsch, D. 登録日 2021-12-20 公開日 2023-03-29 最終更新日 2024-04-24 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Identification of fragments targeting SMYD3 using highly sensitive kinetic and multiplexed biosensor-based screening Rsc Med Chem, 2024

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