PDB: 537 件ウェブページステータス検索Chemie searchBIRD

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3AJL	Crystal structure of d(CGCGGATf5UCGCG): 5-Formyluridine:guanosine Base-pair in B-DNA with DAPI 分子名称: 5'-D(*CP*GP*CP*GP*GP*AP*TP*(UFR)P*CP*GP*CP*G)-3', 6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE, MAGNESIUM ION 著者 Tsunoda, M, Sakaue, T, Ueno, Y, Matsuda, A, Takenaka, A. 登録日 2010-06-07 公開日 2011-04-27 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Insights into the structures of DNA damaged by hydroxyl radical: crystal structures of DNA duplexes containing 5-formyluracil J Nucleic Acids, 2010, 2010
3AJK	Crystal structure of d(CGCGGATf5UCGCG): 5-Formyluridine:Guanosine Base-pair in B-DNA with Hoechst33258 分子名称: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, 5'-D(*CP*GP*CP*GP*GP*AP*TP*(UFR)P*CP*GP*CP*G*)-3', MAGNESIUM ION 著者 Tsunoda, M, Sakaue, T, Ueno, Y, Matsuda, A, Takenaka, A. 登録日 2010-06-07 公開日 2011-04-27 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Insights into the structures of DNA damaged by hydroxyl radical: crystal structures of DNA duplexes containing 5-formyluracil J Nucleic Acids, 2010, 2010
3AJJ	Crystal Structure of d(CGCGGATf5UCGCG): 5-Formyluridine/Guanosine Base-pair in B-DNA 分子名称: 5'-D(*CP*GP*CP*GP*GP*AP*TP*(UFR)P*CP*GP*CP*G)-3' 著者 Tsunoda, M, Sakaue, T, Ueno, Y, Matsuda, A, Takenaka, A. 登録日 2010-06-07 公開日 2011-04-27 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3.02 Å) 主引用文献 Insights into the structures of DNA damaged by hydroxyl radical: crystal structures of DNA duplexes containing 5-formyluracil J Nucleic Acids, 2010, 2010
1E2N	HPT + HMTT 分子名称: 6-{[4-(HYDROXYMETHYL)-5-METHYL-2,6-DIOXOHEXAHYDROPYRIMIDIN-5-YL]METHYL}-5-METHYLPYRIMIDINE-2,4(1H,3H)-DIONE, SULFATE ION, THYMIDINE KINASE 著者 Vogt, J, Scapozza, L, Schulz, G.E. 登録日 2000-05-23 公開日 2001-03-31 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The Effect of Substrate Binding on the Conformation and Structural Stability of Herpes Simplex Virus Type 1 Thymidine Kinase Protein Sci., 10, 2001
4K9R	Spore photoproduct lyase Y98F mutant 分子名称: IRON/SULFUR CLUSTER, SULFATE ION, Spore photoproduct lyase, ... 著者 Yang, L, Nelson, R.S, Benjdia, A, Lin, G, Telser, J, Stoll, S, Schlichting, I, Li, L. 登録日 2013-04-20 公開日 2013-05-08 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 A radical transfer pathway in spore photoproduct lyase. Biochemistry, 52, 2013
2DND	A BIFURCATED HYDROGEN-BONDED CONFORMATION IN THE D(A.T) BASE PAIRS OF THE DNA DODECAMER D(CGCAAATTTGCG) AND ITS COMPLEX WITH DISTAMYCIN 分子名称: DISTAMYCIN A, DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3') 著者 Coll, M, Frederick, C.A, Wang, A.H.-J, Rich, A. 登録日 1988-08-29 公開日 1989-01-09 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 A bifurcated hydrogen-bonded conformation in the d(A.T) base pairs of the DNA dodecamer d(CGCAAATTTGCG) and its complex with distamycin. Proc.Natl.Acad.Sci.USA, 84, 1987
7LJT	Porcine Dihydropyrimidine Dehydrogenase (DPD) soaked with 5-Ethynyluracil (5EU), NADPH - 20 minutes 分子名称: 5-ethynylpyrimidine-2,4(1H,3H)-dione, Dihydropyrimidine dehydrogenase [NADP(+)], FLAVIN MONONUCLEOTIDE, ... 著者 Butrin, A, Forouzesh, D, Beaupre, B, Wawrzak, Z, Liu, D, Moran, G. 登録日 2021-01-30 公開日 2021-04-07 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.98 Å) 主引用文献 The Interaction of Porcine Dihydropyrimidine Dehydrogenase with the Chemotherapy Sensitizer: 5-Ethynyluracil. Biochemistry, 60, 2021
7LJS	Porcine Dihydropyrimidine dehydrogenase (DPD) complexed with 5-Ethynyluracil (5EU) - Open Form 分子名称: 5-ethynylpyrimidine-2,4(1H,3H)-dione, Dihydropyrimidine dehydrogenase [NADP(+)], FLAVIN MONONUCLEOTIDE, ... 著者 Butrin, A, Forouzesh, D, Beaupre, B, Wawrzak, Z, Liu, D, Moran, G. 登録日 2021-01-30 公開日 2021-04-07 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 The Interaction of Porcine Dihydropyrimidine Dehydrogenase with the Chemotherapy Sensitizer: 5-Ethynyluracil. Biochemistry, 60, 2021
7LJU	Porcine Dihydropyrimidine Dehydrogenase (DPD) crosslinked with 5-Ethynyluracil (5EU) 分子名称: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL, 5-ethynylpyrimidine-2,4(1H,3H)-dione, Dihydropyrimidine dehydrogenase [NADP(+)], ... 著者 Butrin, A, Forouzesh, D, Beaupre, B, Wawrzak, Z, Liu, D, Moran, G. 登録日 2021-01-30 公開日 2021-04-07 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (1.87 Å) 主引用文献 The Interaction of Porcine Dihydropyrimidine Dehydrogenase with the Chemotherapy Sensitizer: 5-Ethynyluracil. Biochemistry, 60, 2021
478D	CRYSTAL STRUCTURE OF THE B-DNA DODECAMER 5'-D(CGCGAA(TAF)TCGCG), WHERE TAF IS 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE 分子名称: 5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-3', CALCIUM ION 著者 Minasov, G, Tereshko, V, Egli, M. 登録日 1999-06-26 公開日 1999-07-19 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Atomic-resolution crystal structures of B-DNA reveal specific influences of divalent metal ions on conformation and packing. J.Mol.Biol., 291, 1999
1EI4	B-DNA DODECAMER CGCGAAT(TLC)CGCG WITH INCORPORATED [3.3.0]BICYCLO-ARABINO-THYMINE-5'-PHOSPHATE 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*(TLC)P*(TLC)P*CP*GP*CP*G)-3'), MAGNESIUM ION, SPERMINE 著者 Minasov, G, Teplova, M, Nielsen, P, Wengel, J, Egli, M. 登録日 2000-02-24 公開日 2000-03-27 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.43 Å) 主引用文献 Structural basis of cleavage by RNase H of hybrids of arabinonucleic acids and RNA. Biochemistry, 39, 2000
5SWW	Crystal Structure of Human APOBEC3A complexed with ssDNA 分子名称: DNA 15-Mer, DNA dC->dU-editing enzyme APOBEC-3A, GLYCEROL, ... 著者 Shi, K, Banerjee, S, Kurahashi, K, Aihara, H. 登録日 2016-08-09 公開日 2016-12-28 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.151 Å) 主引用文献 Structural basis for targeted DNA cytosine deamination and mutagenesis by APOBEC3A and APOBEC3B. Nat. Struct. Mol. Biol., 24, 2017
5V1L	Structure of S-GNA dodecamer 分子名称: RNA (5'-R(*CP*GP*CP*GP*AP*AP*UP*(ZTH)P*AP*GP*CP*G)-3'), SPERMINE, STRONTIUM ION 著者 Pallan, P.S, Egli, M. 登録日 2017-03-02 公開日 2017-06-14 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Chirality Dependent Potency Enhancement and Structural Impact of Glycol Nucleic Acid Modification on siRNA. J. Am. Chem. Soc., 139, 2017
5TD5	Crystal Structure of Human APOBEC3B variant complexed with ssDNA 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, DNA (5'-D(P*TP*TP*CP*AP*T)-3'), ... 著者 Shi, K, Banerjee, S, Kurahashi, K, Aihara, H. 登録日 2016-09-16 公開日 2016-12-28 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.718 Å) 主引用文献 Structural basis for targeted DNA cytosine deamination and mutagenesis by APOBEC3A and APOBEC3B. Nat. Struct. Mol. Biol., 24, 2017
2R8J	Structure of the Eukaryotic DNA Polymerase eta in complex with 1,2-d(GpG)-cisplatin containing DNA 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, Cisplatin, ... 著者 Carell, T, Alt, A, Lammens, K. 登録日 2007-09-11 公開日 2007-12-11 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Bypass of DNA lesions generated during anticancer treatment with cisplatin by DNA polymerase eta Science, 318, 2007
2R8K	Structure of the Eukaryotic DNA Polymerase eta in complex with 1,2-d(GpG)-cisplatin containing DNA 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 5'-D(*DGP*DTP*DGP*DGP*DTP*DGP*DAP*DGP*DC)-3', 5'-D(P*DGP*DGP*DCP*DTP*DCP*DAP*DCP*DCP*DAP*DC)-3', ... 著者 Carell, T, Alt, A, Lammens, K. 登録日 2007-09-11 公開日 2007-12-11 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Bypass of DNA lesions generated during anticancer treatment with cisplatin by DNA polymerase eta Science, 318, 2007
4QKK	Crystal structure of an oligonucleotide containing 5-formylcytosine 分子名称: DNA (5'-D(*CP*TP*AP*(5FC)P*GP*(5FC)P*GP*(5FC)P*GP*TP*AP*G)-3') 著者 Raiber, E.-A, Murat, P, Chirgadze, D.Y, Luisi, B.F, Balasubramanian, S. 登録日 2014-06-06 公開日 2014-12-10 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 5-Formylcytosine alters the structure of the DNA double helix. Nat.Struct.Mol.Biol., 22, 2015
4IJ0	Structures of DNA duplexes containing O6-carboxymethylguanine, a lesion associated with gastrointestinal cancer, reveal a mechanism for inducing transition mutation 分子名称: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*(C6G)P*AP*AP*TP*TP*CP*GP*CP*G)-3'), STRONTIUM ION 著者 Zhang, F, Suzuki, K, Tsunoda, M, Wilkinson, O, Millington, C.L, Williams, D.M, Morishita, E.C, Takenaka, A. 登録日 2012-12-20 公開日 2013-05-08 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.54 Å) 主引用文献 Structures of DNA duplexes containing O6-carboxymethylguanine, a lesion associated with gastrointestinal cancer, reveal a mechanism for inducing pyrimidine transition mutations Nucleic Acids Res., 41, 2013
1DPN	B-DODECAMER CGCGAA(TAF)TCGCG WITH INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-3'), MAGNESIUM ION 著者 Egli, M, Tereshko, V, Teplova, M, Minasov, G, Joachimiak, A, Sanishvili, R, Weeks, C.M, Miller, R, Maier, M.A, An, H, Dan Cook, P, Manoharan, M. 登録日 1999-12-27 公開日 2000-04-04 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (0.95 Å) 主引用文献 X-ray crystallographic analysis of the hydration of A- and B-form DNA at atomic resolution. Biopolymers, 48, 1998
4ITD	Structures of DNA duplexes containing O6-carboxymethylguanine, a lesion associated with gastrointestinal cancer, reveal a mechanism for inducing transition mutation 分子名称: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*GP*(C6G)P*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION 著者 Zhang, F, Suzuki, K, Tsunoda, M, Wilkinson, O, Millington, C.L, Williams, D.M, Morishita, E.C, Takenaka, A. 登録日 2013-01-18 公開日 2013-05-08 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 Structures of DNA duplexes containing O6-carboxymethylguanine, a lesion associated with gastrointestinal cancer, reveal a mechanism for inducing pyrimidine transition mutations Nucleic Acids Res., 41, 2013
5EME	Complex of RNA r(GCAGCAGC) with antisense PNA p(CTGCTGC) 分子名称: Antisense PNA strand, CHLORIDE ION, RNA (5'-R(*GP*CP*AP*GP*CP*AP*GP*C)-3') 著者 Kiliszek, A, Banaszak, K, Dauter, Z, Rypniewski, W. 登録日 2015-11-06 公開日 2016-01-13 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (1.15 Å) 主引用文献 The first crystal structures of RNA-PNA duplexes and a PNA-PNA duplex containing mismatches-toward anti-sense therapy against TREDs. Nucleic Acids Res., 44, 2016
5EMG	Crystal structures of PNA p(GCTGCTGC)2 duplex containing T-T mismatches 分子名称: CHLORIDE ION, GPN-CPN-TPN-GPN-CPN-TPN-GPN-CPN, SODIUM ION 著者 Kiliszek, A, Banaszak, K, Dauter, Z, Rypniewski, W. 登録日 2015-11-06 公開日 2016-01-13 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (1.06 Å) 主引用文献 The first crystal structures of RNA-PNA duplexes and a PNA-PNA duplex containing mismatches-toward anti-sense therapy against TREDs. Nucleic Acids Res., 44, 2016
1N48	Y-family DNA polymerase Dpo4 in complex with DNA containing abasic lesion 分子名称: 5'-D(*CP*AP*(3DR)P*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3', ADENOSINE-5'-TRIPHOSPHATE, ... 著者 Ling, H, Boudsocq, F, Woodgate, R, Yang, W. 登録日 2002-10-30 公開日 2004-02-24 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 A Y-family polymerase complexed with abasic lesions: catching DNA with a loaded nucleoside triphosphate To be Published
2XC6	Crystal structure of the GNA 3'-CTC(Br)UAGAG-2' 分子名称: GNA, SODIUM ION 著者 Schlegel, M.K, Essen, L.-O, Meggers, E. 登録日 2010-04-16 公開日 2011-05-04 最終更新日 2024-06-19 実験手法 X-RAY DIFFRACTION (1.83 Å) 主引用文献 On the Structure and Dynamics of Duplex Gna. J.Org.Chem., 76, 2011
1JXL	Crystal Structure of a Y-Family DNA Polymerase in a Ternary Complex with DNA Substrates and an Incoming Nucleotide 分子名称: 1,2-ETHANEDIOL, 2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*T)-3', ... 著者 Ling, H, Boudsocq, F, Woodgate, R, Yang, W. 登録日 2001-09-07 公開日 2001-10-05 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of a Y-family DNA polymerase in action: a mechanism for error-prone and lesion-bypass replication. Cell(Cambridge,Mass.), 107, 2001

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