Crystal Structure of a Y-Family DNA Polymerase in a Ternary Complex with DNA Substrates and an Incoming Nucleotide

Summary for 1JXL

Descriptor5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*T)-3', 5'-D(*T*TP*CP*GP*AP*AP*(BRU)P*CP*CP*TP*(BRU)P*CP*CP*CP*CP*C)-3', DNA polymerase IV (family Y), ... (8 entities in total)
Functional Keywordsdna polymerase, protein-dna complex, y-family, transferase-dna complex, transferase/dna
Biological sourceSulfolobus solfataricus
Total number of polymer chains3
Total molecular weight49606.43
Ling, H.,Boudsocq, F.,Woodgate, R.,Yang, W. (deposition date: 2001-09-07, release date: 2001-10-05, Last modification date: 2019-11-20)
Primary citation
Ling, H.,Boudsocq, F.,Woodgate, R.,Yang, W.
Crystal structure of a Y-family DNA polymerase in action: a mechanism for error-prone and lesion-bypass replication.
Cell(Cambridge,Mass.), 107:91-102, 2001
PubMed: 11595188 (PDB entries with the same primary citation)
DOI: 10.1016/S0092-8674(01)00515-3
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.27710 0.6% 4.7% 3.3%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload
PDB entries from 2020-10-28