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1JXL

Crystal Structure of a Y-Family DNA Polymerase in a Ternary Complex with DNA Substrates and an Incoming Nucleotide

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003677molecular_functionDNA binding
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0009432biological_processSOS response
A0016740molecular_functiontransferase activity
A0016779molecular_functionnucleotidyltransferase activity
A0042276biological_processerror-prone translesion synthesis
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 1402
ChainResidue
AASP7
APHE8
AASP105
ADG3401
AHOH671
AMG1403

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 1403
ChainResidue
ADG3401
ACA1402
AASP7
AASP105
AGLU106

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 1404
ChainResidue
ATYR10
AARG51
ADG3401
AHOH671
AHOH683

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG A 1405
ChainResidue
AALA181
AILE186
AHOH600
AHOH685
AHOH688
PHOH519
PHOH674

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO T 1204
ChainResidue
ADG3401
PDT12
TDG4
TDA5
THOH542
THOH679

site_idAC6
Number of Residues27
DetailsBINDING SITE FOR RESIDUE DG3 A 401
ChainResidue
AASP7
APHE8
ATYR10
APHE11
AALA44
ATHR45
AARG51
AALA57
AGLY58
AASP105
AGLU106
ALYS159
AHOH541
AHOH653
AHOH670
AHOH671
AHOH683
AHOH728
AHOH737
AHOH755
ACA1402
AMG1403
AMG1404
PDT12
TDC3
TDG4
TEDO1204

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE:
ChainResidueDetails
AGLU106

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING:
ChainResidueDetails
AASP7
AASP105

site_idSWS_FT_FI3
Number of Residues1
DetailsSITE: Substrate discrimination
ChainResidueDetails
ATYR12

218853

PDB entries from 2024-04-24

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