PDB: 1544 件ウェブページステータス検索Chemie searchBIRD

---

9AVT	Structure of TAB2 NZF domain bound to K6 / Lys6-linked diubiquitin 分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, SULFATE ION, TGF-beta-activated kinase 1 and MAP3K7-binding protein 2, ... 著者 Michel, M.A, Scutts, S, Komander, D. 登録日 2024-03-04 公開日 2024-07-31 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structure of TAB2 NZF domain bound to K6 / Lys6-linked diubiquitin To be published
9AVW	Structure of TAB2 NZF domain bound to K6 / Lys6-linked diubiquitin 分子名称: SULFATE ION, TGF-beta-activated kinase 1 and MAP3K7-binding protein 2, Ubiquitin, ... 著者 Michel, M.A, Scutts, S, Komander, D. 登録日 2024-03-05 公開日 2024-07-31 実験手法 X-RAY DIFFRACTION (1.747 Å) 主引用文献 Structure of TAB2 NZF domain bound to K6 / Lys6-linked diubiquitin To be published
6OQ1	Crystal Structure of Branched K11/K48-Linked Tri-Ubiquitin 分子名称: Ubiquitin 著者 Boughton, A.J, Fushman, D. 登録日 2019-04-25 公開日 2019-10-23 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Branching via K11 and K48 Bestows Ubiquitin Chains with a Unique Interdomain Interface and Enhanced Affinity for Proteasomal Subunit Rpn1. Structure, 28, 2020
5M93	Crystal structure of SdeA-modified ubiquitin. 分子名称: Polyubiquitin-B, SULFATE ION, alpha-D-ribofuranose 著者 Kalayil, S, Bhogaraju, S, Dikic, I. 登録日 2016-10-31 公開日 2016-12-14 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.793 Å) 主引用文献 Phosphoribosylation of Ubiquitin Promotes Serine Ubiquitination and Impairs Conventional Ubiquitination. Cell, 167, 2016
5MN9	Crystal structure of MINDY-1 tMIU in complex with K48-diUb 分子名称: Ubiquitin carboxyl-terminal hydrolase MINDY-1, Ubiquitin-40S ribosomal protein S27a 著者 Kristariyanto, Y.A, Abdul Rehman, S.A, Kulathu, Y. 登録日 2016-12-13 公開日 2017-01-25 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 A single MIU motif of MINDY-1 recognizes K48-linked polyubiquitin chains. EMBO Rep., 18, 2017
7RMA	Structure of the fourth UIM (Ubiquitin Interacting Motif) of ANKRD13D in complex with a high affinity UbV (Ubiquitin Variant) 分子名称: Ankyrin repeat domain-containing protein 13D, SODIUM ION, SULFATE ION, ... 著者 Singer, A.U, Manczyk, N, Veggiani, G, Sicheri, F, Sidhu, S.S. 登録日 2021-07-27 公開日 2022-05-11 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Panel of Engineered Ubiquitin Variants Targeting the Family of Human Ubiquitin Interacting Motifs. Acs Chem.Biol., 17, 2022
6OQ2	NMR Structure of Branched K11/K48-Linked Tri-Ubiquitin 分子名称: Ubiquitin 著者 Boughton, A.J, Fushman, D. 登録日 2019-04-25 公開日 2019-10-23 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Branching via K11 and K48 Bestows Ubiquitin Chains with a Unique Interdomain Interface and Enhanced Affinity for Proteasomal Subunit Rpn1. Structure, 28, 2020
5NL4	Crystal structure of Zn1.3-E16V human ubiquitin (hUb) mutant adduct, from a solution 35 mM zinc acetate/1.3 mM E16V hUb 分子名称: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ... 著者 Fermani, S, Falini, G. 登録日 2017-04-04 公開日 2017-04-26 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.32 Å) 主引用文献 Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
7S6O	The crystal structure of Lys48-linked di-ubiquitin 分子名称: ACETATE ION, Ubiquitin 著者 Osipiuk, J, Tesar, C, Lanham, B.T, Wydorski, P, Fushman, D, Joachimiak, L, Joachimiak, A. 登録日 2021-09-14 公開日 2021-09-22 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin. Nat Commun, 14, 2023
7S6P	The crystal structure of human ISG15 分子名称: Ubiquitin-like protein ISG15 著者 Osipiuk, J, Tesar, C, Jedrzejczak, R, Endres, M, Wydorski, P, Joachimiak, L, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) 登録日 2021-09-14 公開日 2021-09-22 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin. Nat Commun, 14, 2023
6P81	Structure of DNA polymerase III, beta subunit/ beta sliding clamp from Klebsiella pneumoniae, expressed with an N-terminal His-Smt3 fusion tag, in complex with Griselimycin 分子名称: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, ACETATE ION, CALCIUM ION, ... 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2019-06-06 公開日 2019-07-10 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Structure of DNA polymerase III, beta subunit/ beta sliding clamp from Klebsiella pneumoniae, expressed with an N-terminal His-Smt3 fusion tag, in complex with Griselimycin to be published
5NMC	Crystal structure of Zn3-hUb(human ubiquitin) adduct from a solution 70 mM zinc acetate/20% v/v TFE/1.3 mM hUb 分子名称: ACETATE ION, Polyubiquitin-C, ZINC ION 著者 Fermani, S, Falini, G. 登録日 2017-04-05 公開日 2017-05-03 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5NL5	Crystal structure of Zn1.7-E16V human ubiquitin (hUb) mutant adduct, from a solution 70 mM zinc acetate/1.3 mM E16V hUb 分子名称: 1,2-ETHANEDIOL, ACETATE ION, Polyubiquitin-B, ... 著者 Fermani, S, Falini, G. 登録日 2017-04-04 公開日 2017-04-26 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5NLF	Crystal structure of Zn2.7-E16V human ubiquitin (hUb) mutant adduct, from a solution 100 mM zinc acetate/1.3 mM E16V hUb 分子名称: ACETATE ION, Polyubiquitin-C, ZINC ION 著者 Fermani, S, Falini, G. 登録日 2017-04-04 公開日 2017-05-03 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5NLJ	Crystal structure of Zn3-E16V human ubiquitin (hUb) mutant adduct, from a solution 70 mM zinc acetate/20% v/v TFE/1.3 mM E16V hUb 分子名称: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ... 著者 Fermani, S, Falini, G. 登録日 2017-04-04 公開日 2017-04-26 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.53 Å) 主引用文献 Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5N9V	NMR solution structure of ubl5 domain from polyubiquitin locus of T.thermophila. 分子名称: NAD(P)(+)--arginine ADP-ribosyltransferase 著者 Chiarini, V, Tossavainen, H. 登録日 2017-02-27 公開日 2018-03-21 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 NMR structure of a non-conjugatable, ADP-ribosylation associated, ubiquitin-like domain from Tetrahymena thermophila polyubiquitin locus. Biochim Biophys Acta Gen Subj, 1863, 2019
5NLI	Crystal structure of Zn2-E16V human ubiquitin (hUb) mutant adduct, from a solution 35 mM zinc acetate/10% v/v TFE/1.3 mM E16V hUb 分子名称: 1,2-ETHANEDIOL, ACETATE ION, Polyubiquitin-C, ... 著者 Fermani, S, Falini, G. 登録日 2017-04-04 公開日 2017-05-03 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.53 Å) 主引用文献 Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
7NBB	Branched Lys48- and Lys63-linked tri-ubiquitin (K48-K63-Ub3) in complex with synthetic nanobody NbSL3 分子名称: CHLORIDE ION, GLYCEROL, MAGNESIUM ION, ... 著者 Lange, S.M, Kulathu, Y. 登録日 2021-01-26 公開日 2022-08-10 最終更新日 2024-07-31 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 VCP/p97-associated proteins are binders and debranching enzymes of K48-K63-branched ubiquitin chains. Nat.Struct.Mol.Biol., 2024
5O44	Crystal structure of unbranched mixed tri-Ubiquitin chain containing K48 and K63 linkages. 分子名称: MAGNESIUM ION, Polyubiquitin-B, SULFATE ION, ... 著者 Padala, P, Isupov, M.N, Wiener, R. 登録日 2017-05-26 公開日 2017-11-08 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3.14 Å) 主引用文献 The Crystal Structure and Conformations of an Unbranched Mixed Tri-Ubiquitin Chain Containing K48 and K63 Linkages. J. Mol. Biol., 429, 2017
5NVG	Thr12 Phosphorylated Ubiquitin 分子名称: DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, Polyubiquitin-B 著者 Huguenin-Dezot, N. 登録日 2017-05-04 公開日 2017-05-31 最終更新日 2017-09-13 実験手法 X-RAY DIFFRACTION (1.07 Å) 主引用文献 Biosynthesis and genetic encoding of phosphothreonine through parallel selection and deep sequencing. Nat. Methods, 14, 2017
7M4O	Crystal structure of phosphorylated RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin 分子名称: 2-(2-METHOXYETHOXY)ETHANOL, E3 ubiquitin-protein ligase RNF216, GLYCEROL, ... 著者 Cotton, T.R, Lechtenberg, B.C. 登録日 2021-03-21 公開日 2022-01-05 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.21 Å) 主引用文献 Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216. Mol.Cell, 82, 2022
7M4M	Crystal structure of RBR E3 ligase RNF216 with ubiquitin 分子名称: E3 ubiquitin-protein ligase RNF216, GLYCEROL, Ubiquitin, ... 著者 Cotton, T.R, Lechtenberg, B.C. 登録日 2021-03-21 公開日 2022-01-05 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.39 Å) 主引用文献 Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216. Mol.Cell, 82, 2022
7M4N	Crystal structure of RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin 分子名称: E3 ubiquitin-protein ligase RNF216, GLYCEROL, SULFATE ION, ... 著者 Cotton, T.R, Lechtenberg, B.C. 登録日 2021-03-21 公開日 2022-01-05 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.52 Å) 主引用文献 Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216. Mol.Cell, 82, 2022
8HM1	crystal structure of human ubiquitin-like protein from Bacteroides fragilis 分子名称: 1,2-ETHANEDIOL, Putative ubiquitin 著者 Tong, M, Chen, Z, Gao, X. 登録日 2022-12-02 公開日 2023-11-29 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.29 Å) 主引用文献 Bacteroides fragilis ubiquitin homologue drives intraspecies bacterial competition in the gut microbiome. Nat Microbiol, 9, 2024
8HM2	Crystal structure of human ubiquitin-like protein from bacteroides fragilis c terminal cysteine mutant 分子名称: Putative ubiquitin 著者 Tong, M, Chen, Z, Gao, X. 登録日 2022-12-02 公開日 2023-11-29 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.34 Å) 主引用文献 Bacteroides fragilis ubiquitin homologue drives intraspecies bacterial competition in the gut microbiome. Nat Microbiol, 9, 2024

<12345678910111213141516>