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7D92
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Crystal Structure of the Na+,K+-ATPase in the E2P state with bound Mg2+ and anthroylouabain (P4(3)2(1)2 symmetry)
分子名称: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Kanai, R, Cornelius, F, Ogawa, H, Motoyama, K, Vilsen, B, Toyoshima, C.
登録日2020-10-12
公開日2021-01-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.9 Å)
主引用文献Binding of cardiotonic steroids to Na + ,K + -ATPase in the E2P state.
Proc.Natl.Acad.Sci.USA, 118, 2021
8AD3
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X-ray structure of NqrF(129-408)of Vibrio cholerae variant F406A
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, MAGNESIUM ION, Na(+)-translocating NADH-quinone reductase subunit F
著者Fritz, G.
登録日2022-07-07
公開日2023-07-12
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Conformational coupling of redox-driven Na + -translocation in Vibrio cholerae NADH:quinone oxidoreductase.
Nat.Struct.Mol.Biol., 30, 2023
7X23
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Cryo-EM structure of non gastric H,K-ATPase alpha2 SPWC mutant in 3Na+E1-AMPPCPF state
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, Potassium-transporting ATPase alpha chain 2, ...
著者Abe, K, Nakanishi, H, Young, V, Artigas, P.
登録日2022-02-25
公開日2022-10-05
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structure and function of H + /K + pump mutants reveal Na + /K + pump mechanisms.
Nat Commun, 13, 2022
3ZK2
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BU of 3zk2 by Molmil
Crystal structure of the sodium binding rotor ring at pH 8.7
分子名称: ATP SYNTHASE SUBUNIT C, DECYL-BETA-D-MALTOPYRANOSIDE, SODIUM ION
著者Schulz, S, Meier, T, Yildiz, O.
登録日2013-01-21
公開日2013-05-29
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.63 Å)
主引用文献A new type of Na(+)-driven ATP synthase membrane rotor with a two-carboxylate ion-coupling motif.
PLoS Biol., 11, 2013
6VWX
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NaChBac in lipid nanodisc
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, BH1501 protein, SODIUM ION
著者Yan, N, Gao, S.
登録日2020-02-20
公開日2020-06-24
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Employing NaChBac for cryo-EM analysis of toxin action on voltage-gated Na+channels in nanodisc.
Proc.Natl.Acad.Sci.USA, 117, 2020
2OCV
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Structural basis of Na+ activation mimicry in murine thrombin
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Thrombin
著者Marino, F, Chen, Z, Ergenekan, C.E, Bush, L.A, Mathews, F.S, Di Cera, E.
登録日2006-12-21
公開日2007-04-10
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis of na+ activation mimicry in murine thrombin.
J.Biol.Chem., 282, 2007
4NYP
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The 2.0 Angstrom Crystal Structure of Pyrococcus Horikoshii Cuta1 Complexed With NA+
分子名称: Divalent-cation tolerance protein CutA, SODIUM ION, SULFATE ION
著者Bagautdinov, B, Tahirov, T.H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2013-12-11
公開日2014-01-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The 2.0 Angstrom Crystal Structure of Pyrococcus Horikoshii Complexed with Na+
To be Published
6A31
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Crystal structure of Na+ bound Peptidyl-tRNA Hydrolase from Acinetobacter baumannii at 2.19 A resolution
分子名称: Peptidyl-tRNA hydrolase, SODIUM ION
著者Bairagya, H.R, Sharma, P, Singh, P.K, Sharma, S, Singh, T.P.
登録日2018-06-14
公開日2018-06-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.19 Å)
主引用文献Crystal structure of Na+ bound Peptidyl-tRNA Hydrolase from Acinetobacter baumannii at 2.19 A resolution
To Be Published
8OTX
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Cryo-EM structure of Strongylocentrotus purpuratus sperm-specific Na+/H+ exchanger SLC9C1 in nanodisc
分子名称: 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE, Sperm-specific sodium proton exchanger
著者Yeo, H, Mehta, V, Gulati, A, Drew, D.
登録日2023-04-21
公開日2023-11-01
最終更新日2023-11-22
実験手法ELECTRON MICROSCOPY (3.08 Å)
主引用文献Structure and electromechanical coupling of a voltage-gated Na + /H + exchanger.
Nature, 623, 2023
8OTQ
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Cryo-EM structure of Strongylocentrotus purpuratus sperm-specific Na+/H+ exchanger SLC9C1 in GDN
分子名称: 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, PALMITIC ACID, Sperm-specific sodium proton exchanger
著者Yeo, H, Mehta, V, Gulati, A, Drew, D.
登録日2023-04-21
公開日2023-11-01
最終更新日2023-11-22
実験手法ELECTRON MICROSCOPY (3.22 Å)
主引用文献Structure and electromechanical coupling of a voltage-gated Na + /H + exchanger.
Nature, 623, 2023
4BVN
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Ultra-thermostable beta1-adrenoceptor with cyanopindolol bound
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (CARBAMOYLMETHYL-CARBOXYMETHYL-AMINO)-ACETIC ACID, 4-{[(2S)-3-(tert-butylamino)-2-hydroxypropyl]oxy}-3H-indole-2-carbonitrile, ...
著者Miller, J, Nehme, R, Warne, T, Edwards, P.C, Leslie, A.G.W, Schertler, G, Tate, C.G.
登録日2013-06-26
公開日2014-04-02
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The 2.1 A Resolution Structure of Cyanopindolol-Bound Beta1- Adrenoceptor Identifies an Intramembrane Na+ Ion that Stabilises the Ligand-Free Receptor.
Plos One, 9, 2014
4M64
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3D crystal structure of Na+/melibiose symporter of Salmonella typhimurium
分子名称: Melibiose carrier protein
著者Ethayathulla, A.S, Guan, L.
登録日2013-08-08
公開日2014-01-15
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3.35 Å)
主引用文献Structure-based mechanism for Na(+)/melibiose symport by MelB.
Nat Commun, 5, 2014
2MBJ
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BU of 2mbj by Molmil
Structure of an antiparallel (2+2) G-quadruplex formed by human telomeric repeats in Na+ solution (with G22-to-BrG substitution)
分子名称: DNA_(27-MER)
著者Lim, K.W, Ng, V.C.M, Martin-Pintado, N, Heddi, B, Phan, A.T.
登録日2013-08-02
公開日2013-09-18
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure of the human telomere in Na+ solution: an antiparallel (2+2) G-quadruplex scaffold reveals additional diversity.
Nucleic Acids Res., 41, 2013
4NUN
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BU of 4nun by Molmil
Crystal structure of copper-bound Na-ASP-2
分子名称: Ancylostoma secreted protein 2, COPPER (II) ION
著者Hofmann, A.
登録日2013-12-03
公開日2014-05-14
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Probing the equatorial groove of the hookworm protein and vaccine candidate antigen, Na-ASP-2.
Int.J.Biochem.Cell Biol., 50, 2014
4NUO
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Crystal structure of zinc-bound Na-ASP-2
分子名称: Ancylostoma secreted protein 2, ZINC ION
著者Hofmann, A.
登録日2013-12-03
公開日2014-05-14
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Probing the equatorial groove of the hookworm protein and vaccine candidate antigen, Na-ASP-2.
Int.J.Biochem.Cell Biol., 50, 2014
4NUK
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BU of 4nuk by Molmil
Crystal structure of nickel-bound Na-ASP-2
分子名称: Ancylostoma secreted protein 2, NICKEL (II) ION
著者Hofmann, A.
登録日2013-12-03
公開日2014-05-14
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Probing the equatorial groove of the hookworm protein and vaccine candidate antigen, Na-ASP-2.
Int.J.Biochem.Cell Biol., 50, 2014
2KBV
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BU of 2kbv by Molmil
Structural and functional analysis of TM XI of the NHE1 isoform of thE NA+/H+ exchanger
分子名称: Sodium/hydrogen exchanger 1
著者Lee, B.L, Li, X, Liu, Y, Sykes, B.D, Fliegel, L.
登録日2008-12-09
公開日2009-01-27
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Structural and Functional Analysis of Transmembrane XI of the NHE1 Isoform of the Na+/H+ Exchanger
J.Biol.Chem., 284, 2009
2K3C
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BU of 2k3c by Molmil
Structural and Functional Characterization of TM IX of the NHE1 Isoform of the Na+/H+ Exchanger
分子名称: TMIX peptide
著者Reddy, T, Ding, J, Li, X, Sykes, B.D, Fliegel, L, Rainey, J.K.
登録日2008-05-01
公開日2008-06-03
最終更新日2020-02-19
実験手法SOLUTION NMR
主引用文献Structural and Functional Characterization of Transmembrane Segment IX of the NHE1 Isoform of the Na+/H+ Exchanger.
J.Biol.Chem., 283, 2008
3R3G
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BU of 3r3g by Molmil
Structure of human thrombin with residues 145-150 of murine thrombin.
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, SODIUM ION, Thrombin Heavy Chain, ...
著者Pozzi, N, Chen, R, Chen, Z, Bah, A, Di Cera, E.
登録日2011-03-15
公開日2011-05-11
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Rigidification of the autolysis loop enhances Na(+) binding to thrombin.
Biophys.Chem., 159, 2011
4BEM
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BU of 4bem by Molmil
Crystal structure of the F-type ATP synthase c-ring from Acetobacterium woodii.
分子名称: ACETATE ION, F1FO ATPASE C1 SUBUNIT, F1FO ATPASE C2 SUBUNIT, ...
著者Matthies, D, Meier, T, Yildiz, O.
登録日2013-03-11
公開日2014-03-26
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献High-Resolution Structure and Mechanism of an F/V-Hybrid Rotor Ring in a Na+-Coupled ATP Synthase
Nat.Commun., 5, 2014
2L0E
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BU of 2l0e by Molmil
Structural and functional analysis of tm vi of the nhe1 isoform of the na+/h+ exchanger
分子名称: Sodium/hydrogen exchanger 1
著者Tzeng, J, Lee, B.L, Sykes, B.D, Fliegel, L.
登録日2010-07-01
公開日2010-09-15
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural and Functional Analysis of Transmembrane Segment VI of the NHE1 Isoform of the Na+/H+ Exchanger.
J.Biol.Chem., 285, 2010
4LLH
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BU of 4llh by Molmil
Substrate bound outward-open state of the symporter BetP
分子名称: 2-(trimethyl-lambda~5~-arsanyl)ethanol, 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE, CHLORIDE ION, ...
著者Perez, C, Faust, B, Ziegler, C.
登録日2013-07-09
公開日2014-05-07
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Substrate-bound outward-open state of the betaine transporter BetP provides insights into Na(+) coupling.
Nat Commun, 5, 2014
3F6U
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Crystal structure of human Activated Protein C (APC) complexed with PPACK
分子名称: CALCIUM ION, D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide, SODIUM ION, ...
著者Schmidt, A.E, Padmanabhan, K, Underwood, M.C, Bode, W, Mather, T, Bajaj, S.P.
登録日2008-11-06
公開日2008-11-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Thermodynamic linkage between the S1 site, the Na+ site, and the Ca2+ site in the protease domain of human activated protein C (APC).
J.Biol.Chem., 277, 2002
6BJF
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NMR Structural and biophysical functional analysis of intracellular loop 5 of the NHE1 isoform of the Na+/H+ exchanger.
分子名称: GLY-LEU-THR-TRP-PHE-ILE-ASN-LYS-PHE-ARG-ILE-VAL-LYS
著者McKay, R, Wong, K, Towle, K, Fliegel, L.
登録日2017-11-06
公開日2018-11-14
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Diverse residues of intracellular loop 5 of the Na+/H+exchanger modulate proton sensing, expression, activity and targeting.
Biochim Biophys Acta Biomembr, 1861, 2019
2MKV
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Structure of the NA,K-ATPASE regulatory protein FXYD2b in micelles
分子名称: Sodium/potassium-transporting ATPase subunit gamma
著者Marassi, F.M, Gong, X.
登録日2014-02-13
公開日2014-05-14
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure of the Na,K-ATPase regulatory protein FXYD2b in micelles: Implications for membrane-water interfacial arginines.
Biochim.Biophys.Acta, 1848, 2015

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