PDB: 41522 件ウェブページステータス検索Chemie searchBIRD

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3WMT	Crystal structure of feruloyl esterase B from Aspergillus oryzae 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Probable feruloyl esterase B-1 著者 Suzuki, K, Ishida, T, Igarashi, K, Koseki, T, Fushinobu, S. 登録日 2013-11-25 公開日 2014-08-06 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Crystal structure of a feruloyl esterase belonging to the tannase family: a disulfide bond near a catalytic triad. Proteins, 82, 2014
6J3L	Solution structure of the N-terminal extended protuberant domain of eukaryotic ribosomal stalk protein P0 分子名称: 60S acidic ribosomal protein P0 著者 Choi, K.H.A, Lee, K.M, Yang, L, Wing-Heng Yu, C, Banfield, D.K, Ito, K, Uchiumi, T, Wong, K.B. 登録日 2019-01-04 公開日 2019-09-04 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural and Mutagenesis Studies Evince the Role of the Extended Protuberant Domain of Ribosomal Protein uL10 in Protein Translation. Biochemistry, 58, 2019
3WO1	Crystal structure of Trp332Ala mutant YwfE, an L-amino acid ligase, with bound ADP-Mg-Ala 分子名称: ADENOSINE-5'-DIPHOSPHATE, ALANINE, Alanine-anticapsin ligase BacD, ... 著者 Tsuda, T, Kojima, S. 登録日 2013-12-19 公開日 2014-05-14 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Single Mutation Alters the Substrate Specificity of l-Amino Acid Ligase Biochemistry, 53, 2014
6JV0	Crystal Structure of N-terminal domain of ArgZ, bound to Product, an arginine dihydrolase from the Ornithine-Ammonia Cycle in Cyanobacteria 分子名称: 1,2-ETHANEDIOL, L-ornithine, Sll1336 protein 著者 Zhuang, N, Li, L, Wu, X, Zhang, Y. 登録日 2019-04-15 公開日 2020-01-15 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.14 Å) 主引用文献 Crystal structures and biochemical analyses of the bacterial arginine dihydrolase ArgZ suggests a "bond rotation" catalytic mechanism. J.Biol.Chem., 295, 2020
3WO2	Crystal structure of human interleukin-18 分子名称: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, Interleukin-18, SULFATE ION 著者 Tsutsumi, N, Kimura, T, Arita, K, Ariyoshi, M, Ohnishi, H, Kondo, N, Shirakawa, M, Kato, Z, Tochio, H. 登録日 2013-12-19 公開日 2014-12-17 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.33 Å) 主引用文献 The structural basis for receptor recognition of human interleukin-18 Nat Commun, 5, 2014
1PZ7	Modulation of agrin function by alternative splicing and Ca2+ binding 分子名称: Agrin, CALCIUM ION 著者 Stetefeld, J, Alexandrescu, A.T, Maciejewski, M.W, Jenny, M, Rathgeb-Szabo, K, Schulthess, T, Landwehr, R, Frank, S, Ruegg, M.A, Kammerer, R.A. 登録日 2003-07-10 公開日 2004-04-13 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.421 Å) 主引用文献 Modulation of agrin function by alternative splicing and Ca2+ binding. STRUCTURE, 12, 2004
1Q56	NMR structure of the B0 isoform of the agrin G3 domain in its Ca2+ bound state 分子名称: Agrin 著者 Stetefeld, J, Alexandrescu, A.T, Maciejewski, M.W, Jenny, M, Rathgeb-Szabo, K, Schulthess, T, Landwehr, R, Frank, S, Ruegg, M.A, Kammerer, R.A. 登録日 2003-08-06 公開日 2004-04-13 最終更新日 2022-03-02 実験手法 SOLUTION NMR 主引用文献 Modulation of agrin function by alternative splicing and Ca2+ binding Structure, 12, 2004
3WQJ	Crystal structure of archaerhodopsin-2 at 1.8 angstrom resolution 分子名称: (6E,10E,14E,18E)-2,6,10,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaene, 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, 2,3-DI-PHYTANYL-GLYCEROL, ... 著者 Kouyama, T. 登録日 2014-01-27 公開日 2014-10-15 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structure of archaerhodopsin-2 at 1.8 angstrom resolution. Acta Crystallogr.,Sect.D, 70, 2014
3WU9	Spatiotemporal development of soaked protein crystal; derivative 1580 sec 分子名称: Lysozyme C, PLATINUM (IV) ION 著者 Mizutani, R, Saiga, R. 登録日 2014-04-23 公開日 2014-07-30 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Spatiotemporal development of soaked protein crystal Sci Rep, 4, 2014
3WQH	Crystal Structure of human DPP-IV in complex with Anagliptin 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Dipeptidyl peptidase 4, N-[2-({2-[(2S)-2-cyanopyrrolidin-1-yl]-2-oxoethyl}amino)-2-methylpropyl]-2-methylpyrazolo[1,5-a]pyrimidine-6-carboxamide 著者 Watanabe, Y.S, Okada, S, Motoyama, T, Takahashi, R, Adachi, H, Oka, M. 登録日 2014-01-27 公開日 2015-07-15 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Anagliptin, a potent dipeptidyl peptidase IV inhibitor: its single-crystal structure and enzyme interactions. J Enzyme Inhib Med Chem, 30, 2015
6F5K	Crystal structure of laccase from Myceliophthora thermophila 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... 著者 Ernst, H.A, Joergensen, L.J, Piontek, K, Bukh, C, Oestergaard, L.H, Larsen, S, Bjerrum, M.J. 登録日 2017-12-01 公開日 2018-12-12 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.62 Å) 主引用文献 A comparative structural analysis of the surface properties of asco-laccases. Plos One, 13, 2018
6FLM	Crystal structure of the human TRIM25 PRYSPRY domain 分子名称: CHLORIDE ION, E3 ubiquitin/ISG15 ligase TRIM25, SULFATE ION 著者 Cusack, S, Kowalinski, E. 登録日 2018-01-26 公開日 2018-05-23 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.009 Å) 主引用文献 Molecular mechanism of influenza A NS1-mediated TRIM25 recognition and inhibition. Nat Commun, 9, 2018
8SZZ	CryoEM Structure of Computationally Designed Nanocage O32-ZL4 分子名称: O32-ZL4 Component A, O32-ZL4 Component B, SODIUM ION 著者 Weidle, C, Borst, A. 登録日 2023-05-30 公開日 2023-11-01 最終更新日 2023-12-27 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023
6K26	Crystal structure of Vibrio cholerae methionine aminopeptidase 分子名称: Methionine aminopeptidase, SODIUM ION 著者 Pillalamarri, V, Addlagatta, A. 登録日 2019-05-13 公開日 2020-05-20 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Methionine aminopeptidases with short sequence inserts within the catalytic domain are differentially inhibited: Structural and biochemical studies of three proteins from Vibrio spp. Eur.J.Med.Chem., 209, 2020
3WPJ	SPATIOTEMPORAL DEVELOPMENT of SOAKED PROTEIN CRYSTAL; NATIVE 分子名称: Lysozyme C 著者 Mizutani, R, Saiga, R. 登録日 2014-01-12 公開日 2014-07-30 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Spatiotemporal development of soaked protein crystal Sci Rep, 4, 2014
3WTF	Structure of PAXX 分子名称: Uncharacterized protein C9orf142 著者 Ochi, T, Blundell, T.L. 登録日 2014-04-09 公開日 2015-01-21 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3.451 Å) 主引用文献 DNA repair. PAXX, a paralog of XRCC4 and XLF, interacts with Ku to promote DNA double-strand break repair. Science, 347, 2015
6FBL	NMR Solution Structure of MINA-1(254-334) 分子名称: MINA-1 著者 Michel, E, Allain, F. 登録日 2017-12-19 公開日 2019-01-30 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 MINA-1 and WAGO-4 are part of regulatory network coordinating germ cell death and RNAi in C. elegans. Cell Death Differ., 26, 2019
6JV1	Crystal Structure of N-terminal domain of ArgZ, C264S mutant, bound to Substrate, an arginine dihydrolase from the Ornithine-Ammonia Cycle in Cyanobacteria 分子名称: ARGININE, Sll1336 protein 著者 Zhuang, N, Li, L, Wu, X, Zhang, Y. 登録日 2019-04-15 公開日 2020-01-15 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Crystal structures and biochemical analyses of the bacterial arginine dihydrolase ArgZ suggests a "bond rotation" catalytic mechanism. J.Biol.Chem., 295, 2020
8TDW	ssRNA bound SAMHD1 T open 分子名称: Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, FE (III) ION, RNA (5'-R(P*CP*CP*GP*AP*CP*C)-3'), ... 著者 Sung, M, Huynh, K, Han, S. 登録日 2023-07-05 公開日 2023-11-22 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (3.04 Å) 主引用文献 Guanine-containing ssDNA and RNA induce dimeric and tetrameric structural forms of SAMHD1. Nucleic Acids Res., 51, 2023
5OEO	Solution structure of the complex of TRPV5(655-725) with a Calmodulin E32Q/E68Q double mutant 分子名称: CALCIUM ION, Calmodulin-1, Transient receptor potential cation channel subfamily V member 5 著者 Vuister, G.W, Bokhovchuk, F.M, Bate, N, Kovalevskaya, N, Goult, B.T, Spronk, C.A.E.M. 登録日 2017-07-09 公開日 2018-04-25 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 The Structural Basis of Calcium-Dependent Inactivation of the Transient Receptor Potential Vanilloid 5 Channel. Biochemistry, 57, 2018
6FLN	Crystal structure of the human TRIM25 coiled-coil and PRYSPRY domains 分子名称: E3 ubiquitin/ISG15 ligase TRIM25 著者 Cusack, S, Lethier, M. 登録日 2018-01-26 公開日 2018-05-23 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Molecular mechanism of influenza A NS1-mediated TRIM25 recognition and inhibition. Nat Commun, 9, 2018
6FOG	X-ray structure of homo sapiens Fumarylacetoacetate hydrolase domain containing protein 1 (FAHD1) in complex with inhibitor oxalate at 1.94A resolution. 分子名称: Acylpyruvase FAHD1, mitochondrial, CHLORIDE ION, ... 著者 Naschberger, A, Weiss, A.K.H. 登録日 2018-02-07 公開日 2018-11-07 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 Structural basis for the bi-functionality of human oxaloacetate decarboxylase FAHD1. Biochem. J., 475, 2018
1C76	STAPHYLOKINASE (SAK) MONOMER 分子名称: STAPHYLOKINASE 著者 Rao, Z, Jiang, F, Liu, Y, Zhang, X, Chen, Y, Bartlam, M, Song, H, Ding, Y. 登録日 2000-02-01 公開日 2000-08-01 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Crystal Structure of Staphylokinase Dimer Offers New Clue to Reduction of Immunogenicity To be published
1OK4	Archaeal fructose 1,6-bisphosphate aldolase covalently bound to the substrate dihydroxyacetone phosphate 分子名称: 1,3-DIHYDROXYACETONEPHOSPHATE, FRUCTOSE-BISPHOSPHATE ALDOLASE CLASS I 著者 Lorentzen, E, Zwart, P, Stark, A, Hensel, R, Siebers, B, Pohl, E. 登録日 2003-07-17 公開日 2003-09-04 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of an archaeal class I aldolase and the evolution of (betaalpha)8 barrel proteins. J. Biol. Chem., 278, 2003
1OK6	Orthorhombic crystal form of an Archaeal fructose 1,6-bisphosphate aldolase 分子名称: FRUCTOSE-BISPHOSPHATE ALDOLASE CLASS I, GLYCEROL 著者 Lorentzen, E, Zwart, P, Stark, A, Hensel, R, Siebers, B, Pohl, E. 登録日 2003-07-18 公開日 2003-09-04 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal structure of an archaeal class I aldolase and the evolution of (betaalpha)8 barrel proteins. J. Biol. Chem., 278, 2003

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