3WPJ

SPATIOTEMPORAL DEVELOPMENT of SOAKED PROTEIN CRYSTAL; NATIVE

Summary for 3WPJ

• Entry DOI: 10.2210/pdb3wpj/pdb
• Related: 3WPL 3wpk 3wu7 3wu8 3wu9 3wua
• Descriptor: Lysozyme C (2 entities in total)
• Functional Keywords: bacterial cell wall lysis, hydrolase
• Biological source: Gallus gallus (bantam,chickens)
• Cellular location: Secreted: P00698
• Total number of polymer chains: 1
• Total formula weight: 14331.16

Authors

Mizutani, R.,Saiga, R. (deposition date: 2014-01-12, release date: 2014-07-30, Last modification date: 2023-11-08)

Primary citation

Mizutani, R.,Shimizu, Y.,Saiga, R.,Ueno, G.,Nakamura, Y.,Takeuchi, A.,Uesugi, K.,Suzuki, Y.
Spatiotemporal development of soaked protein crystal
Sci Rep, 4:5731-5731, 2014

PubMed Abstract: Crystal soaking is widely performed in biological crystallography. This paper reports time-resolved X-ray crystallographic and microtomographic analyses of tetragonal crystals of chicken egg-white lysozyme soaked in mother liquor containing potassium hexachloroplatinate. The microtomographic analysis showed that X-ray attenuation spread from the superficial layer of the crystal and then to the crystal core. The crystallographic analyses indicated that platinum sites can be classified into two groups from the temporal development of the electron densities. A soaking process consisting of binding-rate-driven and equilibrium-driven layers is proposed to describe these results. This study suggests that the composition of chemical and structural species resulting from the soaking process varies depending on the position in the crystal.

PubMed: 25043871
DOI: 10.1038/srep05731

Experimental method

X-RAY DIFFRACTION (2 Å)