PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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5WCU	Crystal structure of 167 bp nucleosome bound to the globular domain of linker histone H5 分子名称: DNA (167-MER), Histone H2A, Histone H2B, ... 著者 Jiang, J.S, Zhou, B.R. 登録日 2017-07-02 公開日 2018-10-31 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (5.53 Å) 主引用文献 Revisit of Reconstituted 30-nm Nucleosome Arrays Reveals an Ensemble of Dynamic Structures. J. Mol. Biol., 430, 2018
4ZUX	SAGA DUB module Ubp8/Sgf11/Sus1/Sgf73 bound to ubiqitinated nucleosome 分子名称: DNA (145-MER), Histone H2A type 1, Histone H2B 1.1, ... 著者 Morgan, M, Wolberger, C. 登録日 2015-05-17 公開日 2016-02-24 最終更新日 2016-03-09 実験手法 X-RAY DIFFRACTION (3.82 Å) 主引用文献 Structural basis for histone H2B deubiquitination by the SAGA DUB module. Science, 351, 2016
1BJ6	1H NMR OF (12-53) NCP7/D(ACGCC) COMPLEX, 10 STRUCTURES 分子名称: DNA (5'-D(*AP*CP*GP*CP*C)-3'), NUCLEOCAPSID PROTEIN 7, ZINC ION 著者 Demene, H, Morellet, N, Teilleux, V, Huynh-Dinh, T, De Rocquigny, H, Fournie-Zaluski, M.C, Roques, B.P. 登録日 1998-07-03 公開日 1999-02-02 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of the complex between the HIV-1 nucleocapsid protein NCp7 and the single-stranded pentanucleotide d(ACGCC). J.Mol.Biol., 283, 1998
8JLB	Cryo-EM structure of the 145 bp human nucleosome containing H3.2 C110A mutant 分子名称: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Oishi, T, Hatazawa, S, Kujirai, T, Kato, J, Kobayashi, Y, Ogasawara, M, Akatsu, M, Takizawa, Y, Kurumizaka, H. 登録日 2023-06-02 公開日 2023-10-04 最終更新日 2023-11-08 実験手法 ELECTRON MICROSCOPY (2.36 Å) 主引用文献 Contributions of histone tail clipping and acetylation in nucleosome transcription by RNA polymerase II. Nucleic Acids Res., 51, 2023
5YEH	Crystal structure of CTCF ZFs4-8-eCBS 分子名称: DNA (5'-D(*AP*CP*GP*GP*TP*TP*TP*CP*CP*GP*CP*TP*AP*GP*AP*GP*GP*GP*CP*G)-3'), DNA (5'-D(*TP*CP*GP*CP*CP*CP*TP*CP*TP*AP*GP*CP*GP*GP*AP*AP*AP*CP*CP*G)-3'), Transcriptional repressor CTCF, ... 著者 Yin, M, Wang, J, Wang, M, Li, X, Wang, Y. 登録日 2017-09-17 公開日 2017-11-29 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.328 Å) 主引用文献 Molecular mechanism of directional CTCF recognition of a diverse range of genomic sites Cell Res., 27, 2017
5UH7	Crystal structure of beta'MtbSI of Mycobacterium tuberculosis RNA polymerase 分子名称: DNA-directed RNA polymerase subunit beta' 著者 Lin, W, Das, K, Feng, Y, Ebright, R.H. 登録日 2017-01-11 公開日 2017-04-12 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.199 Å) 主引用文献 Structural Basis of Mycobacterium tuberculosis Transcription and Transcription Inhibition. Mol. Cell, 66, 2017
2WLU	Iron-bound crystal structure of Streptococcus pyogenes Dpr 分子名称: DPS-LIKE PEROXIDE RESISTANCE PROTEIN, FE (III) ION, GLYCEROL, ... 著者 Haikarainen, T, Tsou, C.-C, Wu, J.-J, Papageorgiou, A.C. 登録日 2009-06-26 公開日 2009-09-15 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 Crystal Structures of Streptococcus Pyogenes Dpr Reveal a Dodecameric Iron-Binding Protein with a Ferroxidase Site. J.Biol.Inorg.Chem., 15, 2010
7UKN	Crystal Structure of DDB1 in Complex with the H-Box Motif of pUL145 分子名称: DNA damage-binding protein 1, H-Box Motif of pUL145 著者 Wick, E.T, Treadway, C.J, Nicely, N.I, Li, Z, Ren, Z, Baldwin, A.S, Xiong, Y, Harrison, J.S, Brown, N.G. 登録日 2022-04-01 公開日 2022-08-10 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Insight into Viral Hijacking of CRL4 Ubiquitin Ligase through Structural Analysis of the pUL145-DDB1 Complex. J.Virol., 96, 2022
7E9F	Cryo-EM structure of the 2:1 Orc1 BAH domain in complex with nucleosome 分子名称: DNA (147-mer), Histone H2A.2, Histone H2B.2, ... 著者 Jiang, H, Yu, C, Liu, C.P, Han, X, Yu, Z, Xu, R.M. 登録日 2021-03-04 公開日 2022-09-07 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Nucleosome binding relinquishes the association of the BAH domain of Orc1 with Sir1 To Be Published
7E9C	Cryo-EM structure of the 1:1 Orc1 BAH domain in complex with nucleosome 分子名称: DNA (147-mer), Histone H2A.2, Histone H2B.2, ... 著者 Jiang, H, Yu, C, Liu, C.P, Han, X, Yu, Z, Xu, R.M. 登録日 2021-03-04 公開日 2022-09-07 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Nucleosome binding relinquishes the association of the BAH domain of Orc1 with Sir1 To Be Published
7BUJ	mcGAS bound with pppGpG 分子名称: Cyclic GMP-AMP synthase, GUANOSINE-5'-MONOPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ... 著者 Wang, B, Su, X.D. 登録日 2020-04-07 公開日 2020-09-02 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.13 Å) 主引用文献 Mn2+Directly Activates cGAS and Structural Analysis Suggests Mn2+Induces a Noncanonical Catalytic Synthesis of 2'3'-cGAMP. Cell Rep, 32, 2020
2L3N	Solution structure of Rap1-Taz1 fusion protein 分子名称: DNA-binding protein rap1,Telomere length regulator taz1 著者 Zhou, Z.R, Wang, F, Chen, Y, Lei, M, Hu, H. 登録日 2010-09-19 公開日 2011-01-12 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 A conserved motif within RAP1 has diversified roles in telomere protection and regulation in different organisms. Nat.Struct.Mol.Biol., 18, 2011
4CI3	Structure of the DDB1-CRBN E3 ubiquitin ligase bound to Pomalidomide 分子名称: DNA DAMAGE-BINDING PROTEIN 1, PROTEIN CEREBLON, S-Pomalidomide, ... 著者 Fischer, E.S, Boehm, K, Thoma, N.H. 登録日 2013-12-05 公開日 2014-07-16 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Structure of the Ddb1-Crbn E3 Ubiquitin Ligase in Complex with Thalidomide. Nature, 512, 2014
4CI2	Structure of the DDB1-CRBN E3 ubiquitin ligase bound to lenalidomide 分子名称: DNA DAMAGE-BINDING PROTEIN 1, PROTEIN CEREBLON, S-Lenalidomide, ... 著者 Fischer, E.S, Boehm, K, Thoma, N.H. 登録日 2013-12-05 公開日 2014-07-16 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Structure of the Ddb1-Crbn E3 Ubiquitin Ligase in Complex with Thalidomide. Nature, 512, 2014
4PZ6	PCE1 guanylyltransferase bound to SER2/SER5 phosphorylated RNA pol II CTD 分子名称: DNA-directed RNA polymerase II subunit rpb1, GUANOSINE, mRNA-capping enzyme subunit alpha 著者 Doamekpor, S.K, Lima, C.D. 登録日 2014-03-28 公開日 2014-06-25 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.406 Å) 主引用文献 How an mRNA capping enzyme reads distinct RNA polymerase II and Spt5 CTD phosphorylation codes. Genes Dev., 28, 2014
2N4Y	Structure and possible function of a G-quadruplex in the long terminal repeat of the proviral HIV-1 genome 分子名称: DNA_(5'-D(*CP*TP*GP*GP*GP*CP*GP*GP*GP*AP*CP*TP*GP*GP*GP*GP*AP*GP*TP*GP*GP*T)-3') 著者 DeNicola, B, Lech, C.J, Heddi, B, Regmi, S, Frasson, I, Perrone, R, Richter, S.N, Phan, A.T. 登録日 2015-07-02 公開日 2016-06-29 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structure and possible function of a G-quadruplex in the long terminal repeat of the proviral HIV-1 genome. Nucleic Acids Res., 44, 2016
1BRN	SUBSITE BINDING IN AN RNASE: STRUCTURE OF A BARNASE-TETRANUCLEOTIDE COMPLEX AT 1.76 ANGSTROMS RESOLUTION 分子名称: DNA (5'-D(*CP*GP*AP*C)-3'), PROTEIN (BARNASE (E.C.3.1.27.-)) 著者 Buckle, A.M, Fersht, A.R. 登録日 1993-11-17 公開日 1994-01-31 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 Subsite binding in an RNase: structure of a barnase-tetranucleotide complex at 1.76-A resolution. Biochemistry, 33, 1994
4CI1	Structure of the DDB1-CRBN E3 ubiquitin ligase bound to thalidomide 分子名称: DNA DAMAGE-BINDING PROTEIN 1, PROTEIN CEREBLON, S-Thalidomide, ... 著者 Fischer, E.S, Boehm, K, Thoma, N.H. 登録日 2013-12-05 公開日 2014-07-16 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.98 Å) 主引用文献 Structure of the Ddb1-Crbn E3 Ubiquitin Ligase in Complex with Thalidomide. Nature, 512, 2014
315D	CRYSTAL STRUCTURE OF AN ALTERNATING OCTAMER R(GUAUGUA)D(C) WITH ADJACENT G-U WOBBLE PAIRS 分子名称: DNA/RNA (5'-R(*GP*UP*AP*UP*GP*UP*AP*)-D(*C)-3') 著者 Biswas, R, Wahl, M.C, Ban, C, Sundaralingam, M. 登録日 1997-02-26 公開日 1997-09-23 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.38 Å) 主引用文献 Crystal structure of an alternating octamer r(GUAUGUA)dC with adjacent G x U wobble pairs J.Mol.Biol., 267, 1997
8JLD	Cryo-EM structure of the 145 bp human nucleosome containing acetylated H3 tail 分子名称: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Oishi, T, Hatazawa, S, Kujirai, T, Kato, J, Kobayashi, Y, Ogasawara, M, Akatsu, M, Takizawa, Y, Kurumizaka, H. 登録日 2023-06-02 公開日 2023-10-04 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (2.48 Å) 主引用文献 Contributions of histone tail clipping and acetylation in nucleosome transcription by RNA polymerase II. Nucleic Acids Res., 51, 2023
8JLA	Cryo-EM structure of the human nucleosome lacking N-terminal region of H2A, H2B, H3, and H4 分子名称: DNA (193-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Oishi, T, Hatazawa, S, Kujirai, T, Kato, J, Kobayashi, Y, Ogasawara, M, Akatsu, M, Takizawa, Y, Kurumizaka, H. 登録日 2023-06-02 公開日 2023-10-04 最終更新日 2023-11-08 実験手法 ELECTRON MICROSCOPY (3.44 Å) 主引用文献 Contributions of histone tail clipping and acetylation in nucleosome transcription by RNA polymerase II. Nucleic Acids Res., 51, 2023
8WG5	Cryo-EM structure of USP16 bound to H2AK119Ub nucleosome 分子名称: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type 1-K, ... 著者 Ai, H.S, He, Z.Z, Deng, Z.H, Liu, L. 登録日 2023-09-20 公開日 2023-12-27 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.05 Å) 主引用文献 Structural and mechanistic basis for nucleosomal H2AK119 deubiquitination by single-subunit deubiquitinase USP16. Nat.Struct.Mol.Biol., 2024
6H0F	Structure of DDB1-CRBN-pomalidomide complex bound to IKZF1(ZF2) 分子名称: DNA damage-binding protein 1,DNA damage-binding protein 1,DNA damage-binding protein 1,DNA damage-binding protein 1, DNA-binding protein Ikaros, Protein cereblon, ... 著者 Petzold, G, Bunker, R.D, Thoma, N.H. 登録日 2018-07-09 公開日 2018-11-07 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3.25 Å) 主引用文献 Defining the human C2H2 zinc finger degrome targeted by thalidomide analogs through CRBN. Science, 362, 2018
2LTO	TDRD3 complex 分子名称: DNA-directed RNA polymerase II subunit RPB1, Tudor domain-containing protein 3 著者 Sikorsky, T. 登録日 2012-05-30 公開日 2013-01-16 最終更新日 2023-11-15 実験手法 SOLUTION NMR 主引用文献 Recognition of asymmetrically dimethylated arginine by TDRD3. Nucleic Acids Res., 40, 2012
6MC8	Crystal structure of PprA dimer from Deinococcus deserti 分子名称: DNA repair protein PprA 著者 Szabla, R, Junop, M.S, Rok, M. 登録日 2018-08-30 公開日 2018-09-19 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of PprA from Deinococcus radiodurans To Be Published

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