PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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2DBE	CRYSTAL STRUCTURE OF A BERENIL-DODECANUCLEOTIDE COMPLEX: THE ROLE OF WATER IN SEQUENCE-SPECIFIC LIGAND BINDING 分子名称: BERENIL, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') 著者 Brown, D.G, Sanderson, M.R, Skelly, J.V, Jenkins, T.C, Brown, T, Garman, E, Stuart, D.I, Neidle, S. 登録日 1990-03-19 公開日 1991-07-15 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of a berenil-dodecanucleotide complex: the role of water in sequence-specific ligand binding. EMBO J., 9, 1990
5XVN	E. far Cas1-Cas2/prespacer binary complex 分子名称: CRISPR-associated endonuclease Cas1, CRISPR-associated endoribonuclease Cas2, DNA (28-MER), ... 著者 Xiao, Y, Ng, S, Nam, K.H, Ke, A. 登録日 2017-06-28 公開日 2017-10-04 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (3.25 Å) 主引用文献 How type II CRISPR-Cas establish immunity through Cas1-Cas2-mediated spacer integration. Nature, 550, 2017
5BS3	Crystal Structure of S.A. gyrase in complex with Compound 7 分子名称: (4R)-3-fluoro-4-hydroxy-4-{[(1r,4R)-4-{[(3-oxo-3,4-dihydro-2H-pyrido[3,2-b][1,4]oxazin-6-yl)methyl]amino}-2-oxabicyclo[2.2.2]oct-1-yl]methyl}-4,5-dihydro-7H-pyrrolo[3,2,1-de][1,5]naphthyridin-7-one, DNA gyrase subunit A and B, DNA/RNA (5'-R(P*AP*GP*CP*CP*G)-D(P*T)-R(P*AP*GP*GP*GP*CP*CP*C)-D(P*T)-R(P*AP*CP*GP*GP*C)-D(P*T)-3'), ... 著者 Lu, J, Patel, S, Soisson, S. 登録日 2015-06-01 公開日 2015-06-17 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Tricyclic 1,5-naphthyridinone oxabicyclooctane-linked novel bacterial topoisomerase inhibitors as broad-spectrum antibacterial agents-SAR of left-hand-side moiety (Part-2). Bioorg.Med.Chem.Lett., 25, 2015
1Y9F	Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-allyl Thymidine (T*) 分子名称: 5'-D(*GP*CP*GP*TP*AP*(2AT)P*AP*CP*GP*C)-3') 著者 Egli, M, Minasov, G, Tereshko, V, Pallan, P.S, Teplova, M, Inamati, G.B, Lesnik, E.A, Owens, S.R, Ross, B.S, Prakash, T.P, Manoharan, M. 登録日 2004-12-15 公開日 2005-06-28 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Probing the Influence of Stereoelectronic Effects on the Biophysical Properties of Oligonucleotides: Comprehensive Analysis of the RNA Affinity, Nuclease Resistance, and Crystal Structure of Ten 2'-O-Ribonucleic Acid Modifications. Biochemistry, 44, 2005
1Y8V	Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-propyl Thymidine (T*) 分子名称: 5'-D(*GP*CP*GP*TP*AP*(P2T)P*AP*CP*GP*C)-3' 著者 Egli, M, Minasov, G, Tereshko, V, Pallan, P.S, Teplova, M, Inamati, G.B, Lesnik, E.A, Owens, S.R, Ross, B.S, Prakash, T.P, Manoharan, M. 登録日 2004-12-13 公開日 2005-06-28 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Probing the Influence of Stereoelectronic Effects on the Biophysical Properties of Oligonucleotides: Comprehensive Analysis of the RNA Affinity, Nuclease Resistance, and Crystal Structure of Ten 2'-O-Ribonucleic Acid Modifications. Biochemistry, 44, 2005
2ZJ5	Archaeal DNA helicase Hjm complexed with ADP in form 1 分子名称: ADENOSINE-5'-DIPHOSPHATE, Putative ski2-type helicase, SULFATE ION 著者 Oyama, T, Oka, H, Fujikane, R, Ishino, Y, Morikawa, K. 登録日 2008-02-29 公開日 2009-02-10 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Atomic structures and functional implications of the archaeal RecQ-like helicase Hjm Bmc Struct.Biol., 9, 2009
2ZJA	Archaeal DNA helicase Hjm complexed with AMPPCP in form 2 分子名称: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, Putative ski2-type helicase 著者 Oyama, T, Oka, H, Fujikane, R, Ishino, Y, Morikawa, K. 登録日 2008-02-29 公開日 2009-02-10 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Atomic structures and functional implications of the archaeal RecQ-like helicase Hjm Bmc Struct.Biol., 9, 2009
7JQ7	The Phi-28 gp11 DNA packaging Motor 分子名称: Encapsidation protein, IODIDE ION, SULFATE ION 著者 Morais, M.C, White, M.A, Dill, E. 登録日 2020-08-10 公開日 2021-06-16 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.895 Å) 主引用文献 Atomistic basis of force generation, translocation, and coordination in a viral genome packaging motor. Nucleic Acids Res., 49, 2021
7JQP	The Phi-28 gp11 DNA packaging Motor 分子名称: Encapsidation protein, SULFATE ION 著者 Morais, M.C, White, M.A, Dill, E. 登録日 2020-08-11 公開日 2021-06-16 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.89 Å) 主引用文献 Atomistic basis of force generation, translocation, and coordination in a viral genome packaging motor. Nucleic Acids Res., 49, 2021
7JQ6	The Phi-28 gp11 DNA packaging Motor 分子名称: Encapsidation protein, SULFATE ION 著者 Morais, M.C, White, M.A, Dill, E. 登録日 2020-08-10 公開日 2021-06-16 最終更新日 2021-07-14 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Atomistic basis of force generation, translocation, and coordination in a viral genome packaging motor. Nucleic Acids Res., 49, 2021
2ZJ2	Archaeal DNA helicase Hjm apo state in form 1 分子名称: Putative ski2-type helicase, SULFATE ION 著者 Oyama, T, Oka, H, Fujikane, R, Ishino, Y, Morikawa, K. 登録日 2008-02-29 公開日 2009-02-10 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Atomic structures and functional implications of the archaeal RecQ-like helicase Hjm Bmc Struct.Biol., 9, 2009
2ZJ8	Archaeal DNA helicase Hjm apo state in form 2 分子名称: Putative ski2-type helicase 著者 Oyama, T, Oka, H, Fujikane, R, Ishino, Y, Morikawa, K. 登録日 2008-02-29 公開日 2009-02-10 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Atomic structures and functional implications of the archaeal RecQ-like helicase Hjm Bmc Struct.Biol., 9, 2009
6QZV	DPP9 bound to a dipeptide (MP) from the N-terminus of BRCA2 分子名称: Dipeptidyl peptidase 9, MET-PRO 著者 Ross, B, Geiss-Friedlander, R, Huber, R. 登録日 2019-03-12 公開日 2020-09-30 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Dipeptidyl peptidase 9 triggers BRCA2 degradation by the N-degron pathway to promote DNA-damage repair Biorxiv, 2020
1Y8L	Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(trifluoro)ethyl] Thymidine (T*) 分子名称: 5'-D(*GP*CP*GP*TP*AP*(TFE)P*AP*CP*GP*C)-3'), MAGNESIUM ION, SPERMINE 著者 Egli, M, Minasov, G, Tereshko, V, Pallan, P.S, Teplova, M, Inamati, G.B, Lesnik, E.A, Owens, S.R, Ross, B.S, Prakash, T.P, Manoharan, M. 登録日 2004-12-13 公開日 2005-06-28 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Probing the Influence of Stereoelectronic Effects on the Biophysical Properties of Oligonucleotides: Comprehensive Analysis of the RNA Affinity, Nuclease Resistance, and Crystal Structure of Ten 2'-O-Ribonucleic Acid Modifications. Biochemistry, 44, 2005
1R7M	The homing endonuclease I-SceI bound to its DNA recognition region 分子名称: 5'-D(*CP*AP*CP*GP*CP*TP*AP*GP*GP*GP*AP*TP*AP*AP*CP*AP*GP*GP*GP*TP*AP*AP*TP*AP*C)-3', 5'-D(*GP*GP*TP*AP*TP*TP*AP*CP*CP*CP*TP*GP*TP*TP*AP*TP*CP*CP*CP*TP*AP*GP*CP*GP*T)-3', CALCIUM ION, ... 著者 Moure, C.M, Gimble, F.S, Quiocho, F.A. 登録日 2003-10-21 公開日 2004-10-26 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 The crystal structure of the gene targeting homing endonuclease I-SceI reveals the origins of its target site specificity J.Mol.Biol., 334, 2003
7EYI	Crystal structure of ZBTB7A in complex with gamma-globin -200 sequence element with C-194A mutation 分子名称: BORIC ACID, DNA (5'-D(*AP*TP*AP*GP*GP*GP*CP*CP*CP*CP*TP*TP*CP*CP*CP*AP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*TP*GP*GP*GP*AP*AP*GP*GP*GP*GP*CP*CP*CP*TP*A)-3'), ... 著者 Yang, Y, Shi, Y.Y. 登録日 2021-05-31 公開日 2021-09-01 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.401 Å) 主引用文献 Structural basis for human ZBTB7A action at the fetal globin promoter. Cell Rep, 36, 2021
5OY7	Structure of the 4_601_157 tetranucleosome (P1 form) 分子名称: CHLORIDE ION, DNA (619-MER), Histone H2A, ... 著者 Ekundayo, B, Richmond, T.J, Schalch, T. 登録日 2017-09-07 公開日 2017-09-20 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (5.774 Å) 主引用文献 Capturing Structural Heterogeneity in Chromatin Fibers. J. Mol. Biol., 429, 2017
5CR2	E. coli MazF in complex with single strand DNA substrate analog 分子名称: Endoribonuclease MazF, ssDNA substrate analog 著者 Zorzini, V, Loris, R. 登録日 2015-07-22 公開日 2016-04-06 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Substrate Recognition and Activity Regulation of the Escherichia coli mRNA Endonuclease MazF. J.Biol.Chem., 291, 2016
1D9N	SOLUTION STRUCTURE OF THE METHYL-CPG-BINDING DOMAIN OF THE METHYLATION-DEPENDENT TRANSCRIPTIONAL REPRESSOR MBD1/PCM1 分子名称: METHYL-CPG-BINDING PROTEIN MBD1 著者 Ohki, I, Shimotake, N, Fujita, N, Nakao, M, Shirakawa, M. 登録日 1999-10-28 公開日 2000-10-28 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of the methyl-CpG-binding domain of the methylation-dependent transcriptional repressor MBD1. EMBO J., 18, 1999
5XF4	Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having a 1,2-diphenylethylenediamine linker (S,S-configuration) 分子名称: (1S,2S)-1,2-diphenylethane-1,2-diamine, DNA (145-MER), Histone H2A type 1-B/E, ... 著者 Ma, Z, Adhireksan, Z, Murray, B.S, Dyson, P.J, Davey, C.A. 登録日 2017-04-07 公開日 2017-10-11 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.87 Å) 主引用文献 Nucleosome acidic patch-targeting binuclear ruthenium compounds induce aberrant chromatin condensation Nat Commun, 8, 2017
2FIH	Crystal Structure Analysis of the B-DNA Dodecamer CGCGAA-aU-TCGCG, with Incorporated Arabino-Uridine (aU) 分子名称: 5'-D(*CP*GP*CP*GP*AP*AP*(UAR)P*TP*CP*GP*CP*G)-3', MAGNESIUM ION 著者 Egli, M, Li, F. 登録日 2005-12-29 公開日 2006-05-23 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.13 Å) 主引用文献 2'-Fluoroarabino- and arabinonucleic acid show different conformations, resulting in deviating RNA affinities and processing of their heteroduplexes with RNA by RNase H. Biochemistry, 45, 2006
2FII	Crystal Structure Analysis of the B-DNA Dodecamer CGCGAAT-aU-CGCG, with Incorporated Arabino-Uridin (aU) 分子名称: 5'-D(*CP*GP*CP*GP*AP*AP*TP*(UAR)P*CP*GP*CP*G)-3', MAGNESIUM ION 著者 Egli, M, Li, F. 登録日 2005-12-29 公開日 2006-05-23 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.24 Å) 主引用文献 2'-Fluoroarabino- and arabinonucleic acid show different conformations, resulting in deviating RNA affinities and processing of their heteroduplexes with RNA by RNase H. Biochemistry, 45, 2006
381D	BINDING OF THE MODIFIED DAUNORUBICIN WP401 ADJACENT TO A T-G BASE PAIR INDUCES THE REVERSE WATSON-CRICK CONFORMATION: CRYSTAL STRUCTURES OF THE WP401-TGGCCG AND WP401-CGG[BR5C]CG COMPLEXES 分子名称: 2'-BROMO-4'-EPIDAUNORUBICIN, DNA (5'-D(*TP*GP*(G49)P*CP*CP*G)-3'), DNA (5'-D(*TP*GP*GP*CP*CP*G)-3') 著者 Dutta, R, Gao, Y.-G, Priebe, W, Wang, A.H.-J. 登録日 1998-02-18 公開日 1998-07-13 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Binding of the modified daunorubicin WP401 adjacent to a T-G base pair induces the reverse Watson-Crick conformation: crystal structures of the WP401-TGGCCG and WP401-CGG[br5C]CG complexes. Nucleic Acids Res., 26, 1998
2FIJ	Crystal Structure Analysis of the A-DNA Decamer GCGT-2'OMeA-aU-ACGC, with Incorporated 2'-O-Methylated-Adenosine (2'OMeA) and Arabino-Uridine (aU) 分子名称: 5'-D(*GP*CP*GP*TP*(A2M)P*(UAR)P*AP*CP*GP*C)-3', CHLORIDE ION, COBALT HEXAMMINE(III) 著者 Egli, M, Li, F. 登録日 2005-12-29 公開日 2006-05-23 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.19 Å) 主引用文献 2'-Fluoroarabino- and arabinonucleic acid show different conformations, resulting in deviating RNA affinities and processing of their heteroduplexes with RNA by RNase H. Biochemistry, 45, 2006
2LMC	Structure of T7 transcription factor Gp2-E. coli RNAp jaw domain complex 分子名称: Bacterial RNA polymerase inhibitor, DNA-directed RNA polymerase subunit beta 著者 Liu, M. 登録日 2011-11-29 公開日 2012-03-14 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structural and Mechanistic Basis for the Inhibition of Escherichia coli RNA Polymerase by T7 Gp2. Mol.Cell, 47, 2012

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