Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8EKC
DownloadVisualize
BU of 8ekc by Molmil
Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Rybak, M.Y, Gagnon, M.G.
登録日2022-09-20
公開日2022-12-07
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Insights into the molecular mechanism of translation inhibition by the ribosome-targeting antibiotic thermorubin.
Nucleic Acids Res., 51, 2023
6RHW
DownloadVisualize
BU of 6rhw by Molmil
Crystal structure of human CD11b I-domain (CD11b-I) in complex with Staphylococcus aureus octameric bi-component leukocidin LukGH
分子名称: Beta-channel forming cytolysin, DIMETHYL SULFOXIDE, Integrin alpha-M, ...
著者Trstenjak, N, Milic, D, Djinovic-Carugo, K, Badarau, A.
登録日2019-04-23
公開日2019-12-18
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Molecular mechanism of leukocidin GH-integrin CD11b/CD18 recognition and species specificity.
Proc.Natl.Acad.Sci.USA, 117, 2020
4P5N
DownloadVisualize
BU of 4p5n by Molmil
Structure of CNAG_02591 from Cryptococcus neoformans
分子名称: CADMIUM ION, GLYCEROL, Hypothetical protein CNAG_02591, ...
著者Ramagopal, U.A, McClelland, E.E, Toro, R, Casadevall, A, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC)
登録日2014-03-18
公開日2014-05-28
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献A Small Protein Associated with Fungal Energy Metabolism Affects the Virulence of Cryptococcus neoformans in Mammals.
Plos Pathog., 12, 2016
8H2U
DownloadVisualize
BU of 8h2u by Molmil
X-ray Structure of photosystem I-LHCI super complex from Chlamydomonas reinhardtii.
分子名称: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
著者Tanaka, H, Kubota-Kawai, H, Misumi, Y, Kurisu, G.
登録日2022-10-07
公開日2023-06-14
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Three structures of PSI-LHCI from Chlamydomonas reinhardtii suggest a resting state re-activated by ferredoxin.
Biochim Biophys Acta Bioenerg, 1864, 2023
8UX5
DownloadVisualize
BU of 8ux5 by Molmil
OvsA M401Y/Q430N/A431F from Halomonas utahensis, a hercynine-binding variant with selenoneine-biosynthetic activity
分子名称: FE (III) ION, SODIUM ION, Selenoxide synthase OvsA
著者Ireland, K.A, Davis, K.M.
登録日2023-11-08
公開日2024-07-17
最終更新日2024-09-04
実験手法X-RAY DIFFRACTION (3.06 Å)
主引用文献Discovery of the selenium-containing antioxidant ovoselenol derived from convergent evolution.
Nat.Chem., 2024
6RZL
DownloadVisualize
BU of 6rzl by Molmil
Galectin-3C in complex with trifluoroaryltriazole monothiogalactoside derivative:4(Bromine)
分子名称: (2~{R},3~{R},4~{S},5~{R},6~{R})-2-(3-bromophenyl)sulfanyl-6-(hydroxymethyl)-4-[4-[3,4,5-tris(fluoranyl)phenyl]-1,2,3-triazol-1-yl]oxane-3,5-diol, Galectin-3, THIOCYANATE ION
著者Kumar, R, Verteramo, M.L, Nilsson, U.J, Logan, D.T.
登録日2019-06-13
公開日2020-07-08
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.045 Å)
主引用文献Thermodynamic studies of halogen-bond interactions in galectin-3
to be published
7KDT
DownloadVisualize
BU of 7kdt by Molmil
Human Tom70 in complex with SARS CoV2 Orf9b
分子名称: Mitochondrial import receptor subunit TOM70, ORF9b protein
著者QCRG Structural Biology Consortium
登録日2020-10-09
公開日2020-10-21
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.05 Å)
主引用文献Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms.
Science, 370, 2020
8U5L
DownloadVisualize
BU of 8u5l by Molmil
MAU868, a novel human-derived monoclonal neutralizing antibody targeting BK virus VP1
分子名称: Capsid protein VP1, scFv fragment of the monoclonal antibody MAU868
著者Knapp, M.S, Ornelas, E.
登録日2023-09-12
公開日2024-08-14
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Nonclinical and clinical characterization of MAU868, a novel human-derived monoclonal neutralizing antibody targeting BK polyomavirus VP1.
Am J Transplant, 2024
6USX
DownloadVisualize
BU of 6usx by Molmil
Identification of the Clinical Development Candidate MRTX849, a Covalent KRASG12C Inhibitor for the Treatment of Cancer
分子名称: 1-{4-[2-{[(2S)-1-methylpyrrolidin-2-yl]methoxy}-7-(naphthalen-1-yl)-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4-yl]piperazin-1-yl}propan-1-one, GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, ...
著者Vigers, G.P, Smith, D.J.
登録日2019-10-28
公開日2020-04-22
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献Identification of the Clinical Development CandidateMRTX849, a Covalent KRASG12CInhibitor for the Treatment of Cancer.
J.Med.Chem., 63, 2020
6UT0
DownloadVisualize
BU of 6ut0 by Molmil
Identification of the Clinical Development Candidate MRTX849, a Covalent KRASG12C Inhibitor for the Treatment of Cancer
分子名称: GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Vigers, G.P, Smith, D.J.
登録日2019-10-29
公開日2020-04-22
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Identification of the Clinical Development CandidateMRTX849, a Covalent KRASG12CInhibitor for the Treatment of Cancer.
J.Med.Chem., 63, 2020
6UXF
DownloadVisualize
BU of 6uxf by Molmil
Structure of V. metoecus NucC, hexamer form
分子名称: Vibrio meotecus sp. RC341 NucC
著者Ye, Q, Corbett, K.D.
登録日2019-11-07
公開日2019-12-25
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structure and Mechanism of a Cyclic Trinucleotide-Activated Bacterial Endonuclease Mediating Bacteriophage Immunity.
Mol.Cell, 77, 2020
8HF0
DownloadVisualize
BU of 8hf0 by Molmil
DmDcr-2/R2D2/LoqsPD with 50bp-dsRNA in Dimer state
分子名称: Dicer-2, isoform A, LD06392p, ...
著者Su, S, Wang, J, Wang, H.W, Ma, J.
登録日2022-11-09
公開日2023-09-06
実験手法ELECTRON MICROSCOPY (3.72 Å)
主引用文献Structural mechanism of R2D2 and Loqs-PD synergistic modulation on DmDcr-2 oligomers.
Nat Commun, 14, 2023
6UVM
DownloadVisualize
BU of 6uvm by Molmil
Cocrystal of BRD4(D1) with a methyl carbamate thiazepane inhibitor
分子名称: 1,2-ETHANEDIOL, 1-[(7S)-7-(thiophen-2-yl)-6,7-dihydro-1,4-thiazepin-4(5H)-yl]ethan-1-one, Bromodomain-containing protein 4
著者Johnson, J.A, Pomerantz, W.C.K.
登録日2019-11-03
公開日2020-01-01
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献Evaluating the Advantages of Using 3D-Enriched Fragments for Targeting BET Bromodomains.
Acs Med.Chem.Lett., 10, 2019
6RZH
DownloadVisualize
BU of 6rzh by Molmil
Galectin-3C in complex with para-fluoroaryltriazole galactopyranosyl 1-thio-D-glucopyranoside derivative
分子名称: (2~{S},3~{R},4~{S},5~{S},6~{R})-2-[(2~{S},3~{R},4~{S},5~{R},6~{R})-4-[4-(4-fluorophenyl)-1,2,3-triazol-1-yl]-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]sulfanyl-6-(hydroxymethyl)oxane-3,4,5-triol, CHLORIDE ION, Galectin-3
著者Kumar, R, Peterson, K, Nilsson, U.J, Logan, D.T.
登録日2019-06-13
公開日2020-07-08
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (0.947 Å)
主引用文献Entropy-Entropy Compensation between the Protein, Ligand, and Solvent Degrees of Freedom Fine-Tunes Affinity in Ligand Binding to Galectin-3C.
Jacs Au, 1, 2021
8UL7
DownloadVisualize
BU of 8ul7 by Molmil
The structure of NanH in complex with Neu5Ac
分子名称: 1,2-ETHANEDIOL, N-acetyl-alpha-neuraminic acid, Sialidase
著者Medley, B.J, Boraston, A.B.
登録日2023-10-16
公開日2024-09-04
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献A "terminal" case of glycan catabolism: Structural and enzymatic characterization of the sialidases of Clostridium perfringens.
J.Biol.Chem., 300, 2024
8URL
DownloadVisualize
BU of 8url by Molmil
The Apo NanJ structure from Clostridium perfringens
分子名称: CALCIUM ION, Exo-alpha-sialidase NanJ
著者Medley, B.J, Boraston, A.B.
登録日2023-10-26
公開日2024-09-04
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The apo structure of NanJ from Clostridium perfringens
To Be Published
8UVV
DownloadVisualize
BU of 8uvv by Molmil
The NanJ sialidase catalytic domain in complex with Neu5Ac
分子名称: CHLORIDE ION, Exo-alpha-sialidase NanJ, N-acetyl-alpha-neuraminic acid
著者Medley, B.J, Boraston, A.B.
登録日2023-11-04
公開日2024-09-04
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A "terminal" case of glycan catabolism: Structural and enzymatic characterization of the sialidases of Clostridium perfringens.
J.Biol.Chem., 300, 2024
8UB5
DownloadVisualize
BU of 8ub5 by Molmil
The Apo NanH structure from Clostridium perfringens
分子名称: 1,2-ETHANEDIOL, ACETYL GROUP, Sialidase
著者Medley, B.J, Boraston, A.B.
登録日2023-09-22
公開日2024-09-04
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献A "terminal" case of glycan catabolism: Structural and enzymatic characterization of the sialidases of Clostridium perfringens.
J.Biol.Chem., 300, 2024
8ULE
DownloadVisualize
BU of 8ule by Molmil
The structure of NanH in complex with Neu5,9Ac
分子名称: 1,2-ETHANEDIOL, 9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid, Sialidase
著者Medley, B.J, Boraston, A.B.
登録日2023-10-16
公開日2024-09-04
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献A "terminal" case of glycan catabolism: Structural and enzymatic characterization of the sialidases of Clostridium perfringens.
J.Biol.Chem., 300, 2024
8UM0
DownloadVisualize
BU of 8um0 by Molmil
The structure of NanH in complex with Neu5,7,9Ac(2,6)-LAcNAc
分子名称: 1,2-ETHANEDIOL, 5-acetamido-7,9-di-O-acetyl-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid, Sialidase, ...
著者Medley, B.J, Boraston, A.B.
登録日2023-10-17
公開日2024-09-04
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.46 Å)
主引用文献A "terminal" case of glycan catabolism: Structural and enzymatic characterization of the sialidases of Clostridium perfringens.
J.Biol.Chem., 300, 2024
8UW1
DownloadVisualize
BU of 8uw1 by Molmil
Cryo-EM structure of DNMT3A1 UDR in complex with H2AK119Ub-nucleosome
分子名称: DNA (146-MER), DNA (cytosine-5)-methyltransferase 3A, Histone H2A, ...
著者Gretarsson, K, Abini-Agbomson, S, Armache, K.-J, Lu, C.
登録日2023-11-05
公開日2024-09-11
実験手法ELECTRON MICROSCOPY (2.88 Å)
主引用文献Cancer-associated DNA hypermethylation of Polycomb targets requires DNMT3A dual recognition of histone H2AK119 ubiquitination and the nucleosome acidic patch.
Sci Adv, 10, 2024
6V4L
DownloadVisualize
BU of 6v4l by Molmil
Structure of TrkH-TrkA in complex with ATPgammaS
分子名称: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, Potassium uptake protein TrkA, Trk system potassium uptake protein TrkH
著者Zhou, M, Zhang, H.
登録日2019-11-27
公開日2020-02-12
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.8 Å)
主引用文献TrkA undergoes a tetramer-to-dimer conversion to open TrkH which enables changes in membrane potential.
Nat Commun, 11, 2020
8EXH
DownloadVisualize
BU of 8exh by Molmil
Agrobacterium tumefaciens Tpilus
分子名称: (14S,17R)-20-amino-17-hydroxy-11,17-dioxo-12,16,18-trioxa-17lambda~5~-phosphaicosan-14-yl tetradecanoate, Protein virB2
著者Beltran, L.C, Egelman, E.H.
登録日2022-10-25
公開日2023-03-22
最終更新日2024-09-25
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Archaeal DNA-import apparatus is homologous to bacterial conjugation machinery
Nat Commun, 14, 2023
6UXG
DownloadVisualize
BU of 6uxg by Molmil
Structure of V. metoecus NucC, trimer form
分子名称: SULFATE ION, Vibrio metoecus sp. RC341 NucC
著者Ye, Q, Corbett, K.D.
登録日2019-11-07
公開日2019-12-25
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Structure and Mechanism of a Cyclic Trinucleotide-Activated Bacterial Endonuclease Mediating Bacteriophage Immunity.
Mol.Cell, 77, 2020
8HI9
DownloadVisualize
BU of 8hi9 by Molmil
SARS-CoV-2 3CL protease (3CLpro) in complex with Robinetin
分子名称: 3,7-bis(oxidanyl)-2-[3,4,5-tris(oxidanyl)phenyl]chromen-4-one, 3C-like proteinase nsp5
著者Su, H.X, Xie, H, Li, M.J, Xu, Y.C.
登録日2022-11-19
公開日2023-10-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.28 Å)
主引用文献Discovery of Polyphenolic Natural Products as SARS-CoV-2 M pro Inhibitors for COVID-19.
Pharmaceuticals, 16, 2023

226707

件を2024-10-30に公開中

PDB statisticsPDBj update infoContact PDBjnumon