PDB: 46200 件ウェブページステータス検索Chemie searchBIRD

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3QEV	RB69 DNA Polymerase (L561A/S565G/Y567A) Ternary Complex with dCTP Opposite dT 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), ... 著者 Xia, S, Konigsberg, W.H, Wang, J. 登録日 2011-01-20 公開日 2012-01-25 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.77 Å) 主引用文献 Hydrogen-Bonding Capability of Difluorotoluene Nucleoside in Replication Complexes To be Published
5FHH	Structure of human Pif1 helicase domain residues 200-641 分子名称: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent DNA helicase PIF1, TETRAFLUOROALUMINATE ION 著者 Zhou, X, Ren, W, Bharath, S.R, Song, H. 登録日 2015-12-22 公開日 2016-03-30 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Structural and Functional Insights into the Unwinding Mechanism of Bacteroides sp Pif1 Cell Rep, 14, 2016
1Y77	Complete RNA Polymerase II elongation complex with substrate analogue GMPCPP 分子名称: 5'-D(*AP*AP*GP*TP*AP*CP*T)-3', 5'-D(P*AP*GP*TP*AP*CP*TP*TP*AP*CP*T*CP*GP*CP*CP*TP*GP*GP*TP*CP*TP*G)-3', 5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3', ... 著者 Kettenberger, H, Armache, K.-J, Cramer, P. 登録日 2004-12-08 公開日 2005-01-04 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (4.5 Å) 主引用文献 Complete RNA Polymerase II Elongation Complex Structure and Its Interactions with NTP and TFIIS Mol.Cell, 16, 2004
1SAX	Three-dimensional structure of s.aureus methicillin-resistance regulating transcriptional repressor meci in complex with 25-bp ds-DNA 分子名称: 5'-d(CAAAATTACAACTGTAATATCGGAG)-3', 5'-d(GCTCCGATATTACAGTTGTAATTTT)-3', Methicillin resistance regulatory protein mecI, ... 著者 Garcia-Castellanos, R, Mallorqui-Fernandez, G, Marrero, A, Potempa, J, Coll, M, Gomis-Ruth, F.X. 登録日 2004-02-09 公開日 2004-04-27 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 On the transcriptional regulation of methicillin resistance: MecI repressor in complex with its operator J.Biol.Chem., 279, 2004
4LMG	Crystal structure of AFT2 in complex with DNA 分子名称: 5'-D(*AP*AP*GP*TP*GP*CP*AP*CP*CP*CP*AP*TP*T)-3', 5'-D(*TP*AP*AP*TP*GP*GP*GP*TP*GP*CP*AP*CP*T)-3', Iron-regulated transcriptional activator AFT2, ... 著者 Poor, C.B, Sanishvili, R, Schuermann, J.P, He, C. 登録日 2013-07-10 公開日 2014-03-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Molecular mechanism and structure of the Saccharomyces cerevisiae iron regulator Aft2. Proc.Natl.Acad.Sci.USA, 111, 2014
4HTU	Structure of 5-chlorouracil modified A:U base pair 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*(UCL)P*CP*GP*CP*G)-3'), GLYCEROL, ... 著者 Patra, A, Egli, M. 登録日 2012-11-01 公開日 2012-12-19 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.489 Å) 主引用文献 Structure, stability and function of 5-chlorouracil modified A:U and G:U base pairs. Nucleic Acids Res., 41, 2013
1LFU	NMR Solution Structure of the Extended PBX Homeodomain Bound to DNA 分子名称: 5'-D(*GP*CP*GP*CP*AP*TP*GP*AP*TP*TP*GP*CP*CP*C)-3', 5'-D(*GP*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*CP*GP*C)-3', homeobox protein PBX1 著者 Sprules, T, Green, N, Featherstone, M, Gehring, K. 登録日 2002-04-12 公開日 2003-01-14 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Lock and Key Binding of the HOX YPWM Peptide to the PBX Homeodomain J.Biol.Chem., 278, 2003
3QEW	RB69 DNA Polymerase (L561A/S565G/Y567A) Ternary Complex with dDTP Opposite dT 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), ... 著者 Xia, S, Konigsberg, W.H, Wang, J. 登録日 2011-01-20 公開日 2012-01-25 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.84 Å) 主引用文献 Hydrogen-Bonding Capability of Difluorotoluene Nucleoside in Replication Complexes To be Published
4A09	Structure of hsDDB1-drDDB2 bound to a 15 bp CPD-duplex (purine at D-1 position) at 3.1 A resolution (CPD 2) 分子名称: 5'-D(*CP*CP*TP*GP*CP*TP*CP*CP*TP*TP*TP*CP*AP*CP*CP*C)-3', 5'-D(*GP*GP*TP*GP*AP*AP*AP*(TTD)P*AP*GP*CP*AP*GP*GP)-3', CALCIUM ION, ... 著者 Scrima, A, Fischer, E.S, Iwai, S, Gut, H, Thoma, N.H. 登録日 2011-09-08 公開日 2011-11-30 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 The Molecular Basis of Crl4(Ddb2/Csa) Ubiquitin Ligase Architecture, Targeting, and Activation Cell(Cambridge,Mass.), 147, 2011
5JKT	vaccinia virus D4 P173G mutant /A20(1-50) 分子名称: ACETATE ION, DNA polymerase processivity factor component A20, SULFATE ION, ... 著者 Contesto-Richefeu, C, Tarbouriech, N, Brazzolotto, X, Burmeister, W.P, Peyrefitte, C.N, Iseni, F. 登録日 2016-04-26 公開日 2016-09-14 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.49 Å) 主引用文献 Structural analysis of point mutations at the Vaccinia virus A20/D4 interface. Acta Crystallogr.,Sect.F, 72, 2016
7S8D	Structure of DNA-free SgrAI 分子名称: CALCIUM ION, SgraIR restriction enzyme 著者 Horton, N.C. 登録日 2021-09-17 公開日 2022-08-24 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.02 Å) 主引用文献 Pretransition state and apo structures of the filament-forming enzyme SgrAI elucidate mechanisms of activation and substrate specificity. J.Biol.Chem., 298, 2022
6N3A	SegA-long, conformation of TDP-43 low complexity domain segment A long 分子名称: TAR DNA-binding protein 43, segA long small 著者 Cao, Q, Boyer, D.R, Sawaya, M.R, Eisenberg, D.S. 登録日 2018-11-14 公開日 2019-06-26 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Cryo-EM structures of four polymorphic TDP-43 amyloid cores. Nat.Struct.Mol.Biol., 26, 2019
6N3C	SegB, conformation of TDP-43 low complexity domain segment A 分子名称: TAR DNA-binding protein 43 著者 Cao, Q, Boyer, D.R, Sawaya, M.R, Eisenberg, D.S. 登録日 2018-11-14 公開日 2019-06-26 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Cryo-EM structures of four polymorphic TDP-43 amyloid cores. Nat.Struct.Mol.Biol., 26, 2019
6N3B	SegA-asym, conformation of TDP-43 low complexity domain segment A asym 分子名称: TAR DNA-binding protein 43 著者 Cao, Q, Boyer, D.R, Sawaya, M.R, Eisenberg, D.S. 登録日 2018-11-14 公開日 2019-06-26 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Cryo-EM structures of four polymorphic TDP-43 amyloid cores. Nat.Struct.Mol.Biol., 26, 2019
6O2L	NMR structure of the 2:1 complex of a carbazole derivative BMVC bound to c-MYC G-quadruplex 分子名称: 3,6-bis[(E)-2-(1-methylpyridin-1-ium-4-yl)ethenyl]-9H-carbazole, DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3') 著者 Lin, C, Liu, W, Yang, D. 登録日 2019-02-24 公開日 2019-10-23 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structures of 1:1 and 2:1 complexes of BMVC and MYC promoter G-quadruplex reveal a mechanism of ligand conformation adjustment for G4-recognition. Nucleic Acids Res., 47, 2019
6J9C	Crystal structure of Arabidopsis thaliana transcription factor LEC2-DNA complex 分子名称: B3 domain-containing transcription factor LEC2, DNA (5'-D(*CP*AP*AP*TP*CP*CP*AP*TP*GP*CP*AP*GP*AP*AP*T)-3'), DNA (5'-D(*GP*AP*TP*TP*CP*TP*GP*CP*AP*TP*GP*GP*AP*TP*T)-3') 著者 Hu, H, Du, J. 登録日 2019-01-22 公開日 2019-05-29 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.102 Å) 主引用文献 Embryonic resetting of the parental vernalized state by two B3 domain transcription factors in Arabidopsis. Nat.Plants, 5, 2019
6J9B	Arabidopsis FUS3-DNA complex 分子名称: B3 domain-containing transcription factor FUS3, DNA (5'-D(*AP*AP*TP*CP*CP*AP*TP*GP*CP*AP*GP*AP*AP*TP*C)-3'), DNA (5'-D(*AP*TP*TP*CP*TP*GP*CP*AP*TP*GP*GP*AP*TP*TP*G)-3') 著者 Hu, H, Du, J. 登録日 2019-01-22 公開日 2019-05-29 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Embryonic resetting of the parental vernalized state by two B3 domain transcription factors in Arabidopsis. Nat.Plants, 5, 2019
1T2T	Crystal structure of the DNA-binding domain of intron endonuclease I-TevI with operator site 分子名称: 5'-D(*AP*AP*TP*TP*AP*AP*AP*GP*GP*GP*CP*AP*GP*TP*CP*CP*TP*AP*CP*AP*A)-3', 5'-D(*TP*TP*TP*GP*TP*AP*GP*GP*AP*CP*TP*GP*CP*CP*CP*TP*TP*TP*AP*AP*T)-3', Intron-associated endonuclease 1, ... 著者 Edgell, D.R, Derbyshire, V, Van Roey, P, LaBonne, S, Stanger, M.J, Li, Z, Boyd, T.M, Shub, D.A, Belfort, M. 登録日 2004-04-22 公開日 2004-09-07 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Intron-encoded homing endonuclease I-TevI also functions as a transcriptional autorepressor. Nat.Struct.Mol.Biol., 11, 2004
3Q1M	Crystal Structure of BmrR Dimer bound to DNA and the ligand 4-amino-quinaldine 分子名称: 2-methylquinolin-4-amine, 23 bp promoter DNA, Multidrug-efflux transporter 1 regulator 著者 Bachas, S, Eginton, C, Gunio, G, Wade, H. 登録日 2010-12-17 公開日 2011-06-15 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structural contributions to multidrug recognition in the multidrug resistance (MDR) gene regulator, BmrR. Proc.Natl.Acad.Sci.USA, 108, 2011
7C0M	Human cGAS-nucleosome complex 分子名称: Cyclic GMP-AMP synthase, DNA (145-MER), Histone H2A type 1-B/E, ... 著者 Kujirai, T, Zierhut, C, Takizawa, Y, Kim, R, Negishi, L, Uruma, N, Hirai, S, Funabiki, H, Kurumizaka, H. 登録日 2020-05-01 公開日 2020-09-16 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structural basis for the inhibition of cGAS by nucleosomes. Science, 370, 2020
7F25	Crystal structure of SSB from Salmonella enterica serovar Typhimurium LT2. 分子名称: Single-stranded DNA-binding protein 1 著者 Luo, R.H, Huang, Y.H, Huang, C.Y. 登録日 2021-06-10 公開日 2022-05-04 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.87 Å) 主引用文献 Crystal Structure of an SSB Protein from Salmonella enterica and Its Inhibition by Flavanonol Taxifolin. Int J Mol Sci, 23, 2022
8OUY	Human RAD51B-RAD51C-RAD51D-XRCC2 (BCDX2) complex, 3.4 A resolution 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, DNA repair protein RAD51 homolog 2, ... 著者 Greenhough, L.A, Liang, C.C, West, S.C. 登録日 2023-04-25 公開日 2023-06-21 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure and function of the RAD51B-RAD51C-RAD51D-XRCC2 tumour suppressor. Nature, 619, 2023
4Q47	Structure of the DrRecQ Catalytic Core in complex with ADP 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA helicase RecQ, ZINC ION 著者 Chen, S.C, Yang, C.S, Chen, Y. 登録日 2014-04-14 公開日 2015-05-20 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.899 Å) 主引用文献 Crystal structure of Deinococcus radiodurans RecQ helicase catalytic core domain: the interdomain flexibility. Biomed Res Int, 2014, 2014
1P6R	Solution structure of the DNA binding domain of the repressor BlaI. 分子名称: Penicillinase repressor 著者 Melckebeke, H.V, Vreuls, C, Gans, P, Llabres, G, Filee, P, Joris, B, Simorre, J.P. 登録日 2003-04-30 公開日 2003-12-09 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structural study of BlaI: implications for the repression of genes involved in beta-lactam antibiotic resistance. J.Mol.Biol., 333, 2003
6ZUE	Crystal structure of human DDB1 bound to human DCAF1 (amino acid residues 1046-1396) 分子名称: DDB1- and CUL4-associated factor 1, DNA damage-binding protein 1 著者 Schwefel, D, Taylor, I.A. 登録日 2020-07-22 公開日 2021-07-28 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (3.094 Å) 主引用文献 Structural insights into Cullin4-RING ubiquitin ligase remodelling by Vpr from simian immunodeficiency viruses. Plos Pathog., 17, 2021

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