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1POG
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SOLUTION STRUCTURE OF THE OCT-1 POU-HOMEO DOMAIN DETERMINED BY NMR AND RESTRAINED MOLECULAR DYNAMICS
分子名称: OCT-1 POU HOMEODOMAIN DNA-BINDING PROTEIN
著者Cox, M, Van Tilborg, P.J.A, De Laat, W, Boelens, R, Van Leeuwen, H.C, Van Der Vliet, P.C, Kaptein, R.
登録日1994-10-12
公開日1995-07-31
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of the Oct-1 POU homeodomain determined by NMR and restrained molecular dynamics.
J.Biomol.NMR, 6, 1995
1AZ3
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ECORV ENDONUCLEASE, UNLIGANDED, FORM B
分子名称: ECORV ENDONUCLEASE
著者Perona, J, Martin, A.
登録日1997-11-24
公開日1998-05-27
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Conformational transitions and structural deformability of EcoRV endonuclease revealed by crystallographic analysis.
J.Mol.Biol., 273, 1997
4NB3
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Crystal structure of RPA70N in complex with a 3,4 dichlorophenylalanine ATRIP derived peptide
分子名称: 3,4 dichlorophenylalanine ATRIP derived peptide, Replication protein A 70 kDa DNA-binding subunit
著者Feldkamp, M.D, Frank, A.O, Vangamudi, B, Souza-Fagundes, E.M, Luzwik, J.W, Cortez, D, Olejniczak, O.T, Waterson, A.G, Rossanese, O.W, Fesik, S.W, Chazin, W.J.
登録日2013-10-22
公開日2014-02-26
最終更新日2024-07-10
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Discovery of a Potent Stapled Helix Peptide That Binds to the 70N Domain of Replication Protein A.
J.Med.Chem., 57, 2014
1AZ4
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ECORV ENDONUCLEASE, UNLIGANDED, FORM B, T93A MUTANT
分子名称: ECORV ENDONUCLEASE
著者Perona, J, Martin, A.
登録日1997-11-24
公開日1998-05-27
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Conformational transitions and structural deformability of EcoRV endonuclease revealed by crystallographic analysis.
J.Mol.Biol., 273, 1997
2Q2E
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BU of 2q2e by Molmil
Crystal structure of the topoisomerase VI holoenzyme from Methanosarcina mazei
分子名称: Type 2 DNA topoisomerase 6 subunit B, Type II DNA topoisomerase VI subunit A
著者Corbett, K.D, Benedetti, P, Berger, J.M.
登録日2007-05-28
公開日2007-07-10
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (4 Å)
主引用文献Holoenzyme assembly and ATP-mediated conformational dynamics of topoisomerase VI
Nat.Struct.Mol.Biol., 14, 2007
1VND
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BU of 1vnd by Molmil
VND/NK-2 PROTEIN (HOMEODOMAIN), NMR
分子名称: VND/NK-2 PROTEIN
著者Tsao, D.H.H, Gruschus, J.M, Wang, L.-H, Nirenberg, M, Ferretti, J.A.
登録日1996-05-22
公開日1996-11-08
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献The three-dimensional solution structure of the NK-2 homeodomain from Drosophila.
J.Mol.Biol., 251, 1995
1S10
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BU of 1s10 by Molmil
Snapshots of replication through an abasic lesion: structural basis for base substitution and frameshift
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3', 5'-D(*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', ...
著者Ling, H, Boudsocq, F, Woodgate, R, Yang, W.
登録日2004-01-05
公開日2004-03-30
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Snapshots of Replication through an Abasic Lesion; Structural Basis for Base Substitutions and Frameshifts.
Mol.Cell, 13, 2004
4LMG
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BU of 4lmg by Molmil
Crystal structure of AFT2 in complex with DNA
分子名称: 5'-D(*AP*AP*GP*TP*GP*CP*AP*CP*CP*CP*AP*TP*T)-3', 5'-D(*TP*AP*AP*TP*GP*GP*GP*TP*GP*CP*AP*CP*T)-3', Iron-regulated transcriptional activator AFT2, ...
著者Poor, C.B, Sanishvili, R, Schuermann, J.P, He, C.
登録日2013-07-10
公開日2014-03-05
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Molecular mechanism and structure of the Saccharomyces cerevisiae iron regulator Aft2.
Proc.Natl.Acad.Sci.USA, 111, 2014
1S0N
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Snapshots of replication through an abasic lesion: structural basis for base substitution and frameshift
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*CP*AP*CP*TP*GP*AP*TP*CP*AP*CP*G)-3', 5'-D(*TP*AP*CP*GP*AP*CP*GP*TP*GP*AP*TP*CP*AP*GP*TP*GP*CP*C)-3', ...
著者Ling, H, Boudsocq, F, Woodgate, R, Yang, W.
登録日2003-12-31
公開日2004-03-30
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Snapshots of Replication through an Abasic Lesion; Structural Basis for Base Substitutions and Frameshifts.
Mol.Cell, 13, 2004
6F07
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BU of 6f07 by Molmil
CBF3 Core Complex
分子名称: Centromere DNA-binding protein complex CBF3 subunit B, Suppressor of kinetochore protein 1, ZINC ION
著者Leber, V, Singleton, M.R.
登録日2017-11-17
公開日2017-12-13
最終更新日2019-12-11
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Structural basis for assembly of the CBF3 kinetochore complex.
EMBO J., 37, 2018
1S0O
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BU of 1s0o by Molmil
Snapshots of replication through an abasic lesion: structural basis for base substitution and frameshift
分子名称: 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*C)-3', 5'-D(*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', CALCIUM ION, ...
著者Ling, H, Boudsocq, F, Woodgate, R, Yang, W.
登録日2003-12-31
公開日2004-03-30
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Snapshots of Replication through an Abasic Lesion; Structural Basis for Base Substitutions and Frameshifts.
Mol.Cell, 13, 2004
7TR9
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BU of 7tr9 by Molmil
Cascade complex from type I-A CRISPR-Cas system
分子名称: CRISPR-associated endonuclease Cas3-HD, CRISPR-associated helicase Cas3, Cas11a, ...
著者Hu, C, Ni, D, Nam, K.H, Majumdar, S, McLean, J, Stahlberg, H, Terns, M, Ke, A.
登録日2022-01-28
公開日2022-08-10
最終更新日2022-08-24
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Allosteric control of type I-A CRISPR-Cas3 complexes and establishment as effective nucleic acid detection and human genome editing tools.
Mol.Cell, 82, 2022
7A08
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BU of 7a08 by Molmil
CryoEM Structure of cGAS Nucleosome complex
分子名称: Cyclic GMP-AMP synthase, Histone H2A type 1-C, Histone H2B type 1-C/E/F/G/I, ...
著者Michalski, S, de Oliveira Mann, C.C, Witte, G, Bartho, J, Lammens, K, Hopfner, K.P.
登録日2020-08-07
公開日2020-09-23
最終更新日2021-02-10
実験手法ELECTRON MICROSCOPY (3.11 Å)
主引用文献Structural basis for sequestration and autoinhibition of cGAS by chromatin.
Nature, 587, 2020
4NB5
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BU of 4nb5 by Molmil
Crystal Structure of a transcriptional regulator
分子名称: 1,3-dihydroxypropan-2-yl octadecanoate, DNA binding protein
著者Su, C.-C, Radhakrishnan, A, Yu, E.W.
登録日2013-10-22
公開日2014-04-23
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.641 Å)
主引用文献Crystal Structure of the Transcriptional Regulator Rv0678 of Mycobacterium tuberculosis.
J.Biol.Chem., 289, 2014
1ODD
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BU of 1odd by Molmil
OMPR C-TERMINAL DOMAIN (OMPR-C) FROM ESCHERICHIA COLI
分子名称: TRANSCRIPTIONAL REGULATORY PROTEIN OMPR
著者Kondou, H, Nakagawa, A, Tanaka, I.
登録日1996-10-31
公開日1997-05-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Escherichia coli positive regulator OmpR has a large loop structure at the putative RNA polymerase interaction site.
Nat.Struct.Biol., 4, 1997
8OUZ
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BU of 8ouz by Molmil
Human RAD51B-RAD51C-RAD51D-XRCC2 (BCDX2) complex, 2.2 A resolution
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, DNA repair protein RAD51 homolog 2, ...
著者Greenhough, L.A, Liang, C.C, West, S.C.
登録日2023-04-25
公開日2023-06-21
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (2.2 Å)
主引用文献Structure and function of the RAD51B-RAD51C-RAD51D-XRCC2 tumour suppressor.
Nature, 619, 2023
1LFU
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BU of 1lfu by Molmil
NMR Solution Structure of the Extended PBX Homeodomain Bound to DNA
分子名称: 5'-D(*GP*CP*GP*CP*AP*TP*GP*AP*TP*TP*GP*CP*CP*C)-3', 5'-D(*GP*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*CP*GP*C)-3', homeobox protein PBX1
著者Sprules, T, Green, N, Featherstone, M, Gehring, K.
登録日2002-04-12
公開日2003-01-14
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Lock and Key Binding of the HOX YPWM Peptide to the PBX Homeodomain
J.Biol.Chem., 278, 2003
1Y1W
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Complete RNA Polymerase II elongation complex
分子名称: 5'-D(*AP*AP*GP*TP*AP*CP*T)-3', 5'-D(P*AP*GP*TP*AP*CP*TP*TP*AP*CP*GP*CP*CP*TP*GP*GP*TP*CP*AP*T)-3', 5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3', ...
著者Cramer, P, Kettenberger, H, Armache, K.-J.
登録日2004-11-19
公開日2005-01-04
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (4 Å)
主引用文献Complete RNA Polymerase II Elongation Complex Structure and Its Interactions with NTP and TFIIS
Mol.Cell, 16, 2004
1SAX
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BU of 1sax by Molmil
Three-dimensional structure of s.aureus methicillin-resistance regulating transcriptional repressor meci in complex with 25-bp ds-DNA
分子名称: 5'-d(CAAAATTACAACTGTAATATCGGAG)-3', 5'-d(GCTCCGATATTACAGTTGTAATTTT)-3', Methicillin resistance regulatory protein mecI, ...
著者Garcia-Castellanos, R, Mallorqui-Fernandez, G, Marrero, A, Potempa, J, Coll, M, Gomis-Ruth, F.X.
登録日2004-02-09
公開日2004-04-27
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献On the transcriptional regulation of methicillin resistance: MecI repressor in complex with its operator
J.Biol.Chem., 279, 2004
2Z90
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Crystal Structure of the Second Dps from Mycobacterium smegmatis
分子名称: CHLORIDE ION, FE (II) ION, MAGNESIUM ION, ...
著者Roy, S, Saraswathi, R, Chatterji, D, Vijayan, M.
登録日2007-09-13
公開日2008-04-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural studies on the second Mycobacterium smegmatis Dps: invariant and variable features of structure, assembly and function.
J.Mol.Biol., 375, 2008
8GYK
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CryoEM structure of the RAD51_ADP filament
分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA repair protein RAD51 homolog 1, MAGNESIUM ION
著者Miki, Y, Luo, S.C, Ho, M.C.
登録日2022-09-22
公開日2023-08-30
実験手法ELECTRON MICROSCOPY (3.14 Å)
主引用文献A RAD51-ADP double filament structure unveils the mechanism of filament dynamics in homologous recombination.
Nat Commun, 14, 2023
3QEX
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BU of 3qex by Molmil
RB69 DNA Polymerase (L561A/S565G/Y567A) Ternary Complex with dGTP Opposite dT
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), ...
著者Xia, S, Konigsberg, W.H, Wang, J.
登録日2011-01-20
公開日2012-01-25
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Hydrogen-Bonding Capability of Difluorotoluene Nucleoside in Replication Complexes
To be Published
3QET
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RB69 DNA Polymerase (L561A/S565G/Y567A) Ternary Complex with dTTP Opposite dT
分子名称: CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*TP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), ...
著者Xia, S, Konigsberg, W.H, Wang, J.
登録日2011-01-20
公開日2012-01-25
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Hydrogen-Bonding Capability of Difluorotoluene Nucleoside in Replication Complexes
To be Published
3QEV
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RB69 DNA Polymerase (L561A/S565G/Y567A) Ternary Complex with dCTP Opposite dT
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), ...
著者Xia, S, Konigsberg, W.H, Wang, J.
登録日2011-01-20
公開日2012-01-25
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Hydrogen-Bonding Capability of Difluorotoluene Nucleoside in Replication Complexes
To be Published
6N3A
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SegA-long, conformation of TDP-43 low complexity domain segment A long
分子名称: TAR DNA-binding protein 43, segA long small
著者Cao, Q, Boyer, D.R, Sawaya, M.R, Eisenberg, D.S.
登録日2018-11-14
公開日2019-06-26
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Cryo-EM structures of four polymorphic TDP-43 amyloid cores.
Nat.Struct.Mol.Biol., 26, 2019

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