PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

---

2MKO	G-triplex structure and formation propensity 分子名称: DNA_(5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*G)-3'), POTASSIUM ION 著者 Cerofolini, L, Fragai, M, Giachetti, A, Limongelli, V, Luchinat, C, Novellino, E, Parrinello, M, Randazzo, A. 登録日 2014-02-11 公開日 2014-11-19 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 G-triplex structure and formation propensity. Nucleic Acids Res., 42, 2014
2M27	Major G-quadruplex structure formed in human VEGF promoter, a monomeric parallel-stranded quadruplex 分子名称: DNA_(5'-D(*CP*GP*GP*GP*GP*CP*GP*GP*GP*CP*CP*TP*TP*GP*GP*GP*CP*GP*GP*GP*GP*T)-3')_ 著者 Agrawal, P, Hatzakis, E, Guo, K, Carver, M, Yang, D. 登録日 2012-12-14 公開日 2013-09-18 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution structure of the major G-quadruplex formed in the human VEGF promoter in K+: insights into loop interactions of the parallel G-quadruplexes. Nucleic Acids Res., 41, 2013
8JL0	Cryo-EM structure of the prokaryotic SPARSA system complex 分子名称: DNA (5'-D(P*AP*CP*GP*AP*CP*GP*TP*CP*TP*AP*AP*GP*AP*AP*AP*CP*CP*AP*TP*TP*AP*T)-3'), NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Piwi domain protein, ... 著者 Xu, X, Zhen, X, Long, F. 登録日 2023-06-02 公開日 2024-01-24 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural basis of antiphage immunity generated by a prokaryotic Argonaute-associated SPARSA system. Nat Commun, 15, 2024
4BHC	CRYSTAL STRUCTURE OF THE M. TUBERCULOSIS O6-METHYLGUANINE METHYLTRANSFERASE R37L VARIANT 分子名称: METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE 著者 Miggiano, R, Casazza, V, Garavaglia, S, Ciaramella, M, Perugino, G, Rizzi, M, Rossi, F. 登録日 2013-04-02 公開日 2013-04-17 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Biochemical and Structural Studies on the M. Tuberculosis O6-Methylguanine Methyltransferase and Mutated Variants. J.Bacteriol., 195, 2013
8D7U	Cereblon~DDB1 bound to CC-92480 with DDB1 in the linear conformation 分子名称: DNA damage-binding protein 1, Mezigdomide, Protein cereblon, ... 著者 Watson, E.R, Lander, G.C. 登録日 2022-06-07 公開日 2022-07-20 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Molecular glue CELMoD compounds are regulators of cereblon conformation. Science, 378, 2022
8D7Y	Cereblon-DDB1 in the Apo form with DDB1 in the twisted conformation 分子名称: DNA damage-binding protein 1, Protein cereblon, ZINC ION 著者 Watson, E.R, Lander, G.C. 登録日 2022-06-07 公開日 2022-07-20 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Molecular glue CELMoD compounds are regulators of cereblon conformation. Science, 378, 2022
8D7W	Cereblon~DDB1 bound to CC-92480 with DDB1 in the hinged conformation 分子名称: DNA damage-binding protein 1, Mezigdomide, Protein cereblon, ... 著者 Watson, E.R, Lander, G.C. 登録日 2022-06-07 公開日 2022-07-20 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Molecular glue CELMoD compounds are regulators of cereblon conformation. Science, 378, 2022
8CVP	Cereblon-DDB1 in the Apo form 分子名称: DNA damage-binding protein 1, Protein cereblon, ZINC ION 著者 Watson, E.R, Lander, G.C. 登録日 2022-05-18 公開日 2022-07-20 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Molecular glue CELMoD compounds are regulators of cereblon conformation. Science, 378, 2022
8D7V	Cereblon~DDB1 bound to CC-92480 with DDB1 in the twisted conformation 分子名称: DNA damage-binding protein 1, Mezigdomide, Protein cereblon, ... 著者 Watson, E.R, Lander, G.C. 登録日 2022-06-07 公開日 2022-07-20 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Molecular glue CELMoD compounds are regulators of cereblon conformation. Science, 378, 2022
8D7X	Cereblon~DDB1 in the Apo form with DDB1 in the hinged conformation 分子名称: DNA damage-binding protein 1, Protein cereblon, ZINC ION 著者 Watson, E.R, Lander, G.C. 登録日 2022-06-07 公開日 2022-07-20 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Molecular glue CELMoD compounds are regulators of cereblon conformation. Science, 378, 2022
8J91	Cryo-EM structure of nucleosome containing Arabidopsis thaliana histones 分子名称: DNA (169-MER), HTA13, Histone H2B.6, ... 著者 Osakabe, A, Takizawa, Y, Horikoshi, N, Hatazawa, S, Berger, F, Kurumizaka, H, Kakutani, T. 登録日 2023-05-02 公開日 2024-07-03 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Molecular and structural basis of the chromatin remodeling activity by Arabidopsis DDM1. Nat Commun, 15, 2024
6NEB	MYC Promoter G-Quadruplex with 1:6:1 loop length 分子名称: DNA (27-MER) 著者 Dickerhoff, J, Onel, B, Chen, L, Chen, Y, Yang, D. 登録日 2018-12-17 公開日 2019-02-13 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution Structure of a MYC Promoter G-Quadruplex with 1:6:1 Loop Length. Acs Omega, 4, 2019
7W9V	Cryo-EM structure of nucleosome in complex with p300 acetyltransferase catalytic core (complex I) 分子名称: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Hatazawa, S, Liu, J, Takizawa, Y, Zandian, M, Negishi, L, Kutateladze, T.G, Kurumizaka, H. 登録日 2021-12-10 公開日 2022-07-13 実験手法 ELECTRON MICROSCOPY (3.95 Å) 主引用文献 Structural basis for binding diversity of acetyltransferase p300 to the nucleosome. Iscience, 25, 2022
7DBH	The mouse nucleosome structure containing H3mm18 分子名称: DNA (126-MER), Histone H2A type 1-B, Histone H2B type 3-A, ... 著者 Hirai, S, Takizawa, Y, Kujirai, T, Kurumizaka, H. 登録日 2020-10-20 公開日 2022-01-19 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Unusual nucleosome formation and transcriptome influence by the histone H3mm18 variant. Nucleic Acids Res., 50, 2022
5Z80	Solution structure for the 1:1 complex of a platinum(II)-based tripod bound to a hybrid-1 human telomeric G-quadruplex 分子名称: 4-[1-(2,5,8-triazonia-1$l^4-platinabicyclo[3.3.0]octan-1-yl)pyridin-1-ium-4-yl]-N,N-bis[4-[1-(2,5,8-triazonia-1$l^4-platinabicyclo[3.3.0]octan-1-yl)pyridin-1-ium-4-yl]phenyl]aniline, G-quadruplex DNA (26-MER) 著者 Liu, W.T, Zhong, Y.F, Liu, L.Y, Zeng, W.J, Wang, F.Y, Yang, D.Z, Mao, Z.W. 登録日 2018-01-30 公開日 2018-09-19 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution structures of multiple G-quadruplex complexes induced by a platinum(II)-based tripod reveal dynamic binding Nat Commun, 9, 2018
2AU3	Crystal Structure of the Aquifex aeolicus primase (Zinc Binding and RNA Polymerase Domains) 分子名称: DNA primase, ZINC ION 著者 Corn, J.E, Pease, P.J, Hura, G.L, Berger, J.M. 登録日 2005-08-26 公開日 2005-11-15 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crosstalk between primase subunits can act to regulate primer synthesis in trans. Mol.Cell, 20, 2005
5HQ2	Structural model of Set8 histone H4 Lys20 methyltransferase bound to nucleosome core particle 分子名称: DNA (149-MER), Guanine nucleotide exchange factor SRM1, Histone H2A, ... 著者 Tavarekere, G, McGinty, R.K, Tan, S. 登録日 2016-01-21 公開日 2016-03-23 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (4.5 Å) 主引用文献 Multivalent Interactions by the Set8 Histone Methyltransferase With Its Nucleosome Substrate. J.Mol.Biol., 428, 2016
8HAZ	Crystal structure of Caenorhabditis elegans NMAD-1 in complex with ligand I 分子名称: DNA N6-methyl adenine demethylase, SULFATE ION 著者 Shang, G, Chen, Z. 登録日 2022-10-27 公開日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.66 Å) 主引用文献 Structural Basis of Nucleic Acid Recognition and 6mA Demethylation by Caenorhabditis elegans NMAD-1A. Int J Mol Sci, 25, 2024
1BWT	NMR SOLUTION STRUCTURE OF [D(GCGAATCGC)2] 分子名称: DNA (5'-D(*GP*CP*GP*AP*AP*TP*TP*CP*GP*C)-3') 著者 Aramini, J.M, Mujeeb, A, Germann, M.W. 登録日 1998-09-28 公開日 1999-01-06 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 NMR solution structures of [d(GCGAAT-3'-3'-alphaT-5'-5'-CGC)2] and its unmodified control. Nucleic Acids Res., 26, 1998
1BX5	NMR SOLUTION STRUCTURE OF [D(GCGAAT-3'-3'-ALPHAT-5'-5'-CGC)2] 分子名称: DNA (5'-D(*GP*CP*GP*AP*AP*TP*(ATD)P*CP*GP*C)-3') 著者 Aramini, J.M, Mujeeb, A, Germann, M.W. 登録日 1998-09-28 公開日 1999-01-06 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 NMR solution structures of [d(GCGAAT-3'-3'-alphaT-5'-5'-CGC)2] and its unmodified control. Nucleic Acids Res., 26, 1998
3AIZ	Crystal structure of PCNA2-PCNA3 complex from Sulfolobus tokodaii (P21212) 分子名称: DNA polymerase sliding clamp B, DNA polymerase sliding clamp C, SULFATE ION 著者 Kawai, A, Higuchi, S, Miyamoto, S. 登録日 2010-05-18 公開日 2011-05-18 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 A novel heterotetrameric structure of the crenarchaeal PCNA2-PCNA3 complex J.Struct.Biol., 174, 2011
3AIX	Crystal structure of PCNA2-PCNA3 complex from Sulfolobus tokodaii (I222) 分子名称: DNA polymerase sliding clamp B, DNA polymerase sliding clamp C, SULFATE ION 著者 Kawai, A, Higuchi, S, Miyamoto, S. 登録日 2010-05-18 公開日 2011-05-18 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 A novel heterotetrameric structure of the crenarchaeal PCNA2-PCNA3 complex J.Struct.Biol., 174, 2011
6VUG	Diabody bound to a Reverse Transcriptase Aptamer Complex 分子名称: DNA (38-MER), GLYCEROL, Heavy chain variable fragment, ... 著者 Chesterman, C, Arnold, E. 登録日 2020-02-15 公開日 2021-02-17 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Co-crystallization with diabodies: A case study for the introduction of synthetic symmetry. Structure, 29, 2021
1QN4	Crystal structure of the T(-24) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. 分子名称: DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*AP*TP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*AP*TP*TP*TP*TP*AP*TP*AP*GP*C)-3'), TRANSCRIPTION INITIATION FACTOR TFIID-1 著者 Patikoglou, G.A, Kim, J.L, Sun, L, Yang, S.-H, Kodadek, T, Burley, S.K. 登録日 1999-10-14 公開日 2000-02-06 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution Genes Dev., 13, 1999
5ZB9	Crystal structure of Rtt109 from Aspergillus fumigatus 分子名称: DNA damage response protein Rtt109, putative, GLYCEROL 著者 Zhang, L, Serra-Cardona, A, Zhou, H, Wang, M, Yang, N, Zhang, Z, Xu, R.M. 登録日 2018-02-10 公開日 2018-07-25 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.502 Å) 主引用文献 Multisite Substrate Recognition in Asf1-Dependent Acetylation of Histone H3 K56 by Rtt109. Cell, 174, 2018

<528529530531532533534535536537538539540541542543>