PDB: 46984 件ウェブページステータス検索Chemie searchBIRD

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1M8C	SOLUTION STRUCTURE OF THE T State OF TURKEY OVOMUCOID AT PH 2.5 分子名称: Ovomucoid 著者 Song, J, Laskowski Jr, M, Qasim, M.A, Markley, J.L. 登録日 2002-07-24 公開日 2002-09-04 最終更新日 2021-10-27 実験手法 SOLUTION NMR 主引用文献 Two conformational states of Turkey ovomucoid third domain at low pH: three-dimensional structures, internal dynamics, and interconversion kinetics and thermodynamics. Biochemistry, 42, 2003
6HRM	E. coli 70S d2d8 stapled ribosome 分子名称: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ... 著者 Schmied, W.H, Tnimov, Z, Uttamapinant, C, Rae, C.D, Fried, S.D, Chin, J.W. 登録日 2018-09-27 公開日 2018-12-19 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.96 Å) 主引用文献 Controlling orthogonal ribosome subunit interactions enables evolution of new function. Nature, 564, 2018
1O4X	TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT 分子名称: 5'-D(*CP*AP*TP*TP*AP*GP*CP*AP*TP*GP*AP*CP*AP*AP*AP*GP*AP*CP*A)-3', 5'-D(*TP*GP*TP*CP*TP*TP*TP*GP*TP*CP*AP*TP*GP*CP*TP*AP*AP*TP*G)-3', Transcription factor SOX-2, ... 著者 Clore, G.M, Williams, D.C. 登録日 2003-07-17 公開日 2004-01-27 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 Molecular basis for synergistic transcriptional activation by Oct1 and Sox2 revealed from the solution structure of the 42-kDa Oct1.Sox2.Hoxb1-DNA ternary transcription factor complex. J.Biol.Chem., 279, 2004
7X58	Cryo-EM structure of human subnucleosome (open form) 分子名称: Histone H3.1, Histone H4, Widom601 DNA FW (145-MER), ... 著者 Nozawa, K, Takizawa, Y, Kurumizaka, H. 登録日 2022-03-04 公開日 2022-11-16 最終更新日 2024-06-26 実験手法 ELECTRON MICROSCOPY (3.93 Å) 主引用文献 Cryo-electron microscopy structure of the H3-H4 octasome: A nucleosome-like particle without histones H2A and H2B. Proc.Natl.Acad.Sci.USA, 119, 2022
1NY6	Crystal structure of sigm54 activator (AAA+ ATPase) in the active state 分子名称: ADENOSINE-5'-DIPHOSPHATE, transcriptional regulator (NtrC family) 著者 Lee, S.Y, de la Torre, A, Kustu, S, Nixon, B.T, Wemmer, D.E. 登録日 2003-02-11 公開日 2003-11-11 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Regulation of the transcriptional activator NtrC1: structural studies of the regulatory and AAA+ ATPase domains Genes Dev., 17, 2003
6GXM	Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Graf, M, Huter, P, Maracci, C, Peterek, M, Rodnina, M.V, Wilson, D.N. 登録日 2018-06-27 公開日 2018-08-22 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Visualization of translation termination intermediates trapped by the Apidaecin 137 peptide during RF3-mediated recycling of RF1. Nat Commun, 9, 2018
6GZZ	T. thermophilus hibernating 100S ribosome (amc) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Flygaard, R.K, Jenner, L.B. 登録日 2018-07-05 公開日 2018-10-24 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.13 Å) 主引用文献 Cryo-EM structure of the hibernating Thermus thermophilus 100S ribosome reveals a protein-mediated dimerization mechanism. Nat Commun, 9, 2018
7X57	Cryo-EM structure of human subnucleosome (closed form) 分子名称: Histone H3.1, Histone H4, Widom601 DNA FW (145-MER), ... 著者 Nozawa, K, Takizawa, Y, Kurumizaka, H. 登録日 2022-03-04 公開日 2022-11-16 最終更新日 2024-06-26 実験手法 ELECTRON MICROSCOPY (3.63 Å) 主引用文献 Cryo-electron microscopy structure of the H3-H4 octasome: A nucleosome-like particle without histones H2A and H2B. Proc.Natl.Acad.Sci.USA, 119, 2022
4YZV	Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Schureck, M.A, Dunkle, J.A, Maehigashi, T, Dunham, C.M. 登録日 2015-03-25 公開日 2015-10-21 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Defining the mRNA recognition signature of a bacterial toxin protein. Proc.Natl.Acad.Sci.USA, 112, 2015
8ANY	Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA 分子名称: 1,4-DIAMINOBUTANE, 12S mitochondrial rRNA, 16S mitochondrial rRNA, ... 著者 Singh, V, Itoh, Y, Amunts, A. 登録日 2022-08-06 公開日 2023-08-16 最終更新日 2024-06-26 実験手法 ELECTRON MICROSCOPY (2.85 Å) 主引用文献 Structural basis of LRPPRC-SLIRP-dependent translation by the mitoribosome To Be Published
8B0A	Cryo-EM structure of ALC1 bound to an asymmetric, site-specifically PARylated nucleosome 分子名称: Chromodomain-helicase-DNA-binding protein 1-like, DNA (149-MER) Widom 601 sequence, Histone H2A type 1, ... 著者 Bacic, L, Gaullier, G, Deindl, S. 登録日 2022-09-07 公開日 2023-09-20 最終更新日 2024-04-03 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Asymmetric nucleosome PARylation at DNA breaks mediates directional nucleosome sliding by ALC1. Nat Commun, 15, 2024
6HUM	Structure of the photosynthetic complex I from Thermosynechococcus elongatus 分子名称: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, IRON/SULFUR CLUSTER, ... 著者 Schuller, J.M, Schuller, S.K, Kurisu, G, Engel, B.D, Nowaczyk, M.M. 登録日 2018-10-09 公開日 2019-01-09 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.34 Å) 主引用文献 Structural adaptations of photosynthetic complex I enable ferredoxin-dependent electron transfer. Science, 363, 2019
1N4P	Protein Geranylgeranyltransferase type-I Complexed with Geranylgeranyl Diphosphate 分子名称: CHLORIDE ION, Fusion protein consisting of transforming protein p21b and Ras related protein Rap-2b, GERAN-8-YL GERAN, ... 著者 Taylor, J.S, Reid, T.S, Casey, P.J, Beese, L.S. 登録日 2002-11-01 公開日 2003-11-18 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Structure of mammalian protein geranylgeranyltransferase type-I EMBO J., 22, 2003
7WZN	PSI-LHCI from Chlamydomonas reinhardtii with bound ferredoxin 分子名称: CHLOROPHYLL A, CHLOROPHYLL A ISOMER, CHLOROPHYLL B, ... 著者 Kurisu, G, Gerle, C, Mitsuoka, K, Kawamoto, A, Tanaka, H. 登録日 2022-02-18 公開日 2023-02-22 最終更新日 2024-06-26 実験手法 ELECTRON MICROSCOPY (4.9 Å) 主引用文献 Three structures of PSI-LHCI from Chlamydomonas reinhardtii suggest a resting state re-activated by ferredoxin. Biochim Biophys Acta Bioenerg, 1864, 2023
1N4Q	Protein Geranylgeranyltransferase type-I Complexed with a GGPP Analog and a KKKSKTKCVIL Peptide 分子名称: 2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE, CHLORIDE ION, Fusion protein consisting of transforming protein p21b and Ras related protein Rap-2b, ... 著者 Taylor, J.S, Reid, T.S, Casey, P.J, Beese, L.S. 登録日 2002-11-01 公開日 2003-11-18 最終更新日 2017-06-28 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structure of mammalian protein geranylgeranyltransferase type-I EMBO J., 22, 2003
7X2Q	Salvia miltiorrhiza CYP76AH3 分子名称: PROTOPORPHYRIN IX CONTAINING FE, Sugiol synthase 著者 Chang, Z. 登録日 2022-02-26 公開日 2023-03-01 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (3.68 Å) 主引用文献 Structure of CYP76AH3 at 3.67 Angstroms resolution To Be Published
8B7U	Bacterial chalcone isomerase H33A with taxifolin 分子名称: (2R,3R)-2-(3,4-DIHYDROXYPHENYL)-3,5,7-TRIHYDROXY-2,3-DIHYDRO-4H-CHROMEN-4-ONE, CHLORIDE ION, Chalcone isomerase, ... 著者 Hinrichs, W, Palm, G.J. 登録日 2022-10-03 公開日 2022-11-23 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural Basis for (2 R ,3 R )-Taxifolin Binding and Reaction Products to the Bacterial Chalcone Isomerase of Eubacterium ramulus . Molecules, 27, 2022
6Q6H	Cryo-EM structure of the APC/C-Cdc20-Cdk2-cyclinA2-Cks2 complex, the D2 box class 分子名称: Anaphase-promoting complex subunit 10, Anaphase-promoting complex subunit 11, Anaphase-promoting complex subunit 13, ... 著者 Zhang, S, Barford, D. 登録日 2018-12-11 公開日 2019-09-11 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Cyclin A2 degradation during the spindle assembly checkpoint requires multiple binding modes to the APC/C. Nat Commun, 10, 2019
6Q97	Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Rae, C.D. 登録日 2018-12-17 公開日 2019-03-13 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 How a circularized tmRNA moves through the ribosome. Science, 363, 2019
7XNP	Structure of nucleosome-AAG complex (A-55I, post-catalytic state) 分子名称: DNA (152-MER), Histone H2A type 1, Histone H2B 1.1, ... 著者 Zheng, L, Tsai, B, Gao, N. 登録日 2022-04-29 公開日 2023-05-03 最終更新日 2023-11-08 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structural and mechanistic insights into the DNA glycosylase AAG-mediated base excision in nucleosome. Cell Discov, 9, 2023
3GIY	Crystal Structures of the G81A Mutant of the Active Chimera of (S)-Mandelate Dehydrogenase and its Complex with Two of its Substrates 分子名称: (S)-mandelate dehydrogenase, Peroxisomal (S)-2-hydroxy-acid oxidase, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ... 著者 Sukumar, N, Dewanti, A, Merli, A, Rossi, G.L, Mitra, B, Mathews, F.S. 登録日 2009-03-06 公開日 2009-12-22 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structures of the G81A mutant form of the active chimera of (S)-mandelate dehydrogenase and its complex with two of its substrates. Acta Crystallogr.,Sect.D, 65, 2009
6QW6	Structure of the human U5.U4/U6 tri-snRNP at 2.9A resolution. 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, GUANOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, ... 著者 Charenton, C, Wilkinson, M.E, Nagai, K. 登録日 2019-03-05 公開日 2019-04-17 最終更新日 2020-10-07 実験手法 ELECTRON MICROSCOPY (2.92 Å) 主引用文献 Mechanism of 5' splice site transfer for human spliceosome activation. Science, 364, 2019
7XFJ	Structure of nucleosome-AAG complex (T-50I, post-catalytic state) 分子名称: DNA (152-MER), DNA-3-methyladenine glycosylase, Histone H2A type 1, ... 著者 Zheng, L, Tsai, B, Gao, N. 登録日 2022-04-01 公開日 2023-11-08 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural and mechanistic insights into the DNA glycosylase AAG-mediated base excision in nucleosome. Cell Discov, 9, 2023
6H4N	Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S1, ... 著者 Beckert, B, Turk, M, Czech, A, Berninghausen, O, Beckmann, R, Ignatova, Z, Plitzko, J, Wilson, N.D. 登録日 2018-07-22 公開日 2018-09-05 最終更新日 2018-10-24 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1. Nat Microbiol, 3, 2018
3JB9	Cryo-EM structure of the yeast spliceosome at 3.6 angstrom resolution 分子名称: ADENOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... 著者 Yan, C, Hang, J, Wan, R, Huang, M, Wong, C, Shi, Y. 登録日 2015-08-09 公開日 2015-09-23 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structure of a yeast spliceosome at 3.6-angstrom resolution Science, 349, 2015

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