PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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7LCC	Helitron transposase bound to LTS 分子名称: Helraiser K1068Q, LTS, ZINC ION 著者 Kosek, D, Dyda, F. 登録日 2021-01-10 公開日 2021-08-25 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.66 Å) 主引用文献 The large bat Helitron DNA transposase forms a compact monomeric assembly that buries and protects its covalently bound 5'-transposon end. Mol.Cell, 81, 2021
3FCF	Complex of UNG2 and a fragment-based designed inhibitor 分子名称: 3-[(1E,7E)-8-(2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)-3,6-dioxa-2,7-diazaocta-1,7-dien-1-yl]benzoic acid, THIOCYANATE ION, Uracil-DNA glycosylase 著者 Bianchet, M.A, Chung, S, Parker, J.B, Amzel, L.M, Stivers, J.T. 登録日 2008-11-21 公開日 2009-04-28 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.84 Å) 主引用文献 Impact of linker strain and flexibility in the design of a fragment-based inhibitor Nat.Chem.Biol., 5, 2009
8GJA	RAD51C-XRCC3 structure 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, RAD51C, ... 著者 Arvai, A.S, Tainer, J.A, Williams, G, Longo, M.A. 登録日 2023-03-15 公開日 2023-08-16 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 RAD51C-XRCC3 structure and cancer patient mutations define DNA replication roles. Nat Commun, 14, 2023
8GJ8	RAD51C C-terminal domain 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, RAD51C 著者 Arvai, A.S, Tainer, J.A, Williams, G. 登録日 2023-03-15 公開日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 RAD51C-XRCC3 structure and cancer patient mutations define DNA replication roles. Nat Commun, 14, 2023
1G9Y	HOMING ENDONUCLEASE I-CREI / DNA SUBSTRATE COMPLEX WITH CALCIUM 分子名称: 5'-D(*CP*GP*AP*AP*AP*CP*TP*GP*TP*CP*TP*CP*AP*CP*GP*AP*CP*GP*TP*TP*TP*TP*GP*C)-3', 5'-D(*GP*CP*AP*AP*AP*AP*CP*GP*TP*CP*GP*TP*GP*AP*GP*AP*CP*AP*GP*TP*TP*TP*CP*G)-3', CALCIUM ION, ... 著者 Chevalier, B, Monnat, R.J, Stoddard, B.L. 登録日 2000-11-28 公開日 2001-04-02 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 The homing endonuclease I-CreI uses three metals, one of which is shared between the two active sites. Nat.Struct.Biol., 8, 2001
8KA4	Arabidopsis AP endonuclease ARP complex with 21bp THF-containing DNA 分子名称: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic, ... 著者 Guo, W.T, Wu, B.X. 登録日 2023-08-02 公開日 2024-02-21 最終更新日 2024-06-19 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural insights into the catalytic mechanism of the AP endonuclease AtARP. Structure, 32, 2024
5T3L	B-DNA (CGCGAATTCGCG)2 soaked with selenourea for 1 min 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), selenourea 著者 Luo, Z, Dauter, Z. 登録日 2016-08-25 公開日 2016-11-30 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 Selenourea: a convenient phasing vehicle for macromolecular X-ray crystal structures. Sci Rep, 6, 2016
3FCL	Complex of UNG2 and a fragment-based designed inhibitor 分子名称: 3-{[(4-{[(2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)methyl]amino}butyl)amino]methyl}benzoic acid, THIOCYANATE ION, Uracil-DNA glycosylase 著者 Bianchet, M.A, Chung, S, Parker, J.B, Amzel, L.M, Stivers, J.T. 登録日 2008-11-21 公開日 2009-04-28 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Impact of linker strain and flexibility in the design of a fragment-based inhibitor Nat.Chem.Biol., 5, 2009
1G9Z	LAGLIDADG HOMING ENDONUCLEASE I-CREI / DNA PRODUCT COMPLEX WITH MAGNESIUM 分子名称: 5'-D(*CP*GP*AP*AP*AP*CP*TP*GP*TP*CP*TP*CP*AP*C)-3', 5'-D(*GP*CP*AP*AP*AP*AP*CP*GP*TP*CP*GP*TP*GP*A)-3', 5'-D(P*GP*AP*CP*AP*GP*TP*TP*TP*CP*G)-3', ... 著者 Chevalier, B, Monnat, R.J, Stoddard, B.L. 登録日 2000-11-28 公開日 2001-04-02 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 The homing endonuclease I-CreI uses three metals, one of which is shared between the two active sites. Nat.Struct.Biol., 8, 2001
3MIP	I-MsoI re-designed for altered DNA cleavage specificity (-8GCG) 分子名称: CALCIUM ION, DNA (5'-D(*CP*GP*GP*AP*GP*CP*GP*GP*TP*CP*TP*CP*AP*CP*GP*AP*CP*CP*GP*CP*CP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*GP*GP*CP*GP*GP*TP*CP*GP*TP*GP*AP*GP*AP*CP*CP*GP*CP*TP*CP*CP*G)-3'), ... 著者 Taylor, G.K, Stoddard, B.L. 登録日 2010-04-11 公開日 2010-05-19 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Computational reprogramming of homing endonuclease specificity at multiple adjacent base pairs. Nucleic Acids Res., 38, 2010
1QSL	KLENOW FRAGMENT COMPLEXED WITH SINGLE-STRANDED SUBSTRATE AND EUROPIUM (III) ION 分子名称: 5'-D(*GP*CP*TP*TP*AP*CP*GP*C)-3', DNA POLYMERASE I, EUROPIUM ION 著者 Brautigam, C.A, Aschheim, K, Steitz, T.A. 登録日 1999-06-22 公開日 1999-06-30 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural elucidation of the binding and inhibitory properties of lanthanide (III) ions at the 3'-5' exonucleolytic active site of the Klenow fragment Chem.Biol., 6, 1999
2HC7	2'-selenium-T A-DNA [G(TSe)GTACAC] 分子名称: 5'-D(*GP*(2ST)P*GP*TP*AP*CP*AP*C)-3' 著者 Jiang, J, Sheng, J, Huang, Z. 登録日 2006-06-15 公開日 2006-07-04 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Crystal Structure of 2'-Selenium modified T A-DNA G(TSe)GTACAC TO BE PUBLISHED
1ZZF	The DNA-bound solution structure of HPV-16 E2 DNA-binding domain 分子名称: Regulatory protein E2 著者 Eliseo, T, Nadra, A.D, De Prat-Gay, G, Paci, M, Cicero, O.D. 登録日 2005-06-14 公開日 2006-03-14 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 The DNA-bound solution structure of HPV-16 E2 DNA-binding domain to be published
2PI2	Full-length Replication protein A subunits RPA14 and RPA32 分子名称: 1,4-DIETHYLENE DIOXIDE, Replication protein A 14 kDa subunit, Replication protein A 32 kDa subunit 著者 Deng, X, Borgstahl, G.E. 登録日 2007-04-12 公開日 2007-10-16 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure of the Full-length Human RPA14/32 Complex Gives Insights into the Mechanism of DNA Binding and Complex Formation. J.Mol.Biol., 374, 2007
2H7F	Structure of variola topoisomerase covalently bound to DNA 分子名称: 5'-D(*TP*AP*AP*TP*AP*AP*GP*GP*GP*CP*GP*AP*CP*A)-3', 5'-D(*TP*TP*GP*TP*CP*GP*CP*CP*CP*TP*T)-3', DNA topoisomerase 1 著者 Perry, K, Hwang, Y, Bushman, F.D, Van Duyne, G.D. 登録日 2006-06-02 公開日 2006-08-15 最終更新日 2021-10-20 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural basis for specificity in the poxvirus topoisomerase. Mol.Cell, 23, 2006
3OIY	Helicase domain of reverse gyrase from Thermotoga maritima 分子名称: CHLORIDE ION, PYROPHOSPHATE 2-, reverse gyrase helicase domain 著者 Rudolph, M.G, Klostermeier, D. 登録日 2010-08-20 公開日 2010-12-01 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 The latch modulates nucleotide and DNA binding to the helicase-like domain of Thermotoga maritima reverse gyrase and is required for positive DNA supercoiling. Nucleic Acids Res., 39, 2011
1W3S	The crystal structure of RecO from Deinococcus radiodurans. 分子名称: HYPOTHETICAL PROTEIN DR0819, ZINC ION 著者 Leiros, I, Timmins, J, Hall, D.R, Leonard, G.A, McSweeney, S.M. 登録日 2004-07-18 公開日 2005-02-23 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal Structure and DNA-Binding Analysis of Reco from Deinococcus Radiodurans Embo J., 24, 2005
1IYJ	STRUCTURE OF A BRCA2-DSS1 COMPLEX 分子名称: Deleted in split hand/split foot protein 1, breast cancer susceptibility 著者 Pavletich, N.P, Jeffrey, P.D, Yang, H.J. 登録日 2002-08-28 公開日 2002-10-02 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 BRCA2 function in DNA binding and recombination from a BRCA2-DSS1-ssDNA structure. Science, 297, 2002
8TDW	ssRNA bound SAMHD1 T open 分子名称: Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, FE (III) ION, RNA (5'-R(P*CP*CP*GP*AP*CP*C)-3'), ... 著者 Sung, M, Huynh, K, Han, S. 登録日 2023-07-05 公開日 2023-11-22 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (3.04 Å) 主引用文献 Guanine-containing ssDNA and RNA induce dimeric and tetrameric structural forms of SAMHD1. Nucleic Acids Res., 51, 2023
8TDV	ssRNA bound SAMHD1 T closed 分子名称: Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, FE (III) ION, RNA (5'-R(P*CP*CP*GP*AP*CP*CP*C)-3'), ... 著者 Sung, M, Huynh, K, Han, S. 登録日 2023-07-05 公開日 2023-12-20 実験手法 ELECTRON MICROSCOPY (3.44 Å) 主引用文献 Guanine-containing ssDNA and RNA induce dimeric and tetrameric structural forms of SAMHD1. Nucleic Acids Res., 51, 2023
2Z6K	Crystal structure of full-length human RPA14/32 heterodimer 分子名称: Replication protein A 14 kDa subunit, Replication protein A 32 kDa subunit 著者 Deng, X, Habel, J.E, Kabaleeswaran, V, Borgstahl, G.E. 登録日 2007-08-03 公開日 2007-12-04 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structure of the Full-length Human RPA14/32 Complex Gives Insights into the Mechanism of DNA Binding and Complex Formation J.Mol.Biol., 374, 2007
6OZE	Crystal structure of the catalytic domain of human Endonuclease V (C140S/C225S/C226A/C228S) 分子名称: ACETATE ION, Endonuclease V, GLYCEROL, ... 著者 Samara, N.L, Yang, W. 登録日 2019-05-15 公開日 2019-09-04 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Evolution of Inosine-Specific Endonuclease V from Bacterial DNase to Eukaryotic RNase. Mol.Cell, 76, 2019
7KRW	Stimulating state of near full-length Hsp70 DnaK fused with a substrate peptide 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Chaperone protein DnaK fused with substrate peptide 著者 Wang, W, Hendrickson, W.A. 登録日 2020-11-20 公開日 2021-09-15 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (7.7 Å) 主引用文献 Conformational equilibria in allosteric control of Hsp70 chaperones. Mol.Cell, 81, 2021
7KO2	Restraining state of near full-length Hsp70 DnaK 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Chaperone protein DnaK, MAGNESIUM ION, ... 著者 Wang, W, Hendrickson, W.A. 登録日 2020-11-06 公開日 2021-09-15 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.64 Å) 主引用文献 Conformational equilibria in allosteric control of Hsp70 chaperones. Mol.Cell, 81, 2021
7KRT	Restraining state of a truncated Hsp70 DnaK 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Chaperone protein DnaK, MAGNESIUM ION 著者 Wang, W, Hendrickson, W.A. 登録日 2020-11-20 公開日 2021-09-15 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.79 Å) 主引用文献 Conformational equilibria in allosteric control of Hsp70 chaperones. Mol.Cell, 81, 2021

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