PDB: 45176 件ウェブページステータス検索Chemie searchBIRD

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8D28	Crystal structure of theophylline aptamer in complex with theophylline 分子名称: MAGNESIUM ION, RNA (33-MER), SODIUM ION, ... 著者 Menichelli, E, Spraggon, G. 登録日 2022-05-28 公開日 2022-11-30 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.42 Å) 主引用文献 Discovery of small molecules that target a tertiary-structured RNA. Proc.Natl.Acad.Sci.USA, 119, 2022
8D2A	Crystal structure of theophylline aptamer in complex with TAL3 分子名称: 6-methoxy-7-[(1-methylpiperidin-4-yl)methoxy]quinazolin-4-ol, MAGNESIUM ION, RNA (33-MER), ... 著者 Menichelli, E, Spraggon, G. 登録日 2022-05-28 公開日 2022-11-30 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.17 Å) 主引用文献 Discovery of small molecules that target a tertiary-structured RNA. Proc.Natl.Acad.Sci.USA, 119, 2022
8D5L	Crystal structure of theophylline aptamer in complex with TAL1 分子名称: 4-amino-8-methylpteridine-2,7(1H,8H)-dione, CALCIUM ION, MAGNESIUM ION, ... 著者 Menichelli, E, Spraggon, G. 登録日 2022-06-05 公開日 2022-11-30 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.64 Å) 主引用文献 Discovery of small molecules that target a tertiary-structured RNA. Proc.Natl.Acad.Sci.USA, 119, 2022
8D29	Crystal structure of theophylline aptamer - apo form 分子名称: Fab heavy chain, Fab light chain, POTASSIUM ION, ... 著者 Menichelli, E, Spraggon, G. 登録日 2022-05-28 公開日 2022-11-30 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.81 Å) 主引用文献 Discovery of small molecules that target a tertiary-structured RNA. Proc.Natl.Acad.Sci.USA, 119, 2022
2BII	crystal structure of nitrate-reducing fragment of assimilatory nitrate reductase from Pichia angusta 分子名称: (MOLYBDOPTERIN-S,S)-DIOXO-THIO-MOLYBDENUM(IV), GLYCEROL, NITRATE REDUCTASE [NADPH], ... 著者 Fischer, K, Barbier, G, Hecht, H.-J, Mendel, R.R, Campbell, W.H, Schwarz, G. 登録日 2005-01-21 公開日 2005-03-30 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Structural Basis of Eukaryotic Nitrate Reduction: Crystal Structures of the Nitrate Reductase Active Site Plant Cell, 17, 2005
8D38	Structure of a purine nucleoside phosphorylase from Geobacillus stearothermophilus 分子名称: Purine nucleoside phosphorylase, SODIUM ION 著者 Given, F, Johnston, J, Crittenden, D, Moran, F, Johns, A. 登録日 2022-05-31 公開日 2022-12-14 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.72 Å) 主引用文献 The structure of His-tagged Geobacillus stearothermophilus purine nucleoside phosphorylase reveals a 'spanner in the works'. Acta Crystallogr.,Sect.F, 78, 2022
5JDU	Crystal structure for human thrombin mutant D189A 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, GLYCEROL, ... 著者 Pozzi, N, Chen, Z, Di Cera, E. 登録日 2016-04-17 公開日 2016-07-13 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Loop Electrostatics Asymmetry Modulates the Preexisting Conformational Equilibrium in Thrombin. Biochemistry, 55, 2016
2DHO	Crystal structure of human IPP isomerase I in space group P212121 分子名称: CHLORIDE ION, Isopentenyl-diphosphate delta-isomerase 1, MANGANESE (II) ION, ... 著者 Zhang, C, Wei, Z, Gong, W. 登録日 2006-03-24 公開日 2007-06-05 最終更新日 2021-11-10 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Crystal structures of human IPP isomerase: new insights into the catalytic mechanism J.Mol.Biol., 366, 2007
8D4O	Crystal Structure of the Neutrophil Serine Protease Inhibitor Eap1 from S. aureus 分子名称: Extracellular Adherence Protein, SODIUM ION 著者 Gido, C.D, Geisbrecht, B.V. 登録日 2022-06-02 公開日 2022-12-21 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Characterization of two distinct neutrophil serine protease-binding modes within a Staphylococcus aureus innate immune evasion protein family. J.Biol.Chem., 299, 2023
8DJF	Crystal structure of RPA3624, a beta-propeller lactonase from Rhodopseudomonas palustris, with active-site bound tetrahedral intermediate 分子名称: (5S)-5-methyloxolane-2,2-diol, CALCIUM ION, Gluconolactonase, ... 著者 Bingman, C.A, Hall, B.W, Smith, R.W, Fox, B.G, Donohue, T.J. 登録日 2022-06-30 公開日 2023-01-11 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 A broad specificity beta-propeller enzyme from Rhodopseudomonas palustris that hydrolyzes many lactones including gamma-valerolactone. J.Biol.Chem., 299, 2022
8DJZ	Crystal structure of RPA3624, a beta-propeller lactonase from Rhodopseudomonas palustris, with active-site bound product 分子名称: (4R)-4-hydroxypentanoic acid, CALCIUM ION, Gluconolactonase, ... 著者 Bingman, C.A, Hall, B.W, Smith, R.W, Fox, B.G, Donohue, T.J. 登録日 2022-07-01 公開日 2023-01-11 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 A broad specificity beta-propeller enzyme from Rhodopseudomonas palustris that hydrolyzes many lactones including gamma-valerolactone. J.Biol.Chem., 299, 2022
8DJR	Cytosolic ascorbate peroxidase from Sorghum bicolor 分子名称: L-ascorbate peroxidase, PROTOPORPHYRIN IX CONTAINING FE, SODIUM ION, ... 著者 Zhang, B, Kang, C. 登録日 2022-07-01 公開日 2023-01-18 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.46 Å) 主引用文献 A sorghum ascorbate peroxidase with four binding sites has activity against ascorbate and phenylpropanoids. Plant Physiol., 192, 2023
8DJX	Cytosolic ascorbate peroxidase from Sorghum bicolor - Compound II 分子名称: L-ascorbate peroxidase, PROTOPORPHYRIN IX CONTAINING FE, SODIUM ION, ... 著者 Zhang, B, Kang, C. 登録日 2022-07-01 公開日 2023-01-18 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.34 Å) 主引用文献 A sorghum ascorbate peroxidase with four binding sites has activity against ascorbate and phenylpropanoids. Plant Physiol., 192, 2023
6VFR	Crystal structure of human protocadherin 18 EC1-EC4 分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Harrison, O.J, Brasch, J, Shapiro, L. 登録日 2020-01-06 公開日 2020-03-11 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.79 Å) 主引用文献 Family-wide Structural and Biophysical Analysis of Binding Interactions among Non-clustered delta-Protocadherins. Cell Rep, 30, 2020
8DJU	Cytosolic ascorbate peroxidase from Sorghum bicolor - bicyclic dehydroascorbic acid complex 分子名称: (3aS,6S,6aR)-3,3,3a,6-tetrahydroxytetrahydrofuro[3,2-b]furan-2(3H)-one (non-preferred name), L-ascorbate peroxidase, PROTOPORPHYRIN IX CONTAINING FE, ... 著者 Zhang, B, Kang, C. 登録日 2022-07-01 公開日 2023-01-18 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 A sorghum ascorbate peroxidase with four binding sites has activity against ascorbate and phenylpropanoids. Plant Physiol., 192, 2023
8DJS	Cytosolic ascorbate peroxidase from Sorghum bicolor - one ascorbate complex 分子名称: ASCORBIC ACID, GLYCEROL, L-ascorbate peroxidase, ... 著者 Zhang, B, Kang, C. 登録日 2022-07-01 公開日 2023-01-18 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.19 Å) 主引用文献 A sorghum ascorbate peroxidase with four binding sites has activity against ascorbate and phenylpropanoids. Plant Physiol., 192, 2023
8DJT	Cytosolic ascorbate peroxidase from Sorghum bicolor - four ascorbates complex 分子名称: ASCORBIC ACID, GLYCEROL, L-ascorbate peroxidase, ... 著者 Zhang, B, Kang, C. 登録日 2022-07-01 公開日 2023-01-18 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.16 Å) 主引用文献 A sorghum ascorbate peroxidase with four binding sites has activity against ascorbate and phenylpropanoids. Plant Physiol., 192, 2023
8CX9	Structure of the SARS-COV2 PLpro (C111S) in complex with a dimeric Ubv that inhibits activity by an unusual allosteric mechanism 分子名称: BROMIDE ION, CHLORIDE ION, Papain-like protease nsp3, ... 著者 Singer, A.U, Slater, C.L, Patel, A, Russel, R, Mark, B.L, Sidhu, S.S. 登録日 2022-05-20 公開日 2023-01-25 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Ubiquitin variants potently inhibit SARS-CoV-2 PLpro and viral replication via a novel site distal to the protease active site. Plos Pathog., 18, 2022
8DJW	Cytosolic ascorbate peroxidase from Sorghum bicolor - hydroperoxo complex 分子名称: L-ascorbate peroxidase, OXYGEN MOLECULE, PROTOPORPHYRIN IX CONTAINING FE, ... 著者 Zhang, B, Kang, C. 登録日 2022-07-01 公開日 2023-01-18 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 A sorghum ascorbate peroxidase with four binding sites has activity against ascorbate and phenylpropanoids. Plant Physiol., 192, 2023
6V7Z	Human CD1d presenting alpha-Galactosylceramide in complex with VHH nanobody 1D22 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Antigen-presenting glycoprotein CD1d, ... 著者 Shahine, A, Rossjohn, J. 登録日 2019-12-10 公開日 2020-09-16 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 A single-domain bispecific antibody targeting CD1d and the NKT T-cell receptor induces a potent antitumor response. Nat Cancer, 2020
5IUY	Structural insights of the outer-membrane channel OprN 分子名称: CHLORIDE ION, FORMIC ACID, Multidrug efflux outer membrane protein OprN, ... 著者 Ntsogo, Y, Garnier, C, Phan, G, Monlezun, L, Benas, P, Broutin, I. 登録日 2016-03-18 公開日 2016-07-06 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.29 Å) 主引用文献 Xenon for tunnelling analysis of the efflux pump component OprN. PLoS ONE, 12, 2017
6V04	DynU16 crystal structure, a putative protein in the dynemicin biosynthetic locus 分子名称: CHLORIDE ION, MAGNESIUM ION, SODIUM ION, ... 著者 Alvarado, S.K, Miller, M.D, Bhardwaj, M, Thorson, J.S, Van Lanen, S.G, Phillips Jr, G.N. 登録日 2019-11-18 公開日 2020-11-18 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structural characterization of DynU16, a START/Bet v1-like protein involved in dynemicin biosynthesis. Acta Crystallogr.,Sect.F, 77, 2021
8D35	Crystal structure of SARS-CoV-2 main protease (Mpro) C145A mutant in complex with peptide from human tRNA methyltransferase TRMT1 分子名称: 3C-like proteinase nsp5, CHLORIDE ION, GLYCEROL, ... 著者 D'Oliviera, A, Mugridge, J.S. 登録日 2022-05-31 公開日 2023-03-01 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Recognition and Cleavage of Human tRNA Methyltransferase TRMT1 by the SARS-CoV-2 Main Protease. Elife, 2023
5Y07	Crystal structure of adenine phosphoribosyltransferase from Yersinia pseudotuberculosis with PRPP. 分子名称: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, Adenine phosphoribosyltransferase, MAGNESIUM ION, ... 著者 Pavithra, G.C, Ramagopal, U.A. 登録日 2017-07-25 公開日 2018-08-01 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.07 Å) 主引用文献 Crystal structure of adenine phosphoribosyltransferase from Yersinia pseudotuberculosis with PRPP To be published
8DCM	Crystal structure of Clostridioides difficile binary toxin proCDTb lacking D4 in complex with BINTOXB/22 Fab 分子名称: ADP-ribosylating binary toxin binding subunit CdtB, BINTOXB/22 Fab heavy chain, BINTOXB/22 Fab light chain, ... 著者 Goldsmith, J.A, McLellan, J.S. 登録日 2022-06-16 公開日 2023-04-05 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structural Basis for Binding of Neutralizing Antibodies to Clostridioides difficile Binary Toxin. J.Bacteriol., 205, 2023

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