Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8DJ0
DownloadVisualize
BU of 8dj0 by Molmil
Crystal structure of NavAb L123T as a basis for the human Nav1.7 Inherited Erythromelalgia I848T mutation
分子名称: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, Ion transport protein
著者Wisedchaisri, G, Gamal El-Din, T.M, Zheng, N, Catterall, W.A.
登録日2022-06-29
公開日2023-04-12
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural basis for severe pain caused by mutations in the S4-S5 linkers of voltage-gated sodium channel Na V 1.7.
Proc.Natl.Acad.Sci.USA, 120, 2023
9D53
DownloadVisualize
BU of 9d53 by Molmil
PAK4 in complex with compound 7
分子名称: N~2~-{[(1s,4s)-4-aminocyclohexyl]methyl}-N~4~-(5-cyclopropyl-1,3-thiazol-2-yl)pyrimidine-2,4-diamine, Serine/threonine-protein kinase PAK 4
著者Boone, C.D, Olland, A.M, Suto, R.K.
登録日2024-08-13
公開日2025-04-02
最終更新日2025-07-16
実験手法X-RAY DIFFRACTION (2.468 Å)
主引用文献Identification of a p21-activated kinase 1 (PAK1) inhibitor with 10-fold selectivity against PAK2.
Bioorg.Med.Chem.Lett., 127, 2025
4XIS
DownloadVisualize
BU of 4xis by Molmil
A METAL-MEDIATED HYDRIDE SHIFT MECHANISM FOR XYLOSE ISOMERASE BASED ON THE 1.6 ANGSTROMS STREPTOMYCES RUBIGINOSUS STRUCTURES WITH XYLITOL AND D-XYLOSE
分子名称: D-xylose, MANGANESE (II) ION, XYLOSE ISOMERASE, ...
著者Whitlow, M, Howard, A.J.
登録日1991-03-25
公開日1992-07-15
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献A metal-mediated hydride shift mechanism for xylose isomerase based on the 1.6 A Streptomyces rubiginosus structures with xylitol and D-xylose.
Proteins, 9, 1991
6QVO
DownloadVisualize
BU of 6qvo by Molmil
Crystal structure of human MTH1 in complex with N6-methyl-dAMP
分子名称: 7,8-dihydro-8-oxoguanine triphosphatase, GLYCEROL, N6-METHYL-DEOXY-ADENOSINE-5'-MONOPHOSPHATE, ...
著者Scaletti, E, Vallin, K.S, Brautigam, L, Sarno, A, Warpman Berglund, U, Helleday, T, Stenmark, P, Jemth, A.S.
登録日2019-03-04
公開日2020-03-18
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献MutT homologue 1 (MTH1) removes N6-methyl-dATP from the dNTP pool.
J.Biol.Chem., 295, 2020
8Z6H
DownloadVisualize
BU of 8z6h by Molmil
Structure of Polycystin-1/Polycystin-2 complex with Phosphatidylglycerol-bound
分子名称: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, 2-acetamido-2-deoxy-beta-D-glucopyranose, Polycystin-1, ...
著者Chen, M.Y, Su, Q, Shi, Y.G.
登録日2024-04-19
公開日2025-04-23
最終更新日2025-07-23
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structure of Polycystin-1/Polycystin-2 complex with Phosphatidylglycerol-bound
To Be Published
6YKK
DownloadVisualize
BU of 6ykk by Molmil
Neisseria gonorrhoeae Leucyl-tRNA Synthetase in Complex with Compound 15
分子名称: 1,2-ETHANEDIOL, Leucine--tRNA ligase, MAGNESIUM ION, ...
著者Pang, L, Strelkov, S.V, Weeks, S.D.
登録日2020-04-06
公開日2020-12-02
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.236 Å)
主引用文献Synthesis and structure-activity studies of novel anhydrohexitol-based Leucyl-tRNA synthetase inhibitors.
Eur.J.Med.Chem., 211, 2021
6WSJ
DownloadVisualize
BU of 6wsj by Molmil
Crystal Structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with cyclopeptide des4.3.1
分子名称: 1,2-ETHANEDIOL, Hdac6 protein, POTASSIUM ION, ...
著者Watson, P.R, Christianson, D.W.
登録日2020-05-01
公開日2021-04-28
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Anchor extension: a structure-guided approach to design cyclic peptides targeting enzyme active sites.
Nat Commun, 12, 2021
6RB1
DownloadVisualize
BU of 6rb1 by Molmil
Human protein kinase CK2 alpha in complex with 2-cyano-2-propenamide compound 1
分子名称: (~{E})-2-cyano-3-(3-methoxy-4-oxidanyl-phenyl)-~{N}-[5-(trifluoromethyl)-1,3,4-thiadiazol-2-yl]prop-2-enamide, 1,2-ETHANEDIOL, Casein kinase II subunit alpha, ...
著者Battistutta, R, Lolli, G.
登録日2019-04-08
公開日2020-04-08
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献A novel class of selective CK2 inhibitors targeting its open hinge conformation.
Eur.J.Med.Chem., 195, 2020
4XQC
DownloadVisualize
BU of 4xqc by Molmil
Crystal Structure of the Homospermidine Synthase (HSS) from Blastochloris viridis in Complex with NAD and 1,3-diaminopropane.
分子名称: 1,3-DIAMINOPROPANE, 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, ACETATE ION, ...
著者Krossa, S.
登録日2015-01-19
公開日2016-01-27
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.27 Å)
主引用文献Comprehensive Structural Characterization of the Bacterial Homospermidine Synthase-an Essential Enzyme of the Polyamine Metabolism.
Sci Rep, 6, 2016
8D51
DownloadVisualize
BU of 8d51 by Molmil
Parathyroid hormone 1 receptor extracellular domain complexed with a peptide ligand containing beta-3-homotryptophan
分子名称: 1,2-ETHANEDIOL, PTHrP[1-36], Parathyroid hormone/parathyroid hormone-related peptide receptor, ...
著者Yu, Z, Kreitler, D.F, Gellman, S.H.
登録日2022-06-03
公開日2023-06-14
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Harnessing Aromatic-Histidine Interactions through Synergistic Backbone Extension and Side Chain Modification.
Angew.Chem.Int.Ed.Engl., 62, 2023
8G92
DownloadVisualize
BU of 8g92 by Molmil
Structure of inhibitor 16d-bound SPNS2
分子名称: 3-[3-(4-decylphenyl)-1,2,4-oxadiazol-5-yl]propan-1-amine, Sphingosine-1-phosphate transporter SPNS2
著者Chen, H, Li, X.
登録日2023-02-21
公開日2023-05-24
最終更新日2023-12-13
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Structural and functional insights into Spns2-mediated transport of sphingosine-1-phosphate.
Cell, 186, 2023
8ZKH
DownloadVisualize
BU of 8zkh by Molmil
Structure of Polycystin-1/Polycystin-2 complex with phosphatidylglycerol-bound
分子名称: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Chen, M.Y, Su, Q, Shi, Y.G.
登録日2024-05-16
公開日2025-05-21
最終更新日2025-07-16
実験手法ELECTRON MICROSCOPY (2.3 Å)
主引用文献Structure of Polycystin-1/Polycystin-2 complex with phosphatidylglycerol-bound
To Be Published
5M53
DownloadVisualize
BU of 5m53 by Molmil
Nek2 bound to arylaminopurine inhibitor 11
分子名称: 1,2-ETHANEDIOL, 3-[[6-(cyclohexylmethoxy)-7~{H}-purin-2-yl]amino]-~{N},~{N}-dimethyl-benzamide, DI(HYDROXYETHYL)ETHER, ...
著者Bayliss, R, Carr, K.H.
登録日2016-10-20
公開日2016-11-09
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure-guided design of purine-based probes for selective Nek2 inhibition.
Oncotarget, 8, 2017
8VJV
DownloadVisualize
BU of 8vjv by Molmil
Structure of Human Neurolysin in complex with dynorphin A8(1-8) peptide
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Dynorphin A(1-8), ...
著者Shi, K, Aihara, H.
登録日2024-01-08
公開日2024-08-21
実験手法X-RAY DIFFRACTION (2.12 Å)
主引用文献Structural basis of divergent substrate recognition and inhibition of human neurolysin.
Sci Rep, 14, 2024
6Z66
DownloadVisualize
BU of 6z66 by Molmil
Crystal structure of apo-state neurotensin receptor 1
分子名称: Neurotensin receptor type 1,Neurotensin receptor type 1,DARPin
著者Deluigi, M, Klipp, A, Hilge, M, Merklinger, L, Klenk, C, Plueckthun, A.
登録日2020-05-27
公開日2021-02-10
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (3.192 Å)
主引用文献Complexes of the neurotensin receptor 1 with small-molecule ligands reveal structural determinants of full, partial, and inverse agonism.
Sci Adv, 7, 2021
8RP3
DownloadVisualize
BU of 8rp3 by Molmil
Alpha-Methylacyl-CoA racemase from Mycobacterium tuberculosis (H126A mutant)
分子名称: 1,2-ETHANEDIOL, Alpha-methylacyl-CoA racemase
著者Mojanaga, O.O, Acharya, K.R, Lloyd, M.D.
登録日2024-01-12
公開日2024-04-10
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献alpha-Methylacyl-CoA Racemase from Mycobacterium tuberculosis -Detailed Kinetic and Structural Characterization of the Active Site.
Biomolecules, 14, 2024
9CM6
DownloadVisualize
BU of 9cm6 by Molmil
Horse liver alcohol dehydrogenase V203L in complex with NADH and N-cylcohexyl formamide
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Alcohol dehydrogenase E chain, CYCLOHEXYLFORMAMIDE, ...
著者Mukherjee, S, Boxer, S.G.
登録日2024-07-12
公開日2025-07-16
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献Role of Electrostatics in Hydride Transfer by Horse liver alcohol dehydrogenase
To Be Published
4XCZ
DownloadVisualize
BU of 4xcz by Molmil
X-ray structure of the N-formyltransferase QdtF from Providencia alcalifaciens in complex with TDP-Qui3n and N5-THF
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, N-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acid, ...
著者Thoden, J.B, Woodford, C.R, Holden, H.M.
登録日2014-12-18
公開日2015-01-21
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献New Role for the Ankyrin Repeat Revealed by a Study of the N-Formyltransferase from Providencia alcalifaciens.
Biochemistry, 54, 2015
6RC6
DownloadVisualize
BU of 6rc6 by Molmil
Crystal structure of NAD kinase 1 from Listeria monocytogenes in complexe with an adenine derivative
分子名称: 3-[6-azanyl-9-[(2~{R})-oxan-2-yl]purin-8-yl]prop-2-yn-1-ol, CITRIC ACID, NAD kinase 1
著者Gelin, M, Labesse, G.
登録日2019-04-11
公開日2020-02-19
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献From Substrate to Fragments to Inhibitor ActiveIn VivoagainstStaphylococcus aureus.
Acs Infect Dis., 6, 2020
5XXM
DownloadVisualize
BU of 5xxm by Molmil
Crystal structure of GH3 beta-glucosidase from Bacteroides thetaiotaomicron in complex with gluconolactone
分子名称: D-glucono-1,5-lactone, MAGNESIUM ION, Periplasmic beta-glucosidase, ...
著者Nakajima, M, Ishiguro, R, Tanaka, N, Abe, K, Maeda, T, Miyanaga, A, Takahash, Y, Sugimoto, N, Nakai, H, Taguchi, H.
登録日2017-07-04
公開日2017-12-13
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Function and structure relationships of a beta-1,2-glucooligosaccharide-degrading beta-glucosidase.
FEBS Lett., 591, 2017
8YXQ
DownloadVisualize
BU of 8yxq by Molmil
NADPH and 1-benzyl-4-methylpiperidin-3-one complex structure of Imine Reductase wild type from Pochonia chlamydosporia 170
分子名称: (4~{R})-4-methyl-1-(phenylmethyl)piperidin-3-one, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DI(HYDROXYETHYL)ETHER, ...
著者Shi, M, Zheng, G.
登録日2024-04-02
公開日2025-07-09
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献NADPH and 1-benzyl-4-methylpiperidin-3-one complex structure of Imine Reductase wild type from Pochonia chlamydosporia 170
To Be Published
8RPC
DownloadVisualize
BU of 8rpc by Molmil
Crystal structure of PfCLK3 with TCMDC-135051
分子名称: 1,2-ETHANEDIOL, 4-[2-[5-(diethylaminomethyl)-2-methoxy-phenyl]-1~{H}-pyrrolo[2,3-b]pyridin-4-yl]-2-propan-2-yl-benzoic acid, GLYCEROL, ...
著者Yelland, T.S, Benazir, A, Hole, A.
登録日2024-01-15
公開日2024-11-06
最終更新日2024-11-27
実験手法X-RAY DIFFRACTION (2.079 Å)
主引用文献Targeting Pf CLK3 with Covalent Inhibitors: A Novel Strategy for Malaria Treatment.
J.Med.Chem., 67, 2024
9BA0
DownloadVisualize
BU of 9ba0 by Molmil
Structural mechanism of CB1R binding to peripheral and biased inverse agonists
分子名称: CNb36, Cannabinoid receptor 1,Glycogen synthase, N-(N-{(E)-[(4S)-3-(4-chlorophenyl)-4-phenyl-4,5-dihydro-1H-pyrazol-1-yl][4-(trifluoromethyl)benzene-1-sulfonamido]methylidene}carbamimidoyl)acetamide
著者Kumari, P, Dvoracsko, S, Enos, M.D, Ramesh, K, Lim, D, Hassan, S.A, Kunos, G, Cinar, R, Iyer, M.R, Rosenbaum, D.M.
登録日2024-04-03
公開日2024-11-20
最終更新日2025-05-28
実験手法ELECTRON MICROSCOPY (3.13 Å)
主引用文献Structural mechanism of CB 1 R binding to peripheral and biased inverse agonists.
Nat Commun, 15, 2024
6R5N
DownloadVisualize
BU of 6r5n by Molmil
The crystal structure of Glycoside Hydrolase BglX from P. aeruginosa in complex with 1-deoxynojirimycin
分子名称: 1-DEOXYNOJIRIMYCIN, MAGNESIUM ION, Periplasmic beta-glucosidase, ...
著者Batuecas, M.T, Hermoso, J.A.
登録日2019-03-25
公開日2020-04-15
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Catalytic Cycle of Glycoside Hydrolase BglX fromPseudomonas aeruginosaand Its Implications for Biofilm Formation.
Acs Chem.Biol., 15, 2020
966C
DownloadVisualize
BU of 966c by Molmil
CRYSTAL STRUCTURE OF FIBROBLAST COLLAGENASE-1 COMPLEXED TO A DIPHENYL-ETHER SULPHONE BASED HYDROXAMIC ACID
分子名称: CALCIUM ION, MMP-1, N-HYDROXY-2-[4-(4-PHENOXY-BENZENESULFONYL)-TETRAHYDRO-PYRAN-4-YL]-ACETAMIDE, ...
著者Lovejoy, B, Welch, A, Carr, S, Luong, C, Broka, C, Hendricks, R.T, Campbell, J, Walker, K, Martin, R, Van Wart, H, Browner, M.F.
登録日1998-08-07
公開日1999-08-07
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures of MMP-1 and -13 reveal the structural basis for selectivity of collagenase inhibitors.
Nat.Struct.Biol., 6, 1999

243083

件を2025-10-15に公開中

PDB statisticsPDBj update infoContact PDBjnumon