Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3CBE
DownloadVisualize
BU of 3cbe by Molmil
Development of a family of redox-sensitive green fluorescent protein indicators for use in relatively oxidizing subcellular environments
分子名称: Green fluorescent protein, MAGNESIUM ION
著者Lohman, J.R.
登録日2008-02-21
公開日2008-08-19
最終更新日2021-10-20
実験手法X-RAY DIFFRACTION (1.488 Å)
主引用文献Development of a family of redox-sensitive green fluorescent protein indicators for use in relatively oxidizing subcellular environments
Biochemistry, 47, 2008
5U33
DownloadVisualize
BU of 5u33 by Molmil
Crystal structure of AacC2c1-sgRNA-extended non-target DNA ternary complex
分子名称: CRISPR-associated endonuclease C2c1, Non-target DNA strand, SULFATE ION, ...
著者Yang, H, Gao, P, Rajashankar, K.R, Patel, D.J.
登録日2016-12-01
公開日2017-01-25
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.75 Å)
主引用文献PAM-Dependent Target DNA Recognition and Cleavage by C2c1 CRISPR-Cas Endonuclease.
Cell, 167, 2016
3BNE
DownloadVisualize
BU of 3bne by Molmil
Lipoxygenase-1 (Soybean) I553A Mutant
分子名称: FE (III) ION, Seed lipoxygenase-1
著者Tomchick, D.R.
登録日2007-12-14
公開日2008-04-01
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Enzyme structure and dynamics affect hydrogen tunneling: the impact of a remote side chain (I553) in soybean lipoxygenase-1.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3BPK
DownloadVisualize
BU of 3bpk by Molmil
Crystal structure of nitrilotriacetate monooxygenase component B from Bacillus cereus
分子名称: CHLORIDE ION, Nitrilotriacetate monooxygenase component B, SULFATE ION
著者Osipiuk, J, Quartey, P, Abdullah, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
登録日2007-12-18
公開日2008-01-01
最終更新日2017-10-25
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献X-ray crystal structure of nitrilotriacetate monooxygenase component B from Bacillus cereus.
To be Published
3BUB
DownloadVisualize
BU of 3bub by Molmil
Golgi alpha-mannosidase II with an empty active site
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Alpha-mannosidase 2, ...
著者Kuntz, D.A, Rose, D.R.
登録日2008-01-02
公開日2008-07-01
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.38 Å)
主引用文献Probing the substrate specificity of Golgi alpha-mannosidase II by use of synthetic oligosaccharides and a catalytic nucleophile mutant.
J.Am.Chem.Soc., 130, 2008
3C5C
DownloadVisualize
BU of 3c5c by Molmil
Crystal structure of human Ras-like, family 12 protein in complex with GDP
分子名称: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, RAS-like protein 12, ...
著者Shen, L, Tong, Y, Tempel, W, Loppnau, P, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
登録日2008-01-31
公開日2008-02-12
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of human Ras-like, family 12 protein in complex with GDP.
To be Published
6MSH
DownloadVisualize
BU of 6msh by Molmil
Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome
分子名称: 26S proteasome complex subunit SEM1, 26S proteasome non-ATPase regulatory subunit 1, 26S proteasome non-ATPase regulatory subunit 11, ...
著者Mao, Y.D.
登録日2018-10-16
公開日2018-11-21
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome.
Nature, 565, 2019
7KTR
DownloadVisualize
BU of 7ktr by Molmil
Cryo-EM structure of the human SAGA coactivator complex (TRRAP, core)
分子名称: Ataxin-7, INOSITOL HEXAKISPHOSPHATE, Isoform 3 of Transcription factor SPT20 homolog, ...
著者Herbst, D.A, Esbin, M.N, Nogales, E.
登録日2020-11-24
公開日2021-11-10
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (2.93 Å)
主引用文献Structure of the human SAGA coactivator complex.
Nat.Struct.Mol.Biol., 28, 2021
6MSD
DownloadVisualize
BU of 6msd by Molmil
Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome
分子名称: 26S proteasome complex subunit SEM1, 26S proteasome non-ATPase regulatory subunit 1, 26S proteasome non-ATPase regulatory subunit 11, ...
著者Mao, Y.D.
登録日2018-10-16
公開日2018-12-05
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome.
Nature, 565, 2019
5UE5
DownloadVisualize
BU of 5ue5 by Molmil
proMMP-7 with heparin octasaccharide bound to the catalytic domain
分子名称: 2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose, CALCIUM ION, Matrilysin, ...
著者Fulcher, Y.G, Prior, S.H, Linhardt, R.J, Van Doren, S.R.
登録日2016-12-29
公開日2017-07-19
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Glycan Activation of a Sheddase: Electrostatic Recognition between Heparin and proMMP-7.
Structure, 25, 2017
7KTS
DownloadVisualize
BU of 7kts by Molmil
Negative stain EM structure of the human SAGA coactivator complex (TRRAP, core, splicing module)
分子名称: Ataxin-7, Isoform 3 of Transcription factor SPT20 homolog, STAGA complex 65 subunit gamma, ...
著者Herbst, D.A, Esbin, M.N, Nogales, E.
登録日2020-11-24
公開日2021-11-10
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (19.09 Å)
主引用文献Structure of the human SAGA coactivator complex.
Nat.Struct.Mol.Biol., 28, 2021
5UE2
DownloadVisualize
BU of 5ue2 by Molmil
proMMP-7 with heparin octasaccharide bridging between domains
分子名称: 2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose, CALCIUM ION, Matrilysin, ...
著者Fulcher, Y.G, Prior, S.H, Linhardt, R.J, Van Doren, S.R.
登録日2016-12-29
公開日2017-07-19
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Glycan Activation of a Sheddase: Electrostatic Recognition between Heparin and proMMP-7.
Structure, 25, 2017
5V1A
DownloadVisualize
BU of 5v1a by Molmil
Structure of S. cerevisiae Ulp2:Csm1 complex
分子名称: Monopolin complex subunit CSM1, Ubiquitin-like-specific protease 2
著者Singh, N, Corbett, K.D.
登録日2017-03-01
公開日2017-05-17
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.14 Å)
主引用文献Recruitment of a SUMO isopeptidase to rDNA stabilizes silencing complexes by opposing SUMO targeted ubiquitin ligase activity.
Genes Dev., 31, 2017
7L21
DownloadVisualize
BU of 7l21 by Molmil
Pyruvate Kinase M2 mutant-N70D
分子名称: 1,6-di-O-phosphono-beta-D-fructofuranose, GLYCEROL, MAGNESIUM ION, ...
著者Nandi, S, Dey, M.
登録日2020-12-16
公開日2021-12-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献Identification of residues involved in allosteric signal transmission from amino acid binding site of pyruvate kinase muscle isoform 2.
Plos One, 18, 2023
7LUP
DownloadVisualize
BU of 7lup by Molmil
Human TRiC/CCT complex with reovirus outer capsid protein sigma-3
分子名称: Outer capsid protein sigma-3, T-complex protein 1 subunit alpha, T-complex protein 1 subunit beta, ...
著者Knowlton, J.J, Gestaut, D, Ma, B, Taylor, G, Seven, A.B, Leitner, A, Wilson, G.J, Shanker, S, Yates, N.A, Prasad, B.V.V, Aebersold, R, Chiu, W, Frydman, J, Dermody, T.S.
登録日2021-02-22
公開日2021-03-03
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (6.2 Å)
主引用文献Structural and functional dissection of reovirus capsid folding and assembly by the prefoldin-TRiC/CCT chaperone network.
Proc.Natl.Acad.Sci.USA, 118, 2021
5VAX
DownloadVisualize
BU of 5vax by Molmil
Bcl-2 complex with Beclin 1 BH3 domain
分子名称: Apoptosis regulator Bcl-2 -- Bcl-2-like protein 1 Chimera, Beclin-1
著者Lee, E.F, Smith, B.J, Yao, S, Fairlie, W.D.
登録日2017-03-28
公開日2018-04-04
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Bcl-2 complex with Beclin 1 pT108 BH3 domain
To Be Published
7LUM
DownloadVisualize
BU of 7lum by Molmil
Human TRiC in ATP/AlFx closed state
分子名称: T-complex protein 1 subunit alpha, T-complex protein 1 subunit beta, T-complex protein 1 subunit delta, ...
著者Knowlton, J.J, Gestaut, D, Ma, B, Taylor, G, Seven, A.B, Leitner, A, Wilson, G.J, Shanker, S, Yates, N.A, Prasad, B.V.V, Aebersold, R, Chiu, W, Frydman, J, Dermody, T.S.
登録日2021-02-22
公開日2021-03-03
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (4.5 Å)
主引用文献Structural and functional dissection of reovirus capsid folding and assembly by the prefoldin-TRiC/CCT chaperone network.
Proc.Natl.Acad.Sci.USA, 118, 2021
5JPW
DownloadVisualize
BU of 5jpw by Molmil
Molecular basis for protein recognition specificity of the DYNLT1/Tctex1 canonical binding groove. Characterization of the interaction with activin receptor IIB
分子名称: Dynein light chain Tctex-type 1,Cytoplasmic dynein 1 intermediate chain 2
著者Rodriguez-Crespo, I, Merino-Gracia, J, Bruix, M, Zamora-Carreras, H.
登録日2016-05-04
公開日2016-08-17
最終更新日2024-07-03
実験手法SOLUTION NMR
主引用文献Molecular Basis for the Protein Recognition Specificity of the Dynein Light Chain DYNLT1/Tctex1: CHARACTERIZATION OF THE INTERACTION WITH ACTIVIN RECEPTOR IIB.
J.Biol.Chem., 291, 2016
5W0B
DownloadVisualize
BU of 5w0b by Molmil
Structure of human TUT7 catalytic module (CM)
分子名称: IODIDE ION, SULFATE ION, Terminal uridylyltransferase 7, ...
著者Faehnle, C.R, Walleshauser, J, Joshua-Tor, L.
登録日2017-05-30
公開日2017-06-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.614 Å)
主引用文献Multi-domain utilization by TUT4 and TUT7 in control of let-7 biogenesis.
Nat. Struct. Mol. Biol., 24, 2017
5VX0
DownloadVisualize
BU of 5vx0 by Molmil
Bak in complex with Bim-h3Glg
分子名称: 1,2-ETHANEDIOL, Bcl-2 homologous antagonist/killer, Bcl-2-like protein 11, ...
著者Brouwer, J.M, Lan, P, Lessene, G, Colman, P.M, Czabotar, P.E.
登録日2017-05-23
公開日2017-11-15
最終更新日2020-01-08
実験手法X-RAY DIFFRACTION (1.599 Å)
主引用文献Conversion of Bim-BH3 from Activator to Inhibitor of Bak through Structure-Based Design.
Mol. Cell, 68, 2017
5VR6
DownloadVisualize
BU of 5vr6 by Molmil
Structure of Human Sts-1 histidine phosphatase domain with sulfate bound
分子名称: SULFATE ION, Ubiquitin-associated and SH3 domain-containing protein B
著者Zhou, W, Yin, Y, Weinheimer, A.W, Kaur, N, Carpino, N, French, J.B.
登録日2017-05-10
公開日2017-08-16
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Structural and Functional Characterization of the Histidine Phosphatase Domains of Human Sts-1 and Sts-2.
Biochemistry, 56, 2017
7LUL
DownloadVisualize
BU of 7lul by Molmil
Structure of the MM2 Erbin PDZ variant in complex with a high-affinity peptide
分子名称: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, ...
著者Singer, A.U, Teyra, J, McLaughlin, M, Ernst, A, Sicheri, F, Sidhu, S.S.
登録日2021-02-22
公開日2021-07-28
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Comprehensive Assessment of the Relationship Between Site -2 Specificity and Helix alpha 2 in the Erbin PDZ Domain.
J.Mol.Biol., 433, 2021
7LC2
DownloadVisualize
BU of 7lc2 by Molmil
Crystal Structure of KRAS4b-Q61R (GMPPNP-bound) in complex with the RAS-binding domain (RBD) of SIN1
分子名称: GTPase KRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
著者Dharmaiah, S, Simanshu, D.K.
登録日2021-01-09
公開日2021-07-28
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献RAS interaction with Sin1 is dispensable for mTORC2 assembly and activity.
Proc.Natl.Acad.Sci.USA, 118, 2021
7LC1
DownloadVisualize
BU of 7lc1 by Molmil
Crystal Structure of KRAS4b (GMPPNP-bound) in complex with the RBD-PH domains of SIN1
分子名称: Isoform 2B of GTPase KRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
著者Dharmaiah, S, Simanshu, D.K.
登録日2021-01-09
公開日2021-08-04
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献RAS interaction with Sin1 is dispensable for mTORC2 assembly and activity.
Proc.Natl.Acad.Sci.USA, 118, 2021
5VQA
DownloadVisualize
BU of 5vqa by Molmil
Structure of human TRIP13, ATP-bound form
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Pachytene checkpoint protein 2 homolog
著者Ye, Q, Corbett, K.D.
登録日2017-05-08
公開日2017-06-14
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.54 Å)
主引用文献The AAA+ ATPase TRIP13 remodels HORMA domains through N-terminal engagement and unfolding.
EMBO J., 36, 2017

223532

件を2024-08-07に公開中

PDB statisticsPDBj update infoContact PDBjnumon