PDB: 462 件ウェブページステータス検索Chemie searchBIRD

---

6D6K	Structure of polyribonucleotide nucleotidyltransferase from Acinetobacter baumannii 分子名称: Polyribonucleotide nucleotidyltransferase 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2018-04-21 公開日 2018-05-02 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure of polyribonucleotide nucleotidyltransferase from Acinetobacter baumannii to be published
2VUM	Alpha-amanitin inhibited complete RNA polymerase II elongation complex 分子名称: 5'-D(*AP*AP*AP*CP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3', 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP *GP*TP*TP*AP*CP*GP*CP*CP*BRUP*GP*GP*TP*CP*AP*TP*T)-3', 5'-R(*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3', ... 著者 Brueckner, F, Cramer, P. 登録日 2008-05-27 公開日 2008-06-17 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Structural Basis of Transcription Inhibition by Alpha-Amanitin and Implications for RNA Polymerase II Translocation. Nat.Struct.Mol.Biol., 15, 2008
3PO3	Arrested RNA Polymerase II reactivation intermediate 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, DNA non-template strand, ... 著者 Cheung, A.C.M, Cramer, P. 登録日 2010-11-21 公開日 2011-03-02 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Structural basis of RNA polymerase II backtracking, arrest and reactivation. Nature, 471, 2011
3JAP	Structure of a partial yeast 48S preinitiation complex in closed conformation 分子名称: 18S rRNA, MAGNESIUM ION, METHIONINE, ... 著者 Llacer, J.L, Hussain, T, Ramakrishnan, V. 登録日 2015-06-18 公開日 2015-08-12 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (4.9 Å) 主引用文献 Conformational Differences between Open and Closed States of the Eukaryotic Translation Initiation Complex. Mol.Cell, 59, 2015
3PO2	Arrested RNA Polymerase II elongation complex 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, DI(HYDROXYETHYL)ETHER, ... 著者 Cheung, A.C.M, Cramer, P. 登録日 2010-11-21 公開日 2011-03-02 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Structural basis of RNA polymerase II backtracking, arrest and reactivation. Nature, 471, 2011
3J1N	Cryo-EM map of a yeast minimal preinitiation complex interacting with the Mediator Head module 分子名称: DNA-directed RNA polymerase II subunit RPABC1, DNA-directed RNA polymerase II subunit RPABC2, DNA-directed RNA polymerase II subunit RPABC3, ... 著者 Asturias, F.J, Imasaki, T. 登録日 2012-03-29 公開日 2013-03-06 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (16 Å) 主引用文献 Interaction of the mediator head module with RNA polymerase II. Structure, 20, 2012
3K1F	Crystal structure of RNA Polymerase II in complex with TFIIB 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Kostrewa, D, Zeller, M.E, Armache, K.-J, Seizl, M, Leike, K, Thomm, M, Cramer, P. 登録日 2009-09-27 公開日 2009-11-10 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (4.3 Å) 主引用文献 RNA polymerase II-TFIIB structure and mechanism of transcription initiation. Nature, 462, 2009
6EXN	Post-catalytic P complex spliceosome with 3' splice site docked 分子名称: GUANOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, Intron lariat: UBC4 RNA, ... 著者 Wilkinson, M.E, Fica, S.M, Galej, W.P, Norman, C.M, Newman, A.J, Nagai, K. 登録日 2017-11-08 公開日 2018-01-17 最終更新日 2020-10-07 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Postcatalytic spliceosome structure reveals mechanism of 3'-splice site selection. Science, 358, 2017
5SVA	Mediator-RNA Polymerase II Pre-Initiation Complex 分子名称: 108bp HIS4 Promoter Non-template Strand (-92/+16), 108bp HIS4 Promoter Template Strand (+16/-92), DNA repair helicase RAD25, ... 著者 Robinson, P.J, Bushnell, D.A, Kornberg, R.D. 登録日 2016-08-05 公開日 2016-09-28 最終更新日 2019-11-27 実験手法 ELECTRON MICROSCOPY (15.3 Å) 主引用文献 Structure of a Complete Mediator-RNA Polymerase II Pre-Initiation Complex. Cell, 166, 2016
3QT1	RNA polymerase II variant containing A Chimeric RPB9-C11 subunit 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Ruan, W, Lehmann, E, Thomm, M, Kostrewa, D, Cramer, P. 登録日 2011-02-22 公開日 2011-03-23 最終更新日 2017-08-23 実験手法 X-RAY DIFFRACTION (4.3 Å) 主引用文献 Evolution of two modes of intrinsic RNA polymerase transcript cleavage. J.Biol.Chem., 286, 2011
5U5Q	12 Subunit RNA Polymerase II at Room Temperature collected using SFX 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Bushnell, D.A, Oberthur, D, Mariani, V, Yefanov, O, Tolstikova, A, Barty, A. 登録日 2016-12-07 公開日 2017-03-29 最終更新日 2019-11-27 実験手法 X-RAY DIFFRACTION (3.8 Å) 主引用文献 Double-flow focused liquid injector for efficient serial femtosecond crystallography. Sci Rep, 7, 2017
5U0S	Cryo-EM structure of the Mediator-RNAPII complex 分子名称: Mediator complex subunit 10, Mediator complex subunit 11, Mediator complex subunit 14, ... 著者 Tsai, K.-L, Yu, X, Gopalan, S, Chao, T.-C, Zhang, Y, Florens, L, Washburn, M.P, Murakami, K, Conaway, R.C, Conaway, J.W, Asturias, F. 登録日 2016-11-26 公開日 2017-03-08 最終更新日 2020-01-01 実験手法 ELECTRON MICROSCOPY (7.8 Å) 主引用文献 Mediator structure and rearrangements required for holoenzyme formation. Nature, 544, 2017
8JH2	RNA polymerase II elongation complex bound with Elf1, Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome 分子名称: DNA (218-MER), DNA (40-MER), DNA-directed RNA polymerase subunit, ... 著者 Akatsu, M, Fujita, R, Ogasawara, M, Ehara, H, Kujirai, T, Takizawa, Y, Sekine, S, Kurumizaka, H. 登録日 2023-05-22 公開日 2023-11-29 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (5.7 Å) 主引用文献 Cryo-EM structures of RNA polymerase II-nucleosome complexes rewrapping transcribed DNA. J.Biol.Chem., 299, 2023
8JH4	RNA polymerase II elongation complex containing 60 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome 分子名称: DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... 著者 Akatsu, M, Fujita, R, Ogasawara, M, Ehara, H, Kujirai, T, Takizawa, Y, Sekine, S, Kurumizaka, H. 登録日 2023-05-22 公開日 2023-11-29 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Cryo-EM structures of RNA polymerase II-nucleosome complexes rewrapping transcribed DNA. J.Biol.Chem., 299, 2023
8JH3	RNA polymerase II elongation complex containing 40 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome 分子名称: DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... 著者 Akatsu, M, Fujita, R, Ogasawara, M, Ehara, H, Kujirai, T, Takizawa, Y, Sekine, S, Kurumizaka, H. 登録日 2023-05-22 公開日 2023-11-29 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Cryo-EM structures of RNA polymerase II-nucleosome complexes rewrapping transcribed DNA. J.Biol.Chem., 299, 2023
8JCH	Cryo-EM structure of yeast Rat1-bound Pol II pre-termination transcription complex 1 (Pol II Rat1-PTTC1) 分子名称: 5'-3' exoribonuclease 2, DNA (38-MER), DNA-directed RNA polymerase II subunit RPB1, ... 著者 Zeng, Y, Zhang, Y. 登録日 2023-05-11 公開日 2024-01-31 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Structural basis of exoribonuclease-mediated mRNA transcription termination. Nature, 628, 2024
6O85	Electron cryo-microscopy of the eukaryotic translation initiation factor 2B bound to eukaryotic translation initiation factor 2 from Homo sapiens 分子名称: 2-(4-chloranylphenoxy)-~{N}-[4-[2-(4-chloranylphenoxy)ethanoylamino]cyclohexyl]ethanamide, Eukaryotic translation initiation factor 2 subunit 1, Eukaryotic translation initiation factor 2 subunit 3, ... 著者 Nguyen, H.C, Kenner, L.R, Frost, A.S. 登録日 2019-03-08 公開日 2019-05-15 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.03 Å) 主引用文献 eIF2B-catalyzed nucleotide exchange and phosphoregulation by the integrated stress response. Science, 364, 2019
6O81	Electron cryo-microscopy of the eukaryotic translation initiation factor 2B bound to translation initiation factor 2 from Homo sapiens 分子名称: 2-(4-chloranylphenoxy)-~{N}-[4-[2-(4-chloranylphenoxy)ethanoylamino]cyclohexyl]ethanamide, Eukaryotic translation initiation factor 2 subunit 1, Eukaryotic translation initiation factor 2 subunit 3, ... 著者 Nguyen, H, Kenner, L, Frost, A. 登録日 2019-03-08 公開日 2019-05-15 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.21 Å) 主引用文献 eIF2B-catalyzed nucleotide exchange and phosphoregulation by the integrated stress response. Science, 364, 2019
6O9Z	Electron cryo-microscopy of the eukaryotic translation initiation factor 2B bound to eukaryotic translation initiation factor 2 from Homo sapiens 分子名称: Eukaryotic translation initiation factor 2 subunit 1, Translation initiation factor eIF-2B subunit alpha, Translation initiation factor eIF-2B subunit beta, ... 著者 Nguyen, H.C, Kenner, L.R, Frost, A.S. 登録日 2019-03-15 公開日 2019-05-15 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.03 Å) 主引用文献 eIF2B-catalyzed nucleotide exchange and phosphoregulation by the integrated stress response. Science, 364, 2019
6O9L	Human holo-PIC in the closed state 分子名称: CDK-activating kinase assembly factor MAT1, Cyclin-H, Cyclin-dependent kinase 7, ... 著者 Yan, C.L, Dodd, T, He, Y, Tainer, J.A, Tsutakawa, S.E, Ivanov, I. 登録日 2019-03-14 公開日 2019-05-29 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (7.2 Å) 主引用文献 Transcription preinitiation complex structure and dynamics provide insight into genetic diseases. Nat.Struct.Mol.Biol., 26, 2019
7QP7	Structure of the human 48S initiation complex in closed state (h48S AUG closed) 分子名称: 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ... 著者 Yi, S.-H, Petrychenko, V, Schliep, J.E, Goyal, A, Linden, A, Chari, A, Urlaub, H, Stark, H, Rodnina, M.V, Adio, S, Fischer, N. 登録日 2022-01-03 公開日 2022-05-11 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Conformational rearrangements upon start codon recognition in human 48S translation initiation complex. Nucleic Acids Res., 50, 2022
7QP6	Structure of the human 48S initiation complex in open state (h48S AUG open) 分子名称: 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ... 著者 Yi, S.-H, Petrychenko, V, Schliep, J.E, Goyal, A, Linden, A, Chari, A, Urlaub, H, Stark, H, Rodnina, M.V, Adio, S, Fischer, N. 登録日 2022-01-03 公開日 2022-05-11 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (4.7 Å) 主引用文献 Conformational rearrangements upon start codon recognition in human 48S translation initiation complex. Nucleic Acids Res., 50, 2022
7SYS	Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII). 分子名称: 18S rRNA, Eukaryotic translation initiation factor 1A, X-chromosomal, ... 著者 Brown, Z.P, Abaeva, I.S, De, S, Hellen, C.U.T, Pestova, T.V, Frank, J. 登録日 2021-11-25 公開日 2022-07-27 最終更新日 2022-08-24 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Molecular architecture of 40S translation initiation complexes on the hepatitis C virus IRES. Embo J., 41, 2022
7SYR	Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt). 分子名称: 18S rRNA, Eukaryotic translation initiation factor 1A, X-chromosomal, ... 著者 Brown, Z.P, Abaeva, I.S, De, S, Hellen, C.U.T, Pestova, T.V, Frank, J. 登録日 2021-11-25 公開日 2022-07-27 最終更新日 2022-08-24 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Molecular architecture of 40S translation initiation complexes on the hepatitis C virus IRES. Embo J., 41, 2022
1NT9	Complete 12-subunit RNA polymerase II 分子名称: DNA-DIRECTED RNA POLYMERASE II 13.6 KD POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT, ... 著者 Armache, K.-J, Kettenberger, H, Cramer, P. 登録日 2003-01-29 公開日 2003-04-22 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (4.2 Å) 主引用文献 Architecture of initiation-competent 12-subunit RNA polymerase II Proc.Natl.Acad.Sci.USA, 100, 2003

<12345678910111213141516>