PDB: 5653 件ウェブページステータス検索Chemie searchBIRD

---

4NDK	Crystal structure of a computational designed engrailed homeodomain variant fused with YFP 分子名称: E23P-YFP, GFP-like fluorescent chromoprotein FP506, related, ... 著者 Mou, Y, Mayo, S.L. 登録日 2013-10-26 公開日 2014-11-05 最終更新日 2017-10-18 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Using Molecular Dynamics Simulations as an Aid in the Prediction of Domain Swapping of Computationally Designed Protein Variants. J.Mol.Biol., 427, 2015
4NDJ	Crystal Structure of a computational designed engrailed homeodomain variant fused with YFP 分子名称: Green fluorescent protein, chimeric construct,GFP-like fluorescent chromoprotein FP506, related 著者 Mou, Y, Mayo, S.L. 登録日 2013-10-26 公開日 2014-11-05 最終更新日 2017-10-18 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Using Molecular Dynamics Simulations as an Aid in the Prediction of Domain Swapping of Computationally Designed Protein Variants. J.Mol.Biol., 427, 2015
6C9I	Single-Particle reconstruction of DARP14 - A designed protein scaffold displaying ~17kDa DARPin proteins - Scaffold 分子名称: DARP14 - Subunit A with DARPin, DARP14 - Subunit B 著者 Gonen, S, Liu, Y, Yeates, T.O, Gonen, T. 登録日 2018-01-26 公開日 2018-03-21 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.09 Å) 主引用文献 Near-atomic cryo-EM imaging of a small protein displayed on a designed scaffolding system. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6C9K	Single-Particle reconstruction of DARP14 - A designed protein scaffold displaying ~17kDa DARPin proteins 分子名称: DARP14 - Subunit A with DARPin, DARP14 - Subunit B 著者 Gonen, S, Liu, Y, Yeates, T.O, Gonen, T. 登録日 2018-01-26 公開日 2018-03-21 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.49 Å) 主引用文献 Near-atomic cryo-EM imaging of a small protein displayed on a designed scaffolding system. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
3R2X	Crystal structure of the de novo designed binding protein HB36.3 in complex the the 1918 influenza virus hemagglutinin 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, HB36.3, designed hemagglutinin binding protein, ... 著者 Ekiert, D.C, Wilson, I.A. 登録日 2011-03-14 公開日 2011-05-11 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Computational design of proteins targeting the conserved stem region of influenza hemagglutinin. Science, 332, 2011
3LJM	Structure of de novo designed apo peptide coil SER L9C 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, COIL SER L9C, ... 著者 Chakraborty, S. 登録日 2010-01-26 公開日 2010-09-15 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.36 Å) 主引用文献 Structural comparisons of apo- and metalated three-stranded coiled coils clarify metal binding determinants in thiolate containing designed peptides. J.Am.Chem.Soc., 132, 2010
4PN8	A de novo designed pentameric coiled coil CC-Pent. 分子名称: CC-Pent 著者 Wood, C.W, Burton, A.J, Thomson, A.R, Brady, R.L, Woolfson, D.N. 登録日 2014-05-23 公開日 2014-10-22 最終更新日 2017-09-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Computational design of water-soluble alpha-helical barrels. Science, 346, 2014
2KIK	An artificial di-iron oxo-protein with phenol oxidase activity 分子名称: Artificial diiron protein, ZINC ION 著者 Maglio, O, Lombardi, A. 登録日 2009-05-06 公開日 2009-11-10 最終更新日 2022-03-16 実験手法 SOLUTION NMR 主引用文献 An artificial di-iron oxo-protein with phenol oxidase activity To be Published
4J9T	Crystal structure of a putative, de novo designed unnatural amino acid dependent metalloprotein, northeast structural genomics consortium target OR61 分子名称: ARSENIC, GLYCEROL, designed unnatural amino acid dependent metalloprotein 著者 Forouhar, F, Lew, S, Seetharaman, J, Mills, J.H, Khare, S.D, Everett, J.K, Baker, D, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG) 登録日 2013-02-17 公開日 2013-03-27 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Computational design of an unnatural amino Acid dependent metalloprotein with atomic level accuracy. J.Am.Chem.Soc., 135, 2013
2MLB	NMR solution structure of a computational designed protein based on template of human erythrocytic ubiquitin 分子名称: redesigned ubiquitin 著者 Xiong, P, Wang, M, Zhang, J, Chen, Q, Liu, H. 登録日 2014-02-21 公開日 2014-10-29 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Protein design with a comprehensive statistical energy function and boosted by experimental selection for foldability Nat Commun, 5, 2014
6JCC	structure of a de novo protein D_1CY5_M1 分子名称: Computational designed protein based on evolution 著者 Meng, W, Feng, T. 登録日 2019-01-28 公開日 2019-03-13 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 structure of a computationally designed mutant protein D_1CY5_M1 To Be Published
8VSW	4-MERCAPTOPHENOL-ALPHA3C 分子名称: 4-mercaptophenol-alpha3C protein, 4-sulfanylphenol 著者 Tommos, C. 登録日 2024-01-24 公開日 2024-03-27 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Switching the proton-coupled electron transfer mechanism for non-canonical tyrosine residues in a de novo protein. Chem Sci, 15, 2024
7DCL	Crystal structure of the Zn-directed tetramer of the engineered cyt cb 562 variant, C96I/A38S AB5 分子名称: CHLORIDE ION, HEME C, ZINC ION, ... 著者 Song, W.J, Yu, J. 登録日 2020-10-26 公開日 2021-03-03 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Symmetry-related residues as promising hotspots for the evolution of de novo oligomeric enzymes. Chem Sci, 12, 2021
6LDF	Crystal structure of the Zn-directed tetramer of the engineered cyt cb 562 variant, C96K AB5 分子名称: CHLORIDE ION, HEME C, ZINC ION, ... 著者 Song, W.J, Yu, J. 登録日 2019-11-21 公開日 2021-03-03 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Symmetry-related residues as promising hotspots for the evolution of de novo oligomeric enzymes. Chem Sci, 12, 2021
6LDE	Crystal structure of the Zn-directed tetramer of the engineered cyt cb 562 variant, C96V AB5 分子名称: CHLORIDE ION, HEME C, ZINC ION, ... 著者 Song, W.J, Yu, J. 登録日 2019-11-21 公開日 2021-03-03 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Symmetry-related residues as promising hotspots for the evolution of de novo oligomeric enzymes. Chem Sci, 12, 2021
6LDG	Crystal structure of the Zn-directed tetramer of the engineered cyt cb 562 variant, C96I AB5 分子名称: CHLORIDE ION, HEME C, MAGNESIUM ION, ... 著者 Song, W.J, Yu, J. 登録日 2019-11-21 公開日 2021-03-03 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.98 Å) 主引用文献 Symmetry-related residues as promising hotspots for the evolution of de novo oligomeric enzymes. Chem Sci, 12, 2021
6FDB	Positively supercharged variant of the computationally designed cage protein O3-33 分子名称: Propanediol utilization protein 著者 Edwardson, T, Mori, T, Hilvert, D. 登録日 2017-12-22 公開日 2018-08-22 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3.619 Å) 主引用文献 Rational Engineering of a Designed Protein Cage for siRNA Delivery. J. Am. Chem. Soc., 140, 2018
3V45	Crystal Structure of de novo designed serine hydrolase OSH55, Northeast Structural Genomics Consortium Target OR130 分子名称: CHLORIDE ION, SODIUM ION, Serine hydrolase OSH55 著者 Kuzin, A, Su, M, Seetharaman, J, Maglaqui, M, Xiao, R, Kohan, E, Rajagopalan, S, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Baker, D, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG) 登録日 2011-12-14 公開日 2012-01-04 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Design of activated serine-containing catalytic triads with atomic-level accuracy. Nat.Chem.Biol., 10, 2014
5WP3	Crystal Structure of EED in complex with EB22 分子名称: EB22, Polycomb protein EED, UNKNOWN ATOM OR ION 著者 Dong, C, Tempel, W, Zhu, L, Moody, J.D, Baker, D, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC) 登録日 2017-08-03 公開日 2017-09-13 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 First critical repressive H3K27me3 marks in embryonic stem cells identified using designed protein inhibitor. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6ER6	Crystal structure of a computationally designed colicin endonuclease and immunity pair colEdes7/Imdes7 分子名称: Endonuclease colEdes7, immunity Imdes7 著者 Netzer, R, Listov, D, Dym, O, Albeck, S, Knop, O, Fleishman, S.J. 登録日 2017-10-17 公開日 2019-01-30 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Ultrahigh specificity in a network of computationally designed protein-interaction pairs. Nat Commun, 9, 2018
4ESS	Crystal Structure of E6D/L155R variant of de novo designed serine hydrolase OSH55, Northeast Structural Genomics Consortium (NESG) Target OR187 分子名称: OR187 著者 Kuzin, A, Su, M, Seetharaman, J, Kornhaber, K, Kornhaber, G, Rajagopalan, S, Baker, D, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG) 登録日 2012-04-23 公開日 2012-06-13 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.9971 Å) 主引用文献 Design of activated serine-containing catalytic triads with atomic-level accuracy. Nat.Chem.Biol., 10, 2014
4ETJ	Crystal Structure of E6H variant of de novo designed serine hydrolase OSH55, Northeast Structural Genomics Consortium (NESG) Target OR185 分子名称: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL, CHLORIDE ION, ... 著者 Kuzin, A, Su, M, Seetharaman, J, Kornhaber, K, Kornhaber, G, Rajagopalan, S, Baker, D, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG) 登録日 2012-04-24 公開日 2012-06-13 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.203 Å) 主引用文献 Design of activated serine-containing catalytic triads with atomic-level accuracy. Nat.Chem.Biol., 10, 2014
6VFL	BG505-SOSIP model reconstructed by subparticle extraction and refinement from a tetrahedral nanoparticle T33_dn10 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505-SOSIPv5.2(7S) - gp120, ... 著者 Antanasijevic, A, Ward, A.B. 登録日 2020-01-05 公開日 2020-07-22 最終更新日 2020-08-26 実験手法 ELECTRON MICROSCOPY (4.14 Å) 主引用文献 Structural and functional evaluation of de novo-designed, two-component nanoparticle carriers for HIV Env trimer immunogens. Plos Pathog., 16, 2020
8ED3	Structure of a nanoparticle with icosahedral symmetry 分子名称: Designed I3-01 icosahedron 著者 McCarthy, S, Gonen, S. 登録日 2022-09-02 公開日 2023-01-11 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Improved interface packing and design opportunities revealed by CryoEM analysis of a designed protein nanocage. Heliyon, 8, 2022
6OHH	Structure of EF1p2_mFAP2b bound to DFHBI 分子名称: (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one, CALCIUM ION, EF1p2_mFAP2b 著者 Doyle, L.A, Stoddard, B.L. 登録日 2019-04-05 公開日 2020-04-08 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Incorporation of sensing modalities into de novo designed fluorescence-activating proteins Nat Commun, 12, 2021

<30313233343536373839404142434445>