4NDK

Crystal structure of a computational designed engrailed homeodomain variant fused with YFP

Summary for 4NDK

Related4NDJ
DescriptorE23P-YFP, GFP-like fluorescent chromoprotein FP506, related, chimeric construct, (2 entities in total)
Functional Keywordshelix-turn-helix, fluorescent protein, de novo protein
Biological sourceAequorea victoria (Jellyfish)
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Total number of polymer chains2
Total molecular weight69021.74
Authors
Mou, Y.,Mayo, S.L. (deposition date: 2013-10-26, release date: 2014-11-05, Last modification date: 2017-10-18)
Primary citation
Mou, Y.,Huang, P.S.,Thomas, L.M.,Mayo, S.L.
Using Molecular Dynamics Simulations as an Aid in the Prediction of Domain Swapping of Computationally Designed Protein Variants.
J.Mol.Biol., 427:2697-2706, 2015
PubMed: 26101839 (PDB entries with the same primary citation)
DOI: 10.1016/j.jmb.2015.06.006
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.3 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.24770.4%4.4%0.6%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload