Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7MHI
DownloadVisualize
BU of 7mhi by Molmil
Crystal Structure of SARS-CoV-2 Main Protease (Mpro) at 298 K
分子名称: 3C-like proteinase, DIMETHYL SULFOXIDE, ZINC ION
著者Ebrahim, A, Riley, B.T, Kumaran, D, Andi, B, Fuchs, M.R, McSweeney, S, Keedy, D.A.
登録日2021-04-15
公開日2021-05-12
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献The tem-per-ature-dependent conformational ensemble of SARS-CoV-2 main protease (M pro ).
Iucrj, 9, 2022
7MHH
DownloadVisualize
BU of 7mhh by Molmil
Crystal Structure of SARS-CoV-2 Main Protease (Mpro) at 277 K
分子名称: 3C-like proteinase, DIMETHYL SULFOXIDE, ZINC ION
著者Ebrahim, A, Riley, B.T, Kumaran, D, Andi, B, Fuchs, M.R, McSweeney, S, Keedy, D.A.
登録日2021-04-15
公開日2021-05-12
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.1908 Å)
主引用文献The tem-per-ature-dependent conformational ensemble of SARS-CoV-2 main protease (M pro ).
Iucrj, 9, 2022
7M2X
DownloadVisualize
BU of 7m2x by Molmil
Open conformation of the Yeast wild-type gamma-TuRC
分子名称: GUANOSINE-5'-DIPHOSPHATE, Spindle pole body component 110, Spindle pole body component SPC97, ...
著者Brilot, A.F, Lyon, A.S, Zelter, A, Viswanath, S, Maxwell, A, MacCoss, M.J, Muller, E.G, Sali, A, Davis, T.N, Agard, D.A.
登録日2021-03-17
公開日2021-05-12
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献CM1-driven assembly and activation of yeast gamma-tubulin small complex underlies microtubule nucleation.
Elife, 10, 2021
7MM1
DownloadVisualize
BU of 7mm1 by Molmil
PTP1B in complex with TCS401 by Native S-SAD at Room Temperature
分子名称: 2-(OXALYL-AMINO)-4,5,6,7-TETRAHYDRO-THIENO[2,3-C]PYRIDINE-3-CARBOXYLIC ACID, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Tyrosine-protein phosphatase non-receptor type 1
著者Greisman, J.B, Dalton, K.M, Hekstra, D.R.
登録日2021-04-29
公開日2021-05-12
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Native SAD phasing at room temperature.
Acta Crystallogr D Struct Biol, 78, 2022
7M2Z
DownloadVisualize
BU of 7m2z by Molmil
Monomeric single-particle reconstruction of the Yeast gamma-TuSC
分子名称: GUANOSINE-5'-DIPHOSPHATE, Spindle pole body component SPC97, Spindle pole body component SPC98, ...
著者Brilot, A.F, Lyon, A.S, Zelter, A, Viswanath, S, Maxwell, A, MacCoss, M.J, Muller, E.G, Sali, A, Davis, T.N, Agard, D.A.
登録日2021-03-17
公開日2021-05-12
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献CM1-driven assembly and activation of yeast gamma-tubulin small complex underlies microtubule nucleation.
Elife, 10, 2021
6QXP
DownloadVisualize
BU of 6qxp by Molmil
Protein peptide complex
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Leucine-rich repeat extensin-like protein 2, ...
著者Moussu, S, Caroline, C, Santos-Fernandez, G, Wehrle, S, Grossniklaus, U, Santiago, J.
登録日2019-03-07
公開日2020-03-25
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (3.201 Å)
主引用文献Structural basis for recognition of RALF peptides by LRX proteins during pollen tube growth.
Proc.Natl.Acad.Sci.USA, 117, 2020
2G4L
DownloadVisualize
BU of 2g4l by Molmil
Anomalous substructure of hydroxynitrile lyase
分子名称: (S)-acetone-cyanohydrin lyase, CHLORIDE ION, SULFATE ION
著者Mueller-Dieckmann, C, Weiss, M.S.
登録日2006-02-22
公開日2007-02-20
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献On the routine use of soft X-rays in macromolecular crystallography. Part IV. Efficient determination of anomalous substructures in biomacromolecules using longer X-ray wavelengths.
Acta Crystallogr.,Sect.D, 63, 2007
5LA7
DownloadVisualize
BU of 5la7 by Molmil
Crystal structure of human proheparanase, in complex with glucuronic acid configured aziridine probe JJB355
分子名称: (1~{S},2~{R},3~{S},4~{S},5~{S},6~{R})-2-(8-azidooctylamino)-3,4,5,6-tetrakis(oxidanyl)cyclohexane-1-carboxylic acid, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Wu, L, Jin, Y, Davies, G.J.
登録日2016-06-13
公開日2017-05-31
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Activity-based probes for functional interrogation of retaining beta-glucuronidases.
Nat. Chem. Biol., 13, 2017
5KWF
DownloadVisualize
BU of 5kwf by Molmil
Joint X-ray Neutron Structure of Cholesterol Oxidase
分子名称: Cholesterol oxidase, FLAVIN-ADENINE DINUCLEOTIDE
著者Golden, E, Vrielink, A, Meilleur, F, Blakeley, M.
登録日2016-07-18
公開日2017-02-01
最終更新日2024-03-06
実験手法NEUTRON DIFFRACTION (1.499 Å), X-RAY DIFFRACTION
主引用文献An extended N-H bond, driven by a conserved second-order interaction, orients the flavin N5 orbital in cholesterol oxidase.
Sci Rep, 7, 2017
6L5Z
DownloadVisualize
BU of 6l5z by Molmil
Crystal strucutre of AF9 YEATS domain in complex with a cyclopeptide inhibitor
分子名称: Protein AF-9, SC0-ALO-ALA-SC3-SC4-NH2
著者Li, Y, Chen, G, Li, H.
登録日2019-10-25
公開日2020-10-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献Selective Targeting of AF9 YEATS Domain by Cyclopeptide Inhibitors with Preorganized Conformation.
J.Am.Chem.Soc., 142, 2020
4V8C
DownloadVisualize
BU of 4v8c by Molmil
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).
分子名称: 16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
著者Jenner, L, Demeshkina, N, Yusupov, M, Yusupova, G.
登録日2011-12-07
公開日2014-07-09
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献A new understanding of the decoding principle on the ribosome.
Nature, 484, 2012
4V87
DownloadVisualize
BU of 4v87 by Molmil
Crystal structure analysis of ribosomal decoding.
分子名称: 16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
著者Demeshkina, N, Jenner, L, Yusupov, M, Yusupova, G.
登録日2011-09-20
公開日2014-07-09
最終更新日2014-12-10
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献A new understanding of the decoding principle on the ribosome.
Nature, 484, 2012
4V8I
DownloadVisualize
BU of 4v8i by Molmil
Crystal structure of YfiA bound to the 70S ribosome.
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S Ribosomal Protein S10, ...
著者Polikanov, Y.S, Blaha, G.M, Steitz, T.A.
登録日2011-12-12
公開日2014-07-09
最終更新日2014-12-10
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献How hibernation factors RMF, HPF, and YfiA turn off protein synthesis.
Science, 336, 2012
5DJ5
DownloadVisualize
BU of 5dj5 by Molmil
Crystal structure of rice DWARF14 in complex with synthetic strigolactone GR24
分子名称: (3E,3aR,8bS)-3-({[(2R)-4-methyl-5-oxo-2,5-dihydrofuran-2-yl]oxy}methylidene)-3,3a,4,8b-tetrahydro-2H-indeno[1,2-b]furan-2-one, Probable strigolactone esterase D14
著者Zhou, X.E, Zhao, L.-H, Yi, W, Wu, Z.-S, Liu, Y, Kang, Y, Hou, L, de Waal, P.W, Li, S, Jiang, Y, Melcher, K, Xu, H.E.
登録日2015-09-01
公開日2015-10-28
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Destabilization of strigolactone receptor DWARF14 by binding of ligand and E3-ligase signaling effector DWARF3.
Cell Res., 25, 2015
8RU1
DownloadVisualize
BU of 8ru1 by Molmil
Chromatin remodeling regulator CECR2 with in crystallo disulfide bond
分子名称: Chromatin remodeling regulator CECR2, GLYCEROL, SODIUM ION
著者Fairhead, M, Strain-Damerell, C, Ye, M, Mackinnon, S.R, Pinkas, D, MacLean, E.M, Koekemoer, L, Damerell, D, Krojer, T, Arrowsmith, C.H, Edwards, A, Bountra, C, Yue, W, Burgess-Brown, N, Marsden, B, von Delft, F, Structural Genomics Consortium (SGC)
登録日2024-01-29
公開日2024-03-06
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献A fast, parallel method for efficiently exploring crystallization behaviour of large numbers of protein variants
To Be Published
8RYS
DownloadVisualize
BU of 8rys by Molmil
Human IL-1beta, unliganded
分子名称: Interleukin-1 beta, SULFATE ION
著者Rondeau, J.-M, Lehmann, S.
登録日2024-02-09
公開日2024-03-06
最終更新日2024-06-05
実験手法X-RAY DIFFRACTION (1.16 Å)
主引用文献Ligandability Assessment of IL-1 beta by Integrated Hit Identification Approaches.
J.Med.Chem., 67, 2024
2FPW
DownloadVisualize
BU of 2fpw by Molmil
Crystal Structure of the N-terminal Domain of E.coli HisB- Phosphoaspartate intermediate.
分子名称: CALCIUM ION, Histidine biosynthesis bifunctional protein hisB, ZINC ION
著者Rangarajan, E.S, Cygler, M, Matte, A, Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)
登録日2006-01-17
公開日2006-09-05
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural snapshots of Escherichia coli histidinol phosphate phosphatase along the reaction pathway.
J.Biol.Chem., 281, 2006
5CSH
DownloadVisualize
BU of 5csh by Molmil
Crystal Structure of CK2alpha with Compound 4 bound
分子名称: 1-(2-chlorobiphenyl-4-yl)methanamine, ACETATE ION, ADENOSINE-5'-TRIPHOSPHATE, ...
著者Brear, P, De Fusco, C, Georgiou, K.H, Spring, D, Hyvonen, M.
登録日2015-07-23
公開日2016-07-27
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Specific inhibition of CK2 alpha from an anchor outside the active site.
Chem Sci, 7, 2016
8RC0
DownloadVisualize
BU of 8rc0 by Molmil
Structure of the human 20S U5 snRNP
分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, CD2 antigen cytoplasmic tail-binding protein 2, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Schneider, S, Galej, W.P.
登録日2023-12-05
公開日2024-03-27
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structure of the human 20S U5 snRNP.
Nat.Struct.Mol.Biol., 31, 2024
5D8P
DownloadVisualize
BU of 5d8p by Molmil
2.35A resolution structure of iron bound BfrB (wild-type, C2221 form) from Pseudomonas aeruginosa
分子名称: ACETATE ION, FE (II) ION, Ferroxidase, ...
著者Lovell, S, Battaile, K.P, Wang, Y, Yao, H, Rivera, M.
登録日2015-08-17
公開日2015-09-23
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Characterization of the Bacterioferritin/Bacterioferritin Associated Ferredoxin Protein-Protein Interaction in Solution and Determination of Binding Energy Hot Spots.
Biochemistry, 54, 2015
8RWU
DownloadVisualize
BU of 8rwu by Molmil
ACDC domain of the AP2-I transcription factor from Plasmodium vivax
分子名称: AP2 domain transcription factor AP2-I, putative
著者Nessler, S, Le Berre, M, Gallay Li de la Sierra, I.
登録日2024-02-05
公開日2024-03-06
最終更新日2024-04-17
実験手法X-RAY DIFFRACTION (3.152 Å)
主引用文献Structural characterization of the ACDC domain from ApiAP2 proteins of the malaria parasite.
Biorxiv, 2024
2FQZ
DownloadVisualize
BU of 2fqz by Molmil
Metal-depleted Ecl18kI in complex with uncleaved DNA
分子名称: DNA STRAND 1, DNA STRAND 2, R.Ecl18kI
著者Bochtler, M, Szczepanowski, R.H, Tamulaitis, G, Grazulis, S, Czapinska, H, Manakova, E, Siksnys, V.
登録日2006-01-18
公開日2006-06-20
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Nucleotide flips determine the specificity of the Ecl18kI restriction endonuclease
Embo J., 25, 2006
5D9D
DownloadVisualize
BU of 5d9d by Molmil
Luciferin-regenerating enzyme solved by SAD using synchrotron radiation at room temperature
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Luciferin regenerating enzyme, MAGNESIUM ION, ...
著者Yamashita, K, Pan, D, Okuda, T, Murai, T, Kodan, A, Yamaguchi, T, Gomi, K, Kajiyama, N, Kato, H, Ago, H, Yamamoto, M, Nakatsu, T.
登録日2015-08-18
公開日2015-09-23
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.701 Å)
主引用文献An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography.
Sci Rep, 5, 2015
2G76
DownloadVisualize
BU of 2g76 by Molmil
Crystal structure of human 3-phosphoglycerate dehydrogenase
分子名称: D-3-phosphoglycerate dehydrogenase, D-MALATE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Turnbull, A.P, Salah, E, Savitsky, P, Gileadi, O, von Delft, F, Edwards, A, Arrowsmith, C, Weigelt, J, Sundstrom, M, Oppermann, U, Structural Genomics Consortium (SGC)
登録日2006-02-27
公開日2006-03-21
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of human 3-phosphoglycerate dehydrogenase
To be Published
8RHN
DownloadVisualize
BU of 8rhn by Molmil
Structure of the 55LCC ATPase complex
分子名称: ATPase family gene 2 protein homolog A, ATPase family gene 2 protein homolog B, Cyclin-dependent kinase 2-interacting protein, ...
著者Foglizzo, M, Degtjarik, O, Zeqiraj, E.
登録日2023-12-15
公開日2024-03-27
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (4.5 Å)
主引用文献The SPATA5-SPATA5L1 ATPase complex directs replisome proteostasis to ensure genome integrity.
Cell, 187, 2024

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon