PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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4LTJ	Dehydration/Rehydration of a Nucleic Acid system containing a Polypyridyl Ruthenium Complex at 97% relative humidity (5/7) 分子名称: BARIUM ION, DNA, Ru(tap)2(dppz) complex 著者 Hall, J.P, Sanchez-Weatherby, J, Cardin, C.J. 登録日 2013-07-23 公開日 2014-09-24 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Controlled Dehydration of a Ruthenium Complex-DNA Crystal Induces Reversible DNA Kinking. J.Am.Chem.Soc., 136, 2014
1Q3V	Crystal structure of a wild-type Cre recombinase-loxP synapse: phosphotyrosine covalent intermediate 分子名称: Cre recombinase, IODIDE ION, MAGNESIUM ION, ... 著者 Ennifar, E, Meyer, J.E.W, Buchholz, F, Stewart, A.F, Suck, D. 登録日 2003-08-01 公開日 2003-09-16 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.91 Å) 主引用文献 Crystal structure of a wild-type Cre recombinase-loxP synapse reveals a novel spacer conformation suggesting an alternative mechanism for DNA cleavage activation Nucleic Acids Res., 31, 2003
1JE5	Crystal Structure of gp2.5, a Single-Stranded DNA Binding Protein Encoded by Bacteriophage T7 分子名称: CALCIUM ION, HELIX-DESTABILIZING PROTEIN 著者 Hollis, T, Stattel, J.M, Walther, D.S, Richardson, C.C, Ellenberger, T.E. 登録日 2001-06-15 公開日 2001-08-22 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structure of the gene 2.5 protein, a single-stranded DNA binding protein encoded by bacteriophage T7. Proc.Natl.Acad.Sci.USA, 98, 2001
2O8C	human MutSalpha (MSH2/MSH6) bound to ADP and an O6-methyl-guanine T mispair 分子名称: 5'-D(*CP*CP*TP*AP*GP*CP*GP*TP*GP*CP*GP*GP*TP*TP*C)-3', 5'-D(*GP*AP*AP*CP*CP*GP*CP*(6OG)P*CP*GP*CP*TP*AP*GP*G)-3', ADENOSINE-5'-DIPHOSPHATE, ... 著者 Warren, J.J, Pohlhaus, T.J, Changela, A, Modrich, P.L, Beese, L.S. 登録日 2006-12-12 公開日 2007-06-05 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3.37 Å) 主引用文献 Structure of the Human MutSalpha DNA Lesion Recognition Complex. Mol.Cell, 26, 2007
2OKV	c-Myc DNA Unwinding Element Binding Protein 分子名称: MAGNESIUM ION, Probable D-tyrosyl-tRNA(Tyr) deacylase 1 著者 Bae, B, Nair, S.K. 登録日 2007-01-17 公開日 2007-01-30 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure and Function of the c-myc DNA-unwinding Element-binding Protein DUE-B. J.Biol.Chem., 282, 2007
3N4N	Insights into the stabilizing contributions of a bicyclic cytosine analogue: crystal structures of DNA duplexes containing 7,8-dihydropyrido[2,3-d]pyrimidin-2-one 分子名称: 5'-D(*CP*GP*CP*GP*AP*A)-3', 5'-D(P*TP*TP*(B7C)P*GP*CP*G)-3' 著者 Takenaka, A, Juan, E.C.M, Shimizu, S. 登録日 2010-05-22 公開日 2010-08-11 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 Insights into the DNA stabilizing contributions of a bicyclic cytosine analogue: crystal structures of DNA duplexes containing 7,8-dihydropyrido [2,3-d]pyrimidin-2-one. Nucleic Acids Res., 2010
2O8E	human MutSalpha (MSH2/MSH6) bound to a G T mispair, with ADP bound to MSH2 only 分子名称: 5'-D(*CP*CP*TP*AP*GP*CP*CP*TP*GP*CP*GP*GP*TP*TP*C)-3', 5'-D(*GP*AP*AP*CP*CP*GP*CP*GP*GP*GP*CP*TP*AP*GP*G)-3', ADENOSINE-5'-DIPHOSPHATE, ... 著者 Warren, J.J, Pohlhaus, T.J, Changela, A, Modrich, P.L, Beese, L.S. 登録日 2006-12-12 公開日 2007-06-05 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Structure of the Human MutSalpha DNA Lesion Recognition Complex. Mol.Cell, 26, 2007
2O8B	human MutSalpha (MSH2/MSH6) bound to ADP and a G T mispair 分子名称: 5'-D(*CP*CP*TP*AP*GP*CP*GP*TP*GP*CP*GP*GP*TP*TP*C)-3', 5'-D(*GP*AP*AP*CP*CP*GP*CP*GP*CP*GP*CP*TP*AP*GP*G)-3', ADENOSINE-5'-DIPHOSPHATE, ... 著者 Warren, J.J, Pohlhaus, T.J, Changela, A, Modrich, P.L, Beese, L.S. 登録日 2006-12-12 公開日 2007-06-05 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 Structure of the Human MutSalpha DNA Lesion Recognition Complex. Mol.Cell, 26, 2007
4LTI	Dehydration/Rehydration of a Nucleic Acid system containing a Polypyridyl Ruthenium Complex at 74% relative humidity (4/7) 分子名称: BARIUM ION, CHLORIDE ION, DNA, ... 著者 Hall, J.P, Sanchez-Weatherby, J, Cardin, C.J. 登録日 2013-07-23 公開日 2014-09-24 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.41 Å) 主引用文献 Controlled Dehydration of a Ruthenium Complex-DNA Crystal Induces Reversible DNA Kinking. J.Am.Chem.Soc., 136, 2014
3N4O	Insights into the stabilizing contributions of a bicyclic cytosine analogue: crystal structures of DNA duplexes containing 7,8-dihydropyrido[2,3-d]pyrimidin-2-one 分子名称: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, 5'-D(*CP*GP*CP*GP*AP*AP*TP*(B7C)P*CP*GP*CP*G)-3' 著者 Takenaka, A, Juan, E.C.M, Shimizu, S. 登録日 2010-05-22 公開日 2010-08-11 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Insights into the DNA stabilizing contributions of a bicyclic cytosine analogue: crystal structures of DNA duplexes containing 7,8-dihydropyrido [2,3-d]pyrimidin-2-one. Nucleic Acids Res., 2010
1ZRE	4 crystal structures of CAP-DNA with all base-pair substitutions at position 6, CAP-[6G;17C]ICAP38 DNA 分子名称: 5'-D(*AP*TP*TP*TP*CP*GP*AP*AP*AP*AP*AP*TP*GP*GP*GP*AP*T)-3', 5'-D(*CP*TP*AP*GP*AP*TP*CP*CP*CP*AP*TP*TP*TP*TP*TP*CP*GP*AP*AP*AP*T)-3', ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, ... 著者 Berman, H.M, Napoli, A.A. 登録日 2005-05-19 公開日 2006-03-21 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps. J.Mol.Biol., 357, 2006
1ZRC	4 Crystal structures of CAP-DNA with all base-pair substitutions at position 6, CAP-ICAP38 DNA 分子名称: 5'-D(*AP*TP*TP*TP*CP*GP*AP*AP*AP*AP*AP*TP*GP*TP*GP*AP*T)-3', 5'-D(*CP*TP*AP*GP*AP*TP*CP*AP*CP*AP*TP*TP*TP*TP*TP*CP*GP*AP*AP*AP*T)-3', ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, ... 著者 Berman, H.M, Napoli, A.A. 登録日 2005-05-19 公開日 2006-03-21 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps. J.Mol.Biol., 357, 2006
1LRR	CRYSTAL STRUCTURE OF E. COLI SEQA COMPLEXED WITH HEMIMETHYLATED DNA 分子名称: 5'-D(*AP*GP*TP*CP*GP*(6MA)P*TP*CP*GP*GP*TP*G)-3', 5'-D(*CP*AP*CP*CP*GP*AP*TP*CP*GP*AP*CP*T)-3', SeqA protein 著者 Guarne, A, Zhao, Q, Guirlando, R, Yang, W. 登録日 2002-05-15 公開日 2002-12-11 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Insights into negative modulation of E. coli replication initiation from the structure of SeqA-hemimethylated DNA complex NAT.STRUCT.BIOL., 9, 2002
2O8D	human MutSalpha (MSH2/MSH6) bound to ADP and a G dU mispair 分子名称: 5'-D(*CP*CP*TP*AP*GP*CP*GP*(DU)P*GP*CP*GP*GP*TP*TP*C)-3', 5'-D(*GP*AP*AP*CP*CP*GP*CP*GP*CP*GP*CP*TP*AP*GP*G)-3', ADENOSINE-5'-DIPHOSPHATE, ... 著者 Warren, J.J, Pohlhaus, T.J, Changela, A, Modrich, P.L, Beese, L.S. 登録日 2006-12-12 公開日 2007-06-05 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structure of the Human MutSalpha DNA Lesion Recognition Complex. Mol.Cell, 26, 2007
1ZRF	4 crystal structures of CAP-DNA with all base-pair substitutions at position 6, CAP-[6C;17G]ICAP38 DNA 分子名称: 1,4-DIETHYLENE DIOXIDE, 5'-D(*AP*TP*TP*TP*CP*GP*AP*AP*AP*AP*AP*TP*GP*CP*GP*AP*T)-3', 5'-D(*CP*TP*AP*GP*AP*TP*CP*GP*CP*AP*TP*TP*TP*TP*TP*CP*GP*AP*AP*AP*T)-3', ... 著者 Berman, H.M, Napoli, A.A. 登録日 2005-05-19 公開日 2006-03-21 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps. J.Mol.Biol., 357, 2006
1ZRD	4 crystal structures of CAP-DNA with all base-pair substitutions at position 6, CAP-[6A;17T]ICAP38 DNA 分子名称: 5'-D(*AP*TP*TP*TP*CP*GP*AP*AP*AP*AP*AP*TP*GP*AP*GP*AP*T)-3', 5'-D(*CP*TP*AP*GP*AP*TP*CP*TP*CP*AP*TP*TP*TP*TP*TP*CP*GP*AP*AP*AP*T)-3', ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, ... 著者 Berman, H.M, Napoli, A.A. 登録日 2005-05-19 公開日 2006-03-21 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps. J.Mol.Biol., 357, 2006
3BM0	Structure of DNA Octamer G(dUSe)G(5-SedU)ACAC 分子名称: 5'-D(*GP*(2'-Se-U)P*GP*(5-Se-U)P*AP*CP*AP*C)-3' 著者 Jiang, J, SHeng, J, Hassan, A.E, Huang, Z. 登録日 2007-12-11 公開日 2008-06-10 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Synthesis and crystallographic analysis of 5-Se-thymidine DNAs. Org.Lett., 11, 2009
1LWV	Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-aminoguanine 分子名称: 5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 8-AMINOGUANINE, ... 著者 Fromme, J.C, Bruner, S.D, Yang, W, Karplus, M, Verdine, G.L. 登録日 2002-06-03 公開日 2003-02-25 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Product-Assisted Catalysis in Base Excision DNA Repair Nat.Struct.Biol., 10, 2003
1LWY	hOgg1 Borohydride-Trapped Intermediate without 8-oxoguanine 分子名称: 5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 8-OXOGUANINE DNA GLYCOSYLASE 著者 Fromme, J.C, Bruner, S.D, Yang, W, Karplus, M, Verdine, G.L. 登録日 2002-06-03 公開日 2003-02-25 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.01 Å) 主引用文献 Product-Assisted Catalysis in Base Excision DNA Repair Nat.Struct.Biol., 10, 2003
1NZB	Crystal structure of wild type Cre recombinase-loxP synapse 分子名称: Cre recombinase, IODIDE ION, MAGNESIUM ION, ... 著者 Ennifar, E, Meyer, J.E.W, Buchholz, F, Stewart, A.F, Suck, D. 登録日 2003-02-17 公開日 2003-09-16 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Crystal structure of a wild-type Cre recombinase-loxP synapse reveals a novel spacer conformation suggesting an alternative mechanism for DNA cleavage activation Nucleic Acids Res., 31, 2003
4LTL	Dehydration/Rehydration of a Nucleic Acid system containing a Polypyridyl Ruthenium Complex at 97% relative humidity (7/7) 分子名称: BARIUM ION, DNA, Ru(tap)2(dppz) complex 著者 Hall, J.P, Sanchez-Weatherby, J, Cardin, C.J. 登録日 2013-07-23 公開日 2014-09-24 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.07 Å) 主引用文献 Controlled Dehydration of a Ruthenium Complex-DNA Crystal Induces Reversible DNA Kinking. J.Am.Chem.Soc., 136, 2014
304D	SIDE-BY-SIDE BINDING OF DISTAMYCIN MOLECULES TO D(ICATATIC) IN THE MONOCLINIC FORM 分子名称: DISTAMYCIN A, DNA (5'-D(*IP*CP*AP*TP*AP*TP*IP*C)-3') 著者 Chen, X, Ramakrishnan, B, Sundaralingam, M. 登録日 1997-01-03 公開日 1997-09-25 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structures of the side-by-side binding of distamycin to AT-containing DNA octamers d(ICITACIC) and d(ICATATIC). J.Mol.Biol., 267, 1997
2A66	Human Liver Receptor Homologue DNA-Binding Domain (hLRH-1 DBD) in Complex with dsDNA from the hCYP7A1 Promoter 分子名称: 5'-D(*CP*TP*GP*GP*CP*CP*TP*TP*GP*AP*AP*C)-3', 5'-D(*GP*TP*TP*CP*AP*AP*GP*GP*CP*CP*AP*G)-3', ACETATE ION, ... 著者 Solomon, I.H, Hager, J.M, Safi, R, McDonnell, D.P, Redinbo, M.R, Ortlund, E.A. 登録日 2005-07-01 公開日 2005-12-06 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal Structure of the Human LRH-1 DBD-DNA Complex Reveals Ftz-F1 Domain Positioning is Required for Receptor Activity. J.Mol.Biol., 354, 2005
1LWW	Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-bromoguanine 分子名称: 5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 8-BROMOGUANINE, ... 著者 Fromme, J.C, Bruner, S.D, Yang, W, Karplus, M, Verdine, G.L. 登録日 2002-06-03 公開日 2003-02-25 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Product-Assisted Catalysis in Base Excision DNA Repair Nat.Struct.Biol., 10, 2003
3EY0	A new form of DNA-drug interaction in the minor groove of a coiled coil 分子名称: 1,5-BIS(4-AMIDINOPHENOXY)PENTANE, 5'-D(*DAP*DTP*DAP*DTP*DAP*DTP*DAP*DTP*DAP*DT)-3', MAGNESIUM ION 著者 Pous, J, Moreno, T, Subirana, J.A, Campos, J.L. 登録日 2008-10-17 公開日 2009-10-27 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.52 Å) 主引用文献 Coiled-coil conformation of a pentamidine-DNA complex Acta Crystallogr.,Sect.D, 66, 2010

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