PDB: 19228 件ウェブページステータス検索Chemie searchBIRD

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4RAA	Crystal structure of a Putative exported protein (BF0058) from Bacteroides fragilis NCTC 9343 at 2.60 A resolution 分子名称: PHOSPHATE ION, Putative exported protein 著者 Joint Center for Structural Genomics (JCSG) 登録日 2014-09-09 公開日 2014-10-15 最終更新日 2023-02-01 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal structure of a Putative exported protein (BF0058) from Bacteroides fragilis NCTC 9343 at 2.60 A resolution To be published
6OZZ	N terminally deleted GapR crystal structure from C. crescentus 分子名称: UPF0335 protein CC_3319 著者 Tarry, M, Harmel, C, Taylor, J.A, Marczynski, G.T, Schmeing, T.M. 登録日 2019-05-16 公開日 2019-11-27 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (3.304 Å) 主引用文献 Structures of GapR reveal a central channel which could accommodate B-DNA. Sci Rep, 9, 2019
4RBO	Crystal structure of a Nanog homeobox (NANOG) from Homo sapiens at 3.30 A resolution 分子名称: 5'-D(*CP*TP*TP*GP*AP*AP*TP*GP*GP*GP*CP*C)-3', 5'-D(*GP*GP*CP*CP*CP*AP*TP*TP*CP*AP*AP*G)-3', Putative homeobox protein NANOGP8 著者 Joint Center for Structural Genomics (JCSG), Partnership for Stem Cell Biology (STEMCELL) 登録日 2014-09-12 公開日 2014-10-01 最終更新日 2023-02-01 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Structure-based discovery of NANOG variant with enhanced properties to promote self-renewal and reprogramming of pluripotent stem cells. Proc.Natl.Acad.Sci.USA, 112, 2015
6R7N	Structural basis of Cullin-2 RING E3 ligase regulation by the COP9 signalosome 分子名称: COP9 signalosome complex subunit 1, COP9 signalosome complex subunit 2, COP9 signalosome complex subunit 3, ... 著者 Faull, S.V, Lau, A.M.C, Martens, C, Ahdash, Z, Yebenes, H, Schmidt, C, Beuron, F, Cronin, N.B, Morris, E.P, Politis, A. 登録日 2019-03-29 公開日 2019-08-28 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (6.5 Å) 主引用文献 Structural basis of Cullin 2 RING E3 ligase regulation by the COP9 signalosome. Nat Commun, 10, 2019
6R91	Cryo-EM structure of NCP_THF2(-3)-UV-DDB 分子名称: DNA damage-binding protein 1, DNA damage-binding protein 2, Histone H2A type 1-B/E, ... 著者 Matsumoto, S, Cavadini, S, Bunker, R.D, Thoma, N.H. 登録日 2019-04-02 公開日 2019-06-12 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 DNA damage detection in nucleosomes involves DNA register shifting. Nature, 571, 2019
4V55	Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF). 分子名称: (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDR OXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL, 16S rRNA, 23S rRNA, ... 著者 Borovinskaya, M.A, Pai, R.D, Zhang, W, Schuwirth, B.-S, Holton, J.M, Hirokawa, G, Kaji, H, Kaji, A, Cate, J.H.D. 登録日 2007-06-17 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (4 Å) 主引用文献 Structural basis for aminoglycoside inhibition of bacterial ribosome recycling. Nat.Struct.Mol.Biol., 14, 2007
6P0C	Human DNA Ligase 1 Bound to an Adenylated, hydroxyl terminated DNA nick in EDTA 分子名称: ADENOSINE MONOPHOSPHATE, DI(HYDROXYETHYL)ETHER, DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*C)-3'), ... 著者 Schellenberg, M.J, Tumbale, P.S, Riccio, A.A, Williams, R.S. 登録日 2019-05-16 公開日 2019-12-11 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Two-tiered enforcement of high-fidelity DNA ligation. Nat Commun, 10, 2019
6P2H	Structural basis for 2'-deoxyguanosine recognition by the 2'-dG-II class of riboswitches 分子名称: 2'-DEOXY-GUANOSINE, COBALT HEXAMMINE(III), MAGNESIUM ION, ... 著者 Matyjasik, M.M, Batey, R.T. 登録日 2019-05-21 公開日 2019-10-23 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.803 Å) 主引用文献 Structural basis for 2'-deoxyguanosine recognition by the 2'-dG-II class of riboswitches. Nucleic Acids Res., 47, 2019
6P3T	Crystal structure of Eis from Mycobacterium tuberculosis in complex with inhibitor SGT449 分子名称: AMMONIUM ION, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ... 著者 Punetha, A, Garneau-Tsodikova, S, Tsodikov, O.V. 登録日 2019-05-24 公開日 2019-09-04 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Probing the Robustness of Inhibitors of Tuberculosis Aminoglycoside Resistance Enzyme Eis by Mutagenesis. Acs Infect Dis., 5, 2019
4QU6	Crystal structure of a G-rich RNA sequence binding factor 1 (GRSF1) from Homo sapiens at 1.75 A resolution 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ... 著者 Joint Center for Structural Genomics (JCSG), Partnership for T-Cell Biology (TCELL) 登録日 2014-07-10 公開日 2014-08-13 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Crystal structure of a G-rich RNA sequence binding factor 1 (GRSF1) from Homo sapiens at 1.75 A resolution To be published
4W4Z	Structure of the EphA4 LBD in complex with peptide 分子名称: APY-bAla8.am peptide, Ephrin type-A receptor 4, GLYCEROL, ... 著者 Lechtenberg, B.C, Mace, P.D, Riedl, S.J. 登録日 2014-08-15 公開日 2014-10-08 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (2.41 Å) 主引用文献 Development and Structural Analysis of a Nanomolar Cyclic Peptide Antagonist for the EphA4 Receptor. Acs Chem.Biol., 9, 2014
4R93	BACE-1 in complex with (R)-4-(2-cyclohexylethyl)-1-methyl-5-oxo-4-(((1S,3R)-3-(3-phenylureido)cyclohexyl)methyl)imidazolidin-2-iminium 分子名称: 1-[(1R,3S)-3-{[(2E,4R)-4-(2-cyclohexylethyl)-2-imino-1-methyl-5-oxoimidazolidin-4-yl]methyl}cyclohexyl]-3-phenylurea, Beta-secretase 1, L(+)-TARTARIC ACID 著者 Orth, P, Strickland, C, Caldwell, J.P. 登録日 2014-09-03 公開日 2014-11-05 最終更新日 2014-12-17 実験手法 X-RAY DIFFRACTION (1.71 Å) 主引用文献 Discovery of potent iminoheterocycle BACE1 inhibitors. Bioorg.Med.Chem.Lett., 24, 2014
4R4V	Crystal structure of the VS ribozyme - G638A mutant 分子名称: MAGNESIUM ION, POTASSIUM ION, VS ribozyme RNA 著者 Piccirilli, J.A, Suslov, N.B, Dasgupta, S, Huang, H, Lilley, D.M.J, Rice, P.A. 登録日 2014-08-19 公開日 2015-09-30 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.07 Å) 主引用文献 Crystal structure of the Varkud satellite ribozyme. Nat.Chem.Biol., 11, 2015
4UYA	Structure of MLK4 kinase domain with ATPgammaS 分子名称: MAGNESIUM ION, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE MLK4, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER 著者 Read, J.A, Brassington, C, Pollard, H.K, Phillips, C, Green, I, Overmann, R, Collier, M. 登録日 2014-08-29 公開日 2015-09-30 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Recurrent Mlk4 Loss-of-Function Mutations Suppress Jnk Signaling to Promote Colon Tumorigenesis. Cancer Res., 76, 2016
6R8Y	Cryo-EM structure of NCP-6-4PP(-1)-UV-DDB 分子名称: DNA damage-binding protein 1, DNA damage-binding protein 2, Histone H2A type 1-B/E, ... 著者 Matsumoto, S, Cavadini, S, Bunker, R.D, Thoma, N.H. 登録日 2019-04-02 公開日 2019-06-12 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 DNA damage detection in nucleosomes involves DNA register shifting. Nature, 571, 2019
6PGS	Crystal structure of bovine opsin with geraniol bound 分子名称: G alpha CT2 peptide, Geraniol, PALMITIC ACID, ... 著者 Eger, B.T, Morizumi, T, Ernst, O.P. 登録日 2019-06-24 公開日 2020-07-01 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.905 Å) 主引用文献 Odorant-binding site in visual opsin To Be Published
6PH7	Crystal structure of bovine opsin with nerol bound 分子名称: (2Z)-3,7-dimethylocta-2,6-dien-1-ol, G protein CT2 peptide, PALMITIC ACID, ... 著者 Eger, B.T, Morizumi, T, Ernst, O.P. 登録日 2019-06-25 公開日 2020-07-01 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (2.902 Å) 主引用文献 Odorant-binding site in visual opsin To Be Published
4V1B	Structure of a novel carbohydrate binding module from glycoside hydrolase family 5 glucanase from Ruminococcus flavefaciens FD-1 collected at the Zn edge 分子名称: CARBOHYDRATE BINDING MODULE 著者 Venditto, I, Centeno, M.S.J, Ferreira, L.M.A, Fontes, C.M.G.A, Najmudin, S. 登録日 2014-09-25 公開日 2016-01-20 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.69 Å) 主引用文献 Complexity of the Ruminococcus Flavefaciens Cellulosome Reflects an Expansion in Glycan Recognition. Proc.Natl.Acad.Sci.USA, 113, 2016
4QUV	Structure of an integral membrane delta(14)-sterol reductase 分子名称: Delta(14)-sterol reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE 著者 Li, X, Blobel, G. 登録日 2014-07-12 公開日 2014-10-08 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.743 Å) 主引用文献 Structure of an integral membrane sterol reductase from Methylomicrobium alcaliphilum. Nature, 517, 2015
6P09	Human DNA Ligase 1 Bound to an Adenylated, dideoxy Terminated DNA nick with 200 mM Mg2+ 分子名称: ADENOSINE MONOPHOSPHATE, DI(HYDROXYETHYL)ETHER, DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*C)-3'), ... 著者 Schellenberg, M.J, Williams, R.S, Tumbale, P.S, Riccio, A.A. 登録日 2019-05-16 公開日 2019-12-11 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.052 Å) 主引用文献 Two-tiered enforcement of high-fidelity DNA ligation. Nat Commun, 10, 2019
4V17	Structure of a novel carbohydrate binding module from glycoside hydrolase family 5 glucanase from Ruminococcus flavefaciens FD-1 分子名称: CARBOHYDRATE BINDING MODULE 著者 Venditto, I, Centeno, M.S.J, Ferreira, L.M.A, Fontes, C.M.G.A, Najmudin, S. 登録日 2014-09-25 公開日 2016-01-20 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Complexity of the Ruminococcus Flavefaciens Cellulosome Reflects an Expansion in Glycan Recognition. Proc.Natl.Acad.Sci.USA, 113, 2016
6RFQ	Cryo-EM structure of a respiratory complex I assembly intermediate with NDUFAF2 分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Acyl carrier protein ACPM1 of NADH:Ubiquinone Oxidoreductase (Complex I), ... 著者 Parey, K, Vonck, J. 登録日 2019-04-16 公開日 2019-12-11 最終更新日 2024-10-16 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 High-resolution cryo-EM structures of respiratory complex I: Mechanism, assembly, and disease. Sci Adv, 5, 2019
4R1K	Crystal structure of a NTF2-like protein (EUBSIR_01394) from Eubacterium siraeum DSM 15702 at 2.56 A resolution 分子名称: Uncharacterized protein 著者 Joint Center for Structural Genomics (JCSG) 登録日 2014-08-06 公開日 2014-10-01 最終更新日 2023-02-01 実験手法 X-RAY DIFFRACTION (2.56 Å) 主引用文献 Crystal structure of a hypothetical protein (EUBSIR_01394) from Eubacterium siraeum DSM 15702 at 2.56 A resolution To be published
4V3X	Structure of rat neuronal nitric oxide synthase heme domain in complex with N-2-(2-(1H-imidazol-1-yl)pyrimidin-4-yl)ethyl-3-(3- fluorophenyl)propan-1-amine 分子名称: 3-(3-fluorophenyl)-N-{2-[2-(1H-imidazol-1-yl)pyrimidin-4-yl]ethyl}propan-1-amine, 5,6,7,8-TETRAHYDROBIOPTERIN, ACETATE ION, ... 著者 Li, H, Poulos, T.L. 登録日 2014-10-20 公開日 2014-12-24 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.99 Å) 主引用文献 Novel 2,4-Disubstituted Pyrimidines as Potent, Selective, and Cell-Permeable Inhibitors of Neuronal Nitric Oxide Synthase. J.Med.Chem., 58, 2015
6P8H	Crystal structure of CDK4 in complex with CyclinD1 and P21 分子名称: Cyclin-dependent kinase 4, Cyclin-dependent kinase inhibitor 1, G1/S-specific cyclin-D1 著者 Guiley, K.Z, Stevenson, J.W, Lou, K, Barkovich, K.J, Bunch, K, Tripathi, S.M, Shokat, K.M, Rubin, S.M. 登録日 2019-06-07 公開日 2019-12-25 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.19 Å) 主引用文献 p27 allosterically activates cyclin-dependent kinase 4 and antagonizes palbociclib inhibition. Science, 366, 2019

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