PDB: 66478 件ウェブページステータス検索Chemie searchBIRD

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6U9L	Imidazole-triggered RAS-specific subtilisin SUBT_BACAM 分子名称: GLYCEROL, POTASSIUM ION, SUBTILISIN BPN', ... 著者 Toth, E.A, Bryan, P.N, Orban, J. 登録日 2019-09-09 公開日 2020-09-16 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Engineering subtilisin proteases that specifically degrade active RAS. Commun Biol, 4, 2021
6P1M	Binary complex of human DNA Polymerase Mu with 1-nt gapped substrate containing template 8OG 分子名称: 1,2-ETHANEDIOL, BROMIDE ION, CARBON DIOXIDE, ... 著者 Kaminski, A.M, Pedersen, L.C, Bebenek, K, Chiruvella, K.K, Ramsden, D.A, Kunkel, T.A. 登録日 2019-05-20 公開日 2019-09-04 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Unexpected behavior of DNA polymerase Mu opposite template 8-oxo-7,8-dihydro-2'-guanosine. Nucleic Acids Res., 47, 2019
6P1Q	Post-catalytic nicked complex of human DNA Polymerase Mu with 1-nt gapped substrate containing template 8OG and newly incorporated dCMP 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, DNA (5'-D(*CP*GP*GP*CP*(8OG)P*TP*AP*CP*G)-3'), ... 著者 Pedersen, L.C, Kaminski, A.M, Bebenek, K, Chiruvella, K.K, Ramsden, D.A, Kunkel, T.A. 登録日 2019-05-20 公開日 2019-09-04 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Unexpected behavior of DNA polymerase Mu opposite template 8-oxo-7,8-dihydro-2'-guanosine. Nucleic Acids Res., 47, 2019
6P1U	Post-catalytic nicked complex of human DNA Polymerase Mu with 1-nt gapped substrate containing template 8OG and newly incorporated CMP 分子名称: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, ... 著者 Kaminski, A.M, Pedersen, L.C, Bebenek, K, Chiruvella, K.K, Ramsden, D.A, Kunkel, T.A. 登録日 2019-05-20 公開日 2019-09-04 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Unexpected behavior of DNA polymerase Mu opposite template 8-oxo-7,8-dihydro-2'-guanosine. Nucleic Acids Res., 47, 2019
6V3G	Cryo-EM structure of Ca2+-free hsSlo1 channel 分子名称: Calcium-activated potassium channel subunit alpha-1 著者 Tao, X, MacKinnon, R. 登録日 2019-11-25 公開日 2019-12-25 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Molecular structures of the human Slo1 K + channel in complex with beta 4. Elife, 8, 2019
6P1R	Pre-catalytic ternary complex of human DNA Polymerase Mu with 1-nt gapped substrate containing template 8OG and bound incoming AMPNPP 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, CHLORIDE ION, ... 著者 Kaminski, A.M, Pedersen, L.C, Bebenek, K, Chiruvella, K.K, Ramsden, D.A, Kunkel, T.A. 登録日 2019-05-20 公開日 2019-09-04 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.701 Å) 主引用文献 Unexpected behavior of DNA polymerase Mu opposite template 8-oxo-7,8-dihydro-2'-guanosine. Nucleic Acids Res., 47, 2019
4Q4N	Structure of the Resuscitation Promoting Factor Interacting protein RipA mutated at H432 分子名称: Peptidoglycan endopeptidase RipA 著者 Squeglia, F, Ruggiero, A, Romano, M, Vitagliano, L, Berisio, R. 登録日 2014-04-15 公開日 2014-09-10 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.38 Å) 主引用文献 Mutational and structural study of RipA, a key enzyme in Mycobacterium tuberculosis cell division: evidence for the L-to-D inversion of configuration of the catalytic cysteine. Acta Crystallogr.,Sect.D, 70, 2014
6PH5	Binary product complex crystal structure of DNA polymerase Beta with an extra-helical template base 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*GP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*C)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... 著者 Batra, V.K, Wilson, S.H. 登録日 2019-06-25 公開日 2019-12-11 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.602 Å) 主引用文献 DNA polymerase beta nucleotide-stabilized template misalignment fidelity depends on local sequence context. J.Biol.Chem., 295, 2020
6PA5	ECAII(T89V,K162T) MUTANT IN COMPLEX WITH L-ASN AT PH 8.3 IN SPACE GROUP P2(1) 分子名称: ASPARAGINE, GLYCEROL, IMIDAZOLE, ... 著者 Lubkowski, J, Wlodawer, A. 登録日 2019-06-11 公開日 2019-09-04 最終更新日 2019-10-02 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Geometric considerations support the double-displacement catalytic mechanism of l-asparaginase. Protein Sci., 28, 2019
4QJ2	Crystal structure of inactive HIV-1 protease variant (I50V/A71V) in complex with WT p1-p6 substrate 分子名称: GLYCEROL, PHOSPHATE ION, Protease, ... 著者 Lin, K.H, Schiffer, C.A. 登録日 2014-06-03 公開日 2014-10-29 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.13 Å) 主引用文献 Structural basis and distal effects of Gag substrate coevolution in drug resistance to HIV-1 protease. Proc.Natl.Acad.Sci.USA, 111, 2014
6PA2	E. coli L-asparaginase II mutant (K162M) in complex with L-Asp at pH 5.6 分子名称: ASPARTIC ACID, GLYCEROL, L-asparaginase 2 著者 Lubkowski, J, Wlodawer, A. 登録日 2019-06-11 公開日 2019-09-04 最終更新日 2019-10-02 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Geometric considerations support the double-displacement catalytic mechanism of l-asparaginase. Protein Sci., 28, 2019
4P8E	Structure of ribB complexed with substrate (Ru5P) and metal ions 分子名称: 1,2-ETHANEDIOL, 3,4-dihydroxy-2-butanone 4-phosphate synthase, RIBULOSE-5-PHOSPHATE, ... 著者 Islam, Z, Kumar, A, Singh, S, Salmon, L, Karthikeyan, S. 登録日 2014-03-31 公開日 2015-03-25 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 Structural Basis for Competitive Inhibition of 3,4-Dihydroxy-2-butanone-4-phosphate Synthase from Vibrio cholerae. J.Biol.Chem., 290, 2015
6V2A	Complex of double mutant (T89V,K162T) of E. coli L-asparaginase II with L-Asn 分子名称: ASPARAGINE, L-asparaginase 2 著者 Lubkowski, J, Wlodawer, A. 登録日 2019-11-22 公開日 2020-05-20 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Mechanism of Catalysis by l-Asparaginase. Biochemistry, 59, 2020
6V23	Ligand-free L-aspraginase II from E. coli (EcAII) 分子名称: L-asparaginase 2 著者 Lubkowski, J, Wlodawer, A. 登録日 2019-11-22 公開日 2020-05-20 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Mechanism of Catalysis by l-Asparaginase. Biochemistry, 59, 2020
4ODS	Unliganded Fab structure of lipid A-specific antibody S55-3 分子名称: S55-3 Fab (IgG2b) heavy chain 著者 Haji-Ghassemi, O, Evans, S.V. 登録日 2014-01-10 公開日 2015-07-01 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 Structural Basis for Antibody Recognition of Lipid A: INSIGHTS TO POLYSPECIFICITY TOWARD SINGLE-STRANDED DNA. J.Biol.Chem., 290, 2015
6V28	Complex of double mutant (T89V,K162T) of E. coli L-asparaginase II with L-Asp 分子名称: GLYCEROL, IMIDAZOLE, L-asparaginase 2 著者 Lubkowski, J, Wlodawer, A. 登録日 2019-11-22 公開日 2020-05-20 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Mechanism of Catalysis by l-Asparaginase. Biochemistry, 59, 2020
4R55	The crystal structure of a Cren7 mutant protein GR and dsDNA complex 分子名称: Chromatin protein Cren7, DNA (5'-D(*GP*TP*GP*AP*TP*CP*AP*C)-3') 著者 Zhang, Z.F, Gong, Y, Chen, Y.Y, Li, H.B, Huang, L. 登録日 2014-08-20 公開日 2015-08-05 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Insights into the interaction between Cren7 and DNA: the role of loop beta 3-beta 4 Extremophiles, 19, 2015
4R58	Crystal structure of computational designed leucine rich repeats DLRR_A in space group P21 分子名称: Leucine Rich Repeat protein 著者 Shen, B.W, Stoddard, B.L. 登録日 2014-08-20 公開日 2015-01-14 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Control of repeat-protein curvature by computational protein design. Nat.Struct.Mol.Biol., 22, 2015
4R5D	Crystal structure of computational designed leucine rich repeats DLRR_G3 in space group F222 分子名称: 1,2-ETHANEDIOL, Leucine rich repeat protein, SULFATE ION 著者 Shen, B.W, Stoddard, B.L. 登録日 2014-08-21 公開日 2015-01-07 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.53 Å) 主引用文献 Control of repeat-protein curvature by computational protein design. Nat.Struct.Mol.Biol., 22, 2015
8DJF	Crystal structure of RPA3624, a beta-propeller lactonase from Rhodopseudomonas palustris, with active-site bound tetrahedral intermediate 分子名称: (5S)-5-methyloxolane-2,2-diol, CALCIUM ION, Gluconolactonase, ... 著者 Bingman, C.A, Hall, B.W, Smith, R.W, Fox, B.G, Donohue, T.J. 登録日 2022-06-30 公開日 2023-01-11 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 A broad specificity beta-propeller enzyme from Rhodopseudomonas palustris that hydrolyzes many lactones including gamma-valerolactone. J.Biol.Chem., 299, 2022
8DK0	Crystal structure of RPA3624, a beta-propeller lactonase from Rhodopseudomonas palustris, with active-site bound (S)gamma-valerolactone 分子名称: CALCIUM ION, Gluconolactonase, SODIUM ION, ... 著者 Bingman, C.A, Hall, B.W, Smith, R.W, Fox, B.G, Donohue, T.J. 登録日 2022-07-01 公開日 2023-01-11 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 A broad specificity beta-propeller enzyme from Rhodopseudomonas palustris that hydrolyzes many lactones including gamma-valerolactone. J.Biol.Chem., 299, 2022
8DJZ	Crystal structure of RPA3624, a beta-propeller lactonase from Rhodopseudomonas palustris, with active-site bound product 分子名称: (4R)-4-hydroxypentanoic acid, CALCIUM ION, Gluconolactonase, ... 著者 Bingman, C.A, Hall, B.W, Smith, R.W, Fox, B.G, Donohue, T.J. 登録日 2022-07-01 公開日 2023-01-11 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 A broad specificity beta-propeller enzyme from Rhodopseudomonas palustris that hydrolyzes many lactones including gamma-valerolactone. J.Biol.Chem., 299, 2022
6V27	Complex of double mutant (T89V,K162T) of E. coli L-asparaginase II with L-Asp 分子名称: L-asparaginase 2 著者 Lubkowski, J, Wlodawer, A. 登録日 2019-11-22 公開日 2020-05-20 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Mechanism of Catalysis by l-Asparaginase. Biochemistry, 59, 2020
6V38	Cryo-EM structure of Ca2+-bound hsSlo1 channel 分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, CALCIUM ION, CHOLESTEROL, ... 著者 Tao, X, MacKinnon, R. 登録日 2019-11-25 公開日 2019-12-25 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Molecular structures of the human Slo1 K + channel in complex with beta 4. Elife, 8, 2019
6V26	Complex of mutant (K162M) of E. coli L-asparaginase II with L-Asp 分子名称: ASPARTIC ACID, L-asparaginase 2 著者 Lubkowski, J, Wlodawer, A. 登録日 2019-11-22 公開日 2020-05-20 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Mechanism of Catalysis by l-Asparaginase. Biochemistry, 59, 2020

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