PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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1J5N	Solution Structure of the Non-Sequence-Specific HMGB protein NHP6A in complex with SRY DNA 分子名称: 5'-D(*CP*TP*GP*AP*AP*CP*AP*AP*TP*CP*AP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*TP*GP*AP*TP*TP*GP*TP*TP*CP*AP*G)-3', Nonhistone chromosomal protein 6A 著者 Masse, J.E, Wong, B, Yen, Y.-M, Allain, F.H.-T, Johnson, R.C, Feigon, J. 登録日 2002-05-15 公開日 2002-10-16 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 The S. cerevisiae architectural HMGB protein NHP6A complexed with DNA: DNA and protein conformational changes upon binding J.Mol.Biol., 323, 2002
1BIA	THE E. COLI BIOTIN HOLOENZYME SYNTHETASE(SLASH)BIO REPRESSOR CRYSTAL STRUCTURE DELINEATES THE BIOTIN AND DNA-BINDING DOMAINS 分子名称: BirA BIFUNCTIONAL PROTEIN 著者 Wilson, K.P, Shewchuk, L.M, Matthews, B.W. 登録日 1992-07-06 公開日 1993-10-31 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Escherichia coli biotin holoenzyme synthetase/bio repressor crystal structure delineates the biotin- and DNA-binding domains. Proc.Natl.Acad.Sci.USA, 89, 1992
8KD2	Rpd3S in complex with 187bp nucleosome 分子名称: 187bp DNA, Chromatin modification-related protein EAF3, Histone H2A, ... 著者 Dong, S, Li, H, Wang, M, Rasheed, N, Zou, B, Gao, X, Guan, J, Li, W, Zhang, J, Wang, C, Zhou, N, Shi, X, Li, M, Zhou, M, Huang, J, Li, H, Zhang, Y, Wong, K.H, Zhang, X, Chao, W.C.H, He, J. 登録日 2023-08-09 公開日 2023-09-13 最終更新日 2023-10-11 実験手法 ELECTRON MICROSCOPY (3.02 Å) 主引用文献 Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex. Cell Res., 33, 2023
1G4D	NMR STRUCTURE OF THE MU BACTERIOPHAGE REPRESSOR DNA-BINDING DOMAIN/DNA COMPLEX 分子名称: 5'-D(P*CP*AP*GP*AP*TP*TP*AP*CP*TP*GP*AP*AP*AP*AP*GP*G)-3', 5'-D(P*CP*CP*TP*TP*TP*TP*CP*AP*GP*TP*AP*AP*TP*CP*TP*G)-3', REPRESSOR PROTEIN C 著者 Wojciak, J.M, Iwahara, J, Clubb, R.T. 登録日 2000-10-26 公開日 2000-11-08 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The Mu repressor-DNA complex contains an immobilized 'wing' within the minor groove. Nat.Struct.Biol., 8, 2001
1GXP	PhoB effector domain in complex with pho box DNA. 分子名称: 5'-D(*CP*CP*CP*GP*TP*GP*AP*CP*AP*AP* CP*TP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*T)-3', 5'-D(*GP*AP*GP*CP*TP*GP*TP*CP*AP*TP* AP*AP*AP*GP*TP*TP*GP*TP*CP*AP*CP*GP*G)-3', PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN 著者 Blanco, A.G, Sola, M, Gomis-Ruth, F.X, Coll, M. 登録日 2002-04-08 公開日 2002-04-29 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Tandem DNA Recognition by Two-Component Signal Transduction Transcriptional Activator Phob Structure, 10, 2002
2X6V	Crystal structure of human TBX5 in the DNA-bound and DNA-free form 分子名称: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, 5'-D(*TP*AP*AP*GP*GP*TP*GP*TP*GP*AP*GP)-3', 5'-D(*TP*CP*TP*CP*AP*CP*AP*CP*CP*TP*TP)-3', ... 著者 Ptchelkine, D, Stirnimann, C.U, Grimm, C, Mueller, C.W. 登録日 2010-02-22 公開日 2010-04-28 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural Basis of Tbx5-DNA Recognition: The T-Box Domain in its DNA-Bound and -Unbound Form. J.Mol.Biol., 400, 2010
6LTU	Crystal structure of Cas12i2 ternary complex with double Mg2+ bound in catalytic pocket 分子名称: 1,2-ETHANEDIOL, Cas12i2, DNA (35-MER), ... 著者 Huang, X, Sun, W, Cheng, Z, Chen, M, Li, X, Wang, J, Sheng, G, Gong, W, Wang, Y. 登録日 2020-01-23 公開日 2020-10-28 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.57 Å) 主引用文献 Structural basis for two metal-ion catalysis of DNA cleavage by Cas12i2. Nat Commun, 11, 2020
6LTR	Crystal structure of Cas12i2 ternary complex with single Mg2+ bound in catalytic pocket 分子名称: 1,2-ETHANEDIOL, Cas12i2, DNA (35-MER), ... 著者 Huang, X, Sun, W, Cheng, Z, Chen, M, Li, X, Wang, J, Sheng, G, Gong, W, Wang, Y. 登録日 2020-01-23 公開日 2020-10-28 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.51 Å) 主引用文献 Structural basis for two metal-ion catalysis of DNA cleavage by Cas12i2. Nat Commun, 11, 2020
5MRG	Solution structure of TDP-43 (residues 1-102) 分子名称: TAR DNA-binding protein 43 著者 Mompean, M, Romano, V, Pantoja-Uceda, D, Stuani, C, Baralle, F.E, Laurents, D.V. 登録日 2016-12-22 公開日 2017-06-07 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Point mutations in the N-terminal domain of transactive response DNA-binding protein 43 kDa (TDP-43) compromise its stability, dimerization, and functions. J. Biol. Chem., 292, 2017
1RUO	CATABOLITE GENE ACTIVATOR PROTEIN (CAP) MUTANT/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE 分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, DNA (5'-D(*CP*TP*AP*GP*AP*TP*CP*AP*CP*AP*TP*TP*TP*TP*TP*CP*G )-3'), DNA (5'-D(*GP*CP*GP*AP*AP*AP*AP*AP*TP*GP*TP*GP*AP*T)-3'), ... 著者 Parkinson, G.N, Ebright, R.H, Berman, H.M. 登録日 1996-05-26 公開日 1997-01-10 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Aromatic hydrogen bond in sequence-specific protein DNA recognition. Nat.Struct.Biol., 3, 1996
6MJ5	Crystal structure of Tdp1 catalytic domain in complex with compound XZ519 分子名称: 1,2-ETHANEDIOL, 4-hydroxy-8-nitroquinoline-3-carboxylic acid, Tyrosyl-DNA phosphodiesterase 1 著者 Lountos, G.T, Zhao, X.Z, Kiselev, E, Tropea, J.E, Needle, D, Burke Jr, T.R, Pommier, Y, Waugh, D.S. 登録日 2018-09-20 公開日 2019-07-03 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.853 Å) 主引用文献 Identification of a ligand binding hot spot and structural motifs replicating aspects of tyrosyl-DNA phosphodiesterase I (TDP1) phosphoryl recognition by crystallographic fragment cocktail screening. Nucleic Acids Res., 47, 2019
6N19	Crystal structure of Tdp1 catalytic domain in complex with compound XZ578 分子名称: 1,2-ETHANEDIOL, 4-[(4-carboxybutanoyl)amino]benzene-1,2-dicarboxylic acid, Tyrosyl-DNA phosphodiesterase 1 著者 Lountos, G.T, Zhao, X.Z, Kiselev, E, Tropea, J.E, Needle, D, Burke Jr, T.R, Pommier, Y, Waugh, D.S. 登録日 2018-11-08 公開日 2019-07-03 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.501 Å) 主引用文献 Identification of a ligand binding hot spot and structural motifs replicating aspects of tyrosyl-DNA phosphodiesterase I (TDP1) phosphoryl recognition by crystallographic fragment cocktail screening. Nucleic Acids Res., 47, 2019
6N17	Crystal structure of Tdp1 catalytic domain in complex with compound XZ577 分子名称: 1,2-ETHANEDIOL, 4-[(3-carboxypropanoyl)amino]benzene-1,2-dicarboxylic acid, DIMETHYL SULFOXIDE, ... 著者 Lountos, G.T, Zhao, X.Z, Kiselev, E, Tropea, J.E, Needle, D, Burke Jr, T.R, Pommier, Y, Waugh, D.S. 登録日 2018-11-08 公開日 2019-07-03 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.639 Å) 主引用文献 Identification of a ligand binding hot spot and structural motifs replicating aspects of tyrosyl-DNA phosphodiesterase I (TDP1) phosphoryl recognition by crystallographic fragment cocktail screening. Nucleic Acids Res., 47, 2019
6CFN	Crystal Structure of the DNA-free Glucocorticoid Receptor DNA Binding Domain 分子名称: Glucocorticoid receptor, ZINC ION 著者 Frank, F, Okafor, C.D, Ortlund, E.A. 登録日 2018-02-15 公開日 2018-09-26 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 The first crystal structure of a DNA-free nuclear receptor DNA binding domain sheds light on DNA-driven allostery in the glucocorticoid receptor. Sci Rep, 8, 2018
2X6U	Crystal structure of human TBX5 in the DNA-free form 分子名称: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, MAGNESIUM ION, T-BOX TRANSCRIPTION FACTOR TBX5 著者 Stirnimann, C.U, Mueller, C.W. 登録日 2010-02-22 公開日 2010-04-28 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural Basis of Tbx5-DNA Recognition: The T-Box Domain in its DNA-Bound and -Unbound Form. J.Mol.Biol., 400, 2010
5HRB	The crystal structure of AsfvPolX:DNA1 binary complex 分子名称: BETA-MERCAPTOETHANOL, DNA (5'-D(*CP*GP*GP*AP*TP*AP*TP*CP*C)-3'), DNA polymerase beta-like protein, ... 著者 Chen, Y.Q, Zhang, J, Gan, J.H. 登録日 2016-01-23 公開日 2017-01-18 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1 To Be Published
1MBH	MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 2 分子名称: C-MYB 著者 Ogata, K, Morikawa, S, Nakamura, H, Hojo, H, Yoshimura, S, Zhang, R, Aimoto, S, Ametani, Y, Hirata, Z, Sarai, A, Ishii, S, Nishimura, Y. 登録日 1995-05-19 公開日 1995-09-15 最終更新日 2024-06-05 実験手法 SOLUTION NMR 主引用文献 Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb. Nat.Struct.Biol., 2, 1995
1BIB	THE E. COLI BIOTIN HOLOENZYME SYNTHETASE(SLASH)BIO REPRESSOR CRYSTAL STRUCTURE DELINEATES THE BIOTIN AND DNA-BINDING DOMAINS 分子名称: BIOTIN, BIR A 著者 Wilson, K.P, Shewchuk, L.M, Matthews, B.W. 登録日 1992-07-06 公開日 1993-10-31 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Escherichia coli biotin holoenzyme synthetase/bio repressor crystal structure delineates the biotin- and DNA-binding domains. Proc.Natl.Acad.Sci.USA, 89, 1992
2AYE	Crystal structure of the unliganded E2 DNA Binding Domain from HPV6a 分子名称: GLYCEROL, Regulatory protein E2, SULFATE ION 著者 Hooley, E, Brady, R.L, Gaston, K. 登録日 2005-09-07 公開日 2006-08-22 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 The recognition of local DNA conformation by the human papillomavirus type 6 E2 protein. Nucleic Acids Res., 34, 2006
7XV9	Crystal structure of the Human TR4 DNA-Binding Domain 分子名称: Nuclear receptor subfamily 2 group C member 2, ZINC ION 著者 Liu, Y, Chen, Z. 登録日 2022-05-21 公開日 2022-12-28 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.599 Å) 主引用文献 Structures of human TR4LBD-JAZF1 and TR4DBD-DNA complexes reveal the molecular basis of transcriptional regulation. Nucleic Acids Res., 51, 2023
1J59	CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE 分子名称: 5'-D(*AP*TP*AP*TP*GP*TP*CP*AP*CP*AP*CP*TP*TP*TP*TP*CP*G )-3', 5'-D(*GP*CP*GP*AP*AP*AP*AP*GP*TP*GP*TP*GP*AP*C)-3', ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, ... 著者 Parkinson, G, Wilson, C, Gunasekera, A, Ebright, Y.W, Ebright, R.H, Berman, H.M. 登録日 2002-03-01 公開日 2002-03-01 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure of the CAP-DNA complex at 2.5 angstroms resolution: a complete picture of the protein-DNA interface. J.Mol.Biol., 260, 1996
5M0R	Cryo-EM reconstruction of the maedi-visna virus (MVV) strand transfer complex 分子名称: integrase, tDNA, vDNA, ... 著者 Pye, V.E, Ballandras-Colas, A, Maskell, D, Locke, J, Kotecha, A, Costa, A, Cherepanov, P. 登録日 2016-10-05 公開日 2017-01-18 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (8.2 Å) 主引用文献 A supramolecular assembly mediates lentiviral DNA integration. Science, 355, 2017
5F54	Structure of RecJ complexed with dTMP 分子名称: MANGANESE (II) ION, Single-stranded-DNA-specific exonuclease, THYMIDINE-5'-PHOSPHATE 著者 Hua, Y, Zhao, Y, Cheng, K. 登録日 2015-12-04 公開日 2016-06-15 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural basis for DNA 5 -end resection by RecJ Elife, 5, 2016
2C62	Crystal Structure of the Human Transcription Cofactor PC4 in Complex with Single-Stranded DNA 分子名称: 5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP *TP*TP*TP*TP*TP*TP*TP*TP*TP*G)-3', ACTIVATED RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR P15, SULFATE ION 著者 Werten, S, Moras, D. 登録日 2005-11-07 公開日 2006-01-11 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.74 Å) 主引用文献 A Global Transcription Cofactor Bound to Juxtaposed Strands of Unwound DNA Nat.Struct.Mol.Biol., 13, 2006
5NWL	Crystal structure of a human RAD51-ATP filament. 分子名称: ADENOSINE-5'-TRIPHOSPHATE, DNA repair protein RAD51 homolog 1, MAGNESIUM ION 著者 Pellegrini, L, Moschetti, T. 登録日 2017-05-06 公開日 2018-03-07 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3.93 Å) 主引用文献 Two distinct conformational states define the interaction of human RAD51-ATP with single-stranded DNA. EMBO J., 37, 2018

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