6N19

Crystal structure of Tdp1 catalytic domain in complex with compound XZ578

Summary for 6N19

• Entry DOI: 10.2210/pdb6n19/pdb
• Descriptor: Tyrosyl-DNA phosphodiesterase 1, 4-[(4-carboxybutanoyl)amino]benzene-1,2-dicarboxylic acid, 1,2-ETHANEDIOL, ... (4 entities in total)
• Functional Keywords: fragment based drug design, anti-cancer drug design, dna binding protein, hydrolase
• Biological source: Homo sapiens (Human)
• Total number of polymer chains: 2
• Total formula weight: 105029.37

Authors

Lountos, G.T.,Zhao, X.Z.,Kiselev, E.,Tropea, J.E.,Needle, D.,Burke Jr., T.R.,Pommier, Y.,Waugh, D.S. (deposition date: 2018-11-08, release date: 2019-07-03, Last modification date: 2023-10-11)

• Primary citation: Lountos, G.T.,Zhao, X.Z.,Kiselev, E.,Tropea, J.E.,Needle, D.,Pommier, Y.,Burke, T.R.,Waugh, D.S.; Identification of a ligand binding hot spot and structural motifs replicating aspects of tyrosyl-DNA phosphodiesterase I (TDP1) phosphoryl recognition by crystallographic fragment cocktail screening.; Nucleic Acids Res., 47:10134-10150, 2019; PubMed: 31199869; DOI: 10.1093/nar/gkz515

Experimental method

X-RAY DIFFRACTION (1.501 Å)