PDB: 7404 件ウェブページステータス検索Chemie searchBIRD

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8IFD	Dibekacin-added human 80S ribosome 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... 著者 Tomono, J, Asano, K, Chiashi, T, Tanaka, Y, Yokoyama, T. 登録日 2023-02-17 公開日 2024-02-14 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (2.59 Å) 主引用文献 Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside. J.Biochem., 175, 2024
8IFE	Arbekacin-added human 80S ribosome 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... 著者 Tomono, J, Asano, K, Chiashi, T, Tanaka, Y, Yokoyama, T. 登録日 2023-02-17 公開日 2024-02-14 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (2.57 Å) 主引用文献 Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside. J.Biochem., 175, 2024
6TB3	yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex 分子名称: 25S rRNA, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, ... 著者 Buschauer, R, Cheng, J, Berninghausen, O, Tesina, P, Becker, T, Beckmann, R. 登録日 2019-10-31 公開日 2020-04-22 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 The Ccr4-Not complex monitors the translating ribosome for codon optimality. Science, 368, 2020
4ADX	The Cryo-EM Structure of the Archaeal 50S Ribosomal Subunit in Complex with Initiation Factor 6 分子名称: 23S Ribosomal RNA EXPANSION SEGMENTS, 23S ribosomal RNA, 5S Ribosomal RNA, ... 著者 Greber, B.J, Boehringer, D, Godinic-Mikulcic, V, Crnkovic, A, Ibba, M, Weygand-Durasevic, I, Ban, N. 登録日 2012-01-04 公開日 2012-02-08 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (6.6 Å) 主引用文献 Cryo-Em Structure of the Archaeal 50S Ribosomal Subunit in Complex with Initiation Factor 6 and Implications for Ribosome Evolution J.Mol.Biol., 418, 2012
6DZI	Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex 分子名称: 16S rRNA, 23 S rRNA (3119-MER), 30S ribosomal protein S10, ... 著者 Sharma, M.R, Li, Y, Korripella, R, Yang, Y, Kaushal, P.S, Lin, Q, Wade, J.T, Gray, A.G, Derbyshire, K.M, Agrawal, R.K, Ojha, A. 登録日 2018-07-05 公開日 2018-09-26 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.46 Å) 主引用文献 Zinc depletion induces ribosome hibernation in mycobacteria. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
2GO5	Structure of signal recognition particle receptor (SR) in complex with signal recognition particle (SRP) and ribosome nascent chain complex 分子名称: SRP RNA, Signal recognition particle 19 kDa protein (SRP19), Signal recognition particle 54 kDa protein (SRP54), ... 著者 Halic, M, Gartmann, M, Schlenker, O, Mielke, T, Pool, M.R, Sinning, I, Beckmann, R. 登録日 2006-04-12 公開日 2006-06-13 最終更新日 2024-10-09 実験手法 ELECTRON MICROSCOPY (7.4 Å) 主引用文献 Signal Recognition Particle Receptor Exposes the Ribosomal Translocon Binding Site Science, 312, 2006
4V51	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin 分子名称: 16S ribosomal RNA, 23S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ... 著者 Selmer, M, Dunham, C.M, Murphy, F.V, Weixlbaumer, A, Petry, S, Weir, J.R, Kelley, A.C, Ramakrishnan, V. 登録日 2006-07-31 公開日 2014-07-09 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structure of the 70S ribosome complexed with mRNA and tRNA. Science, 313, 2006
1JQT	Fitting of L11 protein in the low resolution cryo-EM map of E.coli 70S ribosome 分子名称: 50S Ribosomal protein L11 著者 Agrawal, R.K, Linde, J, Segupta, J, Nierhaus, K.H, Frank, J. 登録日 2001-08-07 公開日 2001-09-07 最終更新日 2024-02-07 実験手法 ELECTRON MICROSCOPY (18 Å) 主引用文献 Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation. J.Mol.Biol., 311, 2001
8VTW	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1-cyclopropyl-7-(4-{4-[({[(3aR,4R,7R,8S,9S,10R,11R,13R,14E,15S,15aR)-10-{[(2S,3R,4S,6R)-4-(dimethylamino)-3-hydroxy-6-methyloxan-2-yl]oxy}-4-ethyl-11-methoxy-14-(methoxyimino)-3a,7,9,11,13,15-hexamethyl-2,6-dioxododecahydro-2H,4H-[1,3]dioxolo[4,5-c]oxacyclotetradecin-8-yl]oxy}carbonyl)amino]butyl}piperazin-1-yl)-6-fluoro-4-oxo-1,4-dihydroquinoline-3-carboxylic acid (non-preferred name), 16S Ribosomal RNA, ... 著者 Aleksandrova, E.V, Ma, C.-X, Klepacki, D, Alizadeh, F, Vazquez-Laslop, N, Liang, J.-H, Polikanov, Y.S, Mankin, A.S. 登録日 2024-01-27 公開日 2024-08-07 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Macrolones target bacterial ribosomes and DNA gyrase and can evade resistance mechanisms. Nat.Chem.Biol., 2024
4V6X	Structure of the human 80S ribosome 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... 著者 Anger, A.M, Armache, J.-P, Berninghausen, O, Habeck, M, Subklewe, M, Wilson, D.N, Beckmann, R. 登録日 2013-02-27 公開日 2014-07-09 最終更新日 2023-02-01 実験手法 ELECTRON MICROSCOPY (5 Å) 主引用文献 Structures of the human and Drosophila 80S ribosome. Nature, 497, 2013
7O80	Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ... 著者 Bhatt, P.R, Scaiola, A, Leibundgut, M.A, Atkins, J.F, Ban, N. 登録日 2021-04-14 公開日 2021-06-02 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome. Science, 372, 2021
6NU3	Structural insights into unique features of the human mitochondrial ribosome recycling 分子名称: 12S rRNA, 16S rRNA, 28S ribosomal protein S10, ... 著者 Sharma, M.R, Koripella, R.K, Agrawal, R.K. 登録日 2019-01-30 公開日 2019-04-17 最終更新日 2019-12-11 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 Structural insights into unique features of the human mitochondrial ribosome recycling. Proc.Natl.Acad.Sci.USA, 116, 2019
4V95	Crystal structure of YAEJ bound to the 70S ribosome 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S Ribosomal Protein S10, ... 著者 Gagnon, M.G, Seetharaman, S.V, Bulkley, D.P, Steitz, T.A. 登録日 2012-01-27 公開日 2014-07-09 最終更新日 2018-07-11 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structural basis for the rescue of stalled ribosomes: structure of YaeJ bound to the ribosome. Science, 335, 2012
4V7H	Structure of the 80S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution 分子名称: 18S rRNA, 26S ribosomal RNA, 40S ribosomal protein S0(A), ... 著者 Taylor, D.J, Devkota, B, Huang, A.D, Topf, M, Narayanan, E, Sali, A, Harvey, S.C, Frank, J. 登録日 2009-09-22 公開日 2014-07-09 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (8.9 Å) 主引用文献 Comprehensive molecular structure of the eukaryotic ribosome. Structure, 17, 2009
4V54	Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Borovinskaya, M.A, Pai, R.D, Zhang, W, Schuwirth, B.-S, Holton, J.M, Hirokawa, G, Kaji, H, Kaji, A, Cate, J.H.D. 登録日 2007-06-16 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Structural basis for aminoglycoside inhibition of bacterial ribosome recycling. Nat.Struct.Mol.Biol., 14, 2007
4V4Q	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Schuwirth, B.S, Borovinskaya, M.A, Hau, C.W, Zhang, W, Vila-Sanjurjo, A, Holton, J.M, Cate, J.H.D. 登録日 2005-08-30 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.46 Å) 主引用文献 Structures of the bacterial ribosome at 3.5 A resolution. Science, 310, 2005
2NOQ	Structure of ribosome-bound cricket paralysis virus IRES RNA 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S5, ... 著者 Schuler, M, Connell, S.R, Lescoute, A, Giesebrecht, J, Dabrowski, M, Schroeer, B, Mielke, T, Penczek, P.A, Westhof, E, Spahn, C.M.T. 登録日 2006-10-26 公開日 2006-11-21 最終更新日 2023-12-27 実験手法 ELECTRON MICROSCOPY (7.3 Å) 主引用文献 Structure of the ribosome-bound cricket paralysis virus IRES RNA. Nat.Struct.Mol.Biol., 13, 2006
6RXV	Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B2 分子名称: 35S ribosomal RNA, 40S ribosomal protein S1, 40S ribosomal protein S11-like protein, ... 著者 Cheng, J, Kellner, N, Griesel, S, Berninghausen, O, Beckmann, R, Hurt, E. 登録日 2019-06-10 公開日 2019-08-14 最終更新日 2019-10-02 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration. Mol.Cell, 75, 2019
1DD4	Crystal structure of ribosomal protein l12 from thermotoga maritim 分子名称: 50S RIBOSOMAL PROTEIN L7/L12, HEXATANTALUM DODECABROMIDE 著者 Wahl, M.C, Bourenkov, G.P, Bartunik, H.D, Huber, R. 登録日 1999-11-08 公開日 2000-11-13 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Flexibility, conformational diversity and two dimerization modes in complexes of ribosomal protein L12. Embo J., 19, 2000
1DD3	CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN L12 FROM THERMOTOGA MARITIMA 分子名称: 50S RIBOSOMAL PROTEIN L7/L12 著者 Wahl, M.C, Bourenkov, G.P, Bartunik, H.D, Huber, R. 登録日 1999-11-08 公開日 2000-11-13 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Flexibility, conformational diversity and two dimerization modes in complexes of ribosomal protein L12. EMBO J., 19, 2000
8G6X	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe 分子名称: 23S rRNA, 3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate), 3-aminobenzamide, ... 著者 Majumdar, C, Cate, J.H.D. 登録日 2023-02-16 公開日 2023-03-22 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (2.31 Å) 主引用文献 Aminobenzoic Acid Derivatives Obstruct Induced Fit in the Catalytic Center of the Ribosome. Acs Cent.Sci., 9, 2023
6XIQ	Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress 分子名称: 18S ribosomal RNA, 35S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Zhou, Y, Bartesaghi, A, Silva, G.M. 登録日 2020-06-21 公開日 2020-08-26 最終更新日 2020-09-23 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Structural impact of K63 ubiquitin on yeast translocating ribosomes under oxidative stress. Proc.Natl.Acad.Sci.USA, 117, 2020
8UU8	Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C) 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 5S Ribosomal RNA, ... 著者 Seely, S.M, Basu, R.S, Gagnon, M.G. 登録日 2023-10-31 公開日 2024-02-28 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Mechanistic insights into the alternative ribosome recycling by HflXr. Nucleic Acids Res., 52, 2024
8G6Y	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe 分子名称: 23S rRNA, 3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate), 3-aminopyridine-4-carboxamide, ... 著者 Majumdar, C, Cate, J.H.D. 登録日 2023-02-16 公開日 2023-04-05 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (2.09 Å) 主引用文献 Aminobenzoic Acid Derivatives Obstruct Induced Fit in the Catalytic Center of the Ribosome. Acs Cent.Sci., 9, 2023
8UU9	Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D) 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 5S Ribosomal RNA, ... 著者 Seely, S.M, Basu, R.S, Gagnon, M.G. 登録日 2023-10-31 公開日 2024-02-28 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Mechanistic insights into the alternative ribosome recycling by HflXr. Nucleic Acids Res., 52, 2024

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