Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1ZMN
DownloadVisualize
BU of 1zmn by Molmil
Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with (R)-1-(4-(4-(hydroxymethyl)-1,3,2-dioxaborolan-2-yl)phenyl)guanidine
分子名称: (R)-1-(4-(4-(HYDROXYMETHYL)-1,3,2-DIOXABOROLAN-2-YL)PHENYL)GUANIDINE, Coagulation factor XI, SULFATE ION
著者Lazarova, T.I, Jin, L, Rynkiewicz, M.J, Gorga, J.C, Bibbins, F, Meyers, H.V, Babine, R.E, Strickler, J.E.
登録日2005-05-10
公開日2006-05-09
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Synthesis and in vitro biological evaluation of aryl boronic acids as potential inhibitors of factor XIa.
Bioorg.Med.Chem.Lett., 16, 2006
9FWI
DownloadVisualize
BU of 9fwi by Molmil
Ensemble model of ligand-free SARS-CoV-2 NSP10-NSP14 (ExoN) and in complex with partially bound VT00025
分子名称: (3-oxidanylazetidin-1-yl)-phenyl-methanone, DIMETHYL SULFOXIDE, Guanine-N7 methyltransferase nsp14, ...
著者Krojer, T, Kozielski, F, Sele, C, Nyblom, M, Fisher, S.Z, Knecht, W.
登録日2024-06-30
公開日2025-07-09
実験手法X-RAY DIFFRACTION (1.533 Å)
主引用文献Ensemble model of ligand-free SARS-CoV-2 NSP10-NSP14 (ExoN) and in complex with partially bound VT00025
To Be Published
7D22
DownloadVisualize
BU of 7d22 by Molmil
Hsp90 alpha N-terminal domain in complex with a 6B compund
分子名称: 9-[(3-tert-butyl-1,2-oxazol-5-yl)methyl]-6-chloranyl-purin-2-amine, Heat shock protein HSP 90-alpha
著者Shin, S.C, Kim, E.E.
登録日2020-09-15
公開日2021-07-28
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural Basis for Design of New Purine-Based Inhibitors Targeting the Hydrophobic Binding Pocket of Hsp90.
Int J Mol Sci, 21, 2020
7D1V
DownloadVisualize
BU of 7d1v by Molmil
Hsp90 alpha N-terminal domain in complex with a 6C compund
分子名称: 6-chloranyl-9-[(3-propan-2-yl-1,2-oxazol-5-yl)methyl]purin-2-amine, Heat shock protein HSP 90-alpha
著者Shin, S.C, Kim, E.E.
登録日2020-09-15
公開日2021-07-28
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.332 Å)
主引用文献Structural Basis for Design of New Purine-Based Inhibitors Targeting the Hydrophobic Binding Pocket of Hsp90.
Int J Mol Sci, 21, 2020
4XP2
DownloadVisualize
BU of 4xp2 by Molmil
Crystal structure of ERK2 in complex with an inhibitor
分子名称: 1-phenyl-1H-1,2,4-triazole-3,5-diamine, DIMETHYL SULFOXIDE, Mitogen-activated protein kinase 1, ...
著者Gelin, M, Allemand, F, Labesse, G, Guichou, J.F.
登録日2015-01-16
公開日2015-08-12
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.748 Å)
主引用文献Combining `dry' co-crystallization and in situ diffraction to facilitate ligand screening by X-ray crystallography.
Acta Crystallogr.,Sect.D, 71, 2015
4XTX
DownloadVisualize
BU of 4xtx by Molmil
Mycobacterium tuberculosis biotin ligase complexed with bisubstrate inhibitor 57 with azide in place of ribose 2'OH
分子名称: 1,2-ETHANEDIOL, 9-[2-azido-2-deoxy-5-O-({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}sulfamoyl)-beta-D-arabinofuranosyl]-9H-purin-6-amine, Bifunctional ligase/repressor BirA
著者De la Mora-Rey, T, Finzel, B.C.
登録日2015-01-24
公開日2015-09-02
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.30010319 Å)
主引用文献Targeting Mycobacterium tuberculosis Biotin Protein Ligase (MtBPL) with Nucleoside-Based Bisubstrate Adenylation Inhibitors.
J.Med.Chem., 58, 2015
9FVI
DownloadVisualize
BU of 9fvi by Molmil
Crystal structure of 14-3-3 sigma in complex with Tau pS214 peptide and covalent stabilizer JS18
分子名称: 1-(3-bromanyl-4-methyl-phenyl)-2-(3-methylphenyl)imidazole, 14-3-3 protein sigma, Microtubule-associated protein tau
著者van den Oetelaar, M.C.M, Scheele, J.J.A, Ottmann, C, Brunsveld, L.
登録日2024-06-27
公開日2025-07-09
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Site-selective stabilization of the 14-3-3/tau protein-protein interaction
To Be Published
6Q10
DownloadVisualize
BU of 6q10 by Molmil
Crystal structure of the soluble domain (residues 71-217) of a conserved hypothetical secreted protein (Rv2700 ortholog) from Mycobacterium marinum
分子名称: 1,2-ETHANEDIOL, MymaA.19257.a.B3
著者Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2019-08-02
公開日2019-08-14
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献SSGCID, Mycobacerium marinum, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, secreted protein, Rv2700 ortholog
to be published
8WHI
DownloadVisualize
BU of 8whi by Molmil
Crystal structure of native CLASP2 in complex with CLIP170
分子名称: 1,2-ETHANEDIOL, CLIP-associating protein 2, CLIP1 protein, ...
著者Jin, G, Wei, Z.
登録日2023-09-23
公開日2024-08-28
実験手法X-RAY DIFFRACTION (1.853 Å)
主引用文献CLASP-mediated competitive binding in protein condensates directs microtubule growth.
Nat Commun, 15, 2024
4B95
DownloadVisualize
BU of 4b95 by Molmil
pVHL-EloB-EloB-EloC complex_(2S,4R)-1-(2-chlorophenyl)carbonyl-N-[(4-chlorophenyl)methyl]-4-oxidanyl-pyrrolidine-2-carboxamide bound
分子名称: (2S,4R)-1-(2-chlorophenyl)carbonyl-N-[(4-chlorophenyl)methyl]-4-oxidanyl-pyrrolidine-2-carboxamide, ACETATE ION, TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1, ...
著者Buckley, D.L, Gustafson, J.L, VanMolle, I, Roth, A.G, SeopTae, H, Gareiss, P.C, Jorgensen, W.L, Ciulli, A, Crews, C.M.
登録日2012-08-31
公開日2012-10-24
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Small-Molecule Inhibitors of the Interaction between the E3 Ligase Vhl and Hif1Alpha
Angew.Chem.Int.Ed.Engl., 51, 2012
4XG7
DownloadVisualize
BU of 4xg7 by Molmil
Crystal structure of an inhibitor-bound Syk
分子名称: 1-[(3-methyl-1-{2-[(1-methyl-1H-indazol-5-yl)amino]pyrimidin-4-yl}-1H-pyrazol-4-yl)methyl]azetidin-3-ol, Tyrosine-protein kinase SYK
著者Lee, S.J, Choi, J, Han, B.G, Song, H, Koh, J.S, Lee, B.I.
登録日2014-12-30
公開日2015-12-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Crystal structures of spleen tyrosine kinase in complex with novel inhibitors: structural insights for design of anticancer drugs
Febs J., 283, 2016
6Q3P
DownloadVisualize
BU of 6q3p by Molmil
Atomic resolution crystal structure of an AAB collagen heterotrimer
分子名称: 1,2-ETHANEDIOL, GLYCEROL, Leading Chain of the AAB Collagen Heterotrimer, ...
著者Jalan, A.A, Hartgerink, J.D, Brear, P, Leitinger, B, Farndale, R.W.
登録日2018-12-04
公開日2019-12-18
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.03 Å)
主引用文献Atomic resolution crystal structure of an AAB collagen heterotrimer
Nat.Chem.Biol., 2019
4XG6
DownloadVisualize
BU of 4xg6 by Molmil
Crystal structure of an inhibitor-bound Syk
分子名称: 1-[(1-{2-[(3,5-dimethylphenyl)amino]pyrimidin-4-yl}-3-methyl-1H-pyrazol-4-yl)methyl]azetidin-3-ol, Tyrosine-protein kinase SYK
著者Lee, S.J, Choi, J, Han, B.G, Song, H, Koh, J.S, Lee, B.I.
登録日2014-12-30
公開日2015-12-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structures of spleen tyrosine kinase in complex with novel inhibitors: structural insights for design of anticancer drugs
Febs J., 283, 2016
5W8Y
DownloadVisualize
BU of 5w8y by Molmil
Solution Structure of XPH1, a Hybrid Sequence of Xfaso 1 and Pfl 6, Two Cro Proteins With Different Folds
分子名称: protein XPH1
著者Kumirov, V.K, Dykstra, E.M, Cordes, M.H.
登録日2017-06-22
公開日2018-07-11
最終更新日2024-10-16
実験手法SOLUTION NMR
主引用文献Multistep mutational transformation of a protein fold through structural intermediates.
Protein Sci., 27, 2018
7D9P
DownloadVisualize
BU of 7d9p by Molmil
Crystal Structure of Recombinant Human Acetylcholinesterase in Complex with Compound 12
分子名称: (2S)-2-[[4-fluoranyl-1-[(2-fluorophenyl)methyl]piperidin-4-yl]methyl]-5,6-dimethoxy-2,3-dihydroinden-1-one, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholinesterase
著者Liu, Q.F, Yin, W.C.
登録日2020-10-14
公開日2021-08-25
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Kinetics-Driven Drug Design Strategy for Next-Generation Acetylcholinesterase Inhibitors to Clinical Candidate.
J.Med.Chem., 64, 2021
6T1Z
DownloadVisualize
BU of 6t1z by Molmil
LmrP from L. lactis, in an outward-open conformation, bound to Hoechst 33342
分子名称: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHATE, 2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DODECYL-ALPHA-D-MALTOSIDE, ...
著者Hutchin, A, Debruycker, V, Masureel, M, Legrand, P, Remaut, H, Govaerts, C.
登録日2019-10-07
公開日2020-07-29
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献An embedded lipid in the multidrug transporter LmrP suggests a mechanism for polyspecificity.
Nat.Struct.Mol.Biol., 27, 2020
6D6L
DownloadVisualize
BU of 6d6l by Molmil
The structure of ligand binding domain of LasR in complex with TP-1 homolog, compound 14
分子名称: 2,4-dibromo-6-{[(2-nitrobenzene-1-carbonyl)amino]methyl}phenyl 4-chlorobenzoate, Transcriptional activator protein LasR
著者Dong, S.H, Nair, S.K.
登録日2018-04-21
公開日2018-08-08
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Structural and Biochemical Studies of Non-native Agonists of the LasR Quorum-Sensing Receptor Reveal an L3 Loop "Out" Conformation for LasR.
Cell Chem Biol, 25, 2018
4M0M
DownloadVisualize
BU of 4m0m by Molmil
The crystal structure of a functionally unknown protein lpg2422 from Legionella pneumophila subsp. pneumophila str. Philadelphia 1
分子名称: PHOSPHATE ION, Putative uncharacterized protein, TETRAETHYLENE GLYCOL
著者Tan, K, Li, H, Clancy, S, Shuman, H, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
登録日2013-08-01
公開日2013-08-21
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.192 Å)
主引用文献The crystal structure of a functionally unknown protein lpg2422 from Legionella pneumophila subsp. pneumophila str. Philadelphia 1
To be Published
7DAH
DownloadVisualize
BU of 7dah by Molmil
Adenosine triphosphate phosphoribosyltransferase from Vibrio cholerae in complex with ATP and PRPP
分子名称: 1,2-ETHANEDIOL, 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, ADENOSINE-5'-TRIPHOSPHATE, ...
著者Pal, R.K, Gourinath, S, Biswal, B.K.
登録日2020-10-16
公開日2021-10-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.92 Å)
主引用文献Adenosine triphosphate phosphoribosyltransferase from Vibrio cholerae in complex with ATP and PRPP
To Be Published
9HCM
DownloadVisualize
BU of 9hcm by Molmil
Crystal structure of human TRF1 TRFH domain in complex with compound 45
分子名称: 1,2-ETHANEDIOL, 1-[4-(trifluoromethyloxy)phenyl]thiourea, CALCIUM ION, ...
著者Casale, G, Le Bihan, Y.-V, Van Montfort, R.L.M, Guettler, S.
登録日2024-11-11
公開日2025-11-19
実験手法X-RAY DIFFRACTION (2.32 Å)
主引用文献Discovery of first-in-class inhibitors of the TRF1-TIN2 protein-protein interaction by fragment screening
To Be Published
9HCS
DownloadVisualize
BU of 9hcs by Molmil
Crystal structure of human TRF1 TRFH domain in complex with compound 49
分子名称: 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, N-ethyl-N'-(5-methyl-1,2-oxazol-3-yl)urea, ...
著者Casale, G, Le Bihan, Y.-V, Van Montfort, R.L.M, Guettler, S.
登録日2024-11-11
公開日2025-11-19
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Discovery of first-in-class inhibitors of the TRF1-TIN2 protein-protein interaction by fragment screening
To Be Published
9HCU
DownloadVisualize
BU of 9hcu by Molmil
Crystal structure of human TRF1 TRFH domain in complex with compound 51
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, N-(4-fluorophenyl)-2-(piperazin-1-yl)acetamide, ...
著者Casale, G, Le Bihan, Y.-V, van Montfort, R.L.M, Guettler, S.
登録日2024-11-11
公開日2025-11-19
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Discovery of first-in-class inhibitors of the TRF1-TIN2 protein-protein interaction by fragment screening
To Be Published
9HCX
DownloadVisualize
BU of 9hcx by Molmil
Crystal structure of human TRF1 TRFH domain in complex with compound 53
分子名称: 1,2-ETHANEDIOL, 1-(3,4,5-trimethoxyphenyl)methanamine, CALCIUM ION, ...
著者Casale, G, Le Bihan, Y.-V, van Montfort, R.L.M, Guettler, S.
登録日2024-11-11
公開日2025-11-19
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Discovery of first-in-class inhibitors of the TRF1-TIN2 protein-protein interaction by fragment screening
To Be Published
4M1C
DownloadVisualize
BU of 4m1c by Molmil
Crystal Structure Analysis of Fab-Bound Human Insulin Degrading Enzyme (IDE) in Complex with Amyloid-Beta (1-40)
分子名称: Amyloid beta A4 protein, Fab-bound IDE, heavy chain, ...
著者McCord, L.M, Liang, W, Farcasanu, M, Scherpelz, K, Meredith, S.C, Koide, S, Tang, W.J.
登録日2013-08-02
公開日2014-08-06
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (3.5007 Å)
主引用文献Crystal Structure Analysis of Fab-Bound Human Insulin Degrading Enzyme (IDE) in Complex with Amyloid-Beta (1-40)
To be Published
3HGN
DownloadVisualize
BU of 3hgn by Molmil
Structure of porcine pancreatic elastase complexed with a potent peptidyl inhibitor FR130180 determined by neutron crystallography
分子名称: 4-[[(2S)-3-methyl-1-oxo-1-[(2S)-2-[[(3S)-1,1,1-trifluoro-4-methyl-2-oxo-pentan-3-yl]carbamoyl]pyrrolidin-1-yl]butan-2-yl]carbamoyl]benzoic acid, CALCIUM ION, Elastase-1, ...
著者Tamada, T, Kinoshita, T, Kuroki, R, Tada, T.
登録日2009-05-14
公開日2009-07-28
最終更新日2024-10-30
実験手法NEUTRON DIFFRACTION (1.65 Å), X-RAY DIFFRACTION
主引用文献Combined High-Resolution Neutron and X-ray Analysis of Inhibited Elastase Confirms the Active-Site Oxyanion Hole but Rules against a Low-Barrier Hydrogen Bond
J.Am.Chem.Soc., 131, 2009

245011

件を2025-11-19に公開中

PDB statisticsPDBj update infoContact PDBjnumon