PDB: 1711 件ウェブページステータス検索Chemie searchBIRD

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1AM1	ATP BINDING SITE IN THE HSP90 MOLECULAR CHAPERONE 分子名称: ADENOSINE-5'-DIPHOSPHATE, HEAT SHOCK PROTEIN 90 著者 Pearl, L.H, Roe, S.M, Prodromou, C. 登録日 1997-06-20 公開日 1998-06-24 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Identification and structural characterization of the ATP/ADP-binding site in the Hsp90 molecular chaperone Cell(Cambridge,Mass.), 90, 1997
6J9E	Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with NusA and the bacteriophage protein P7 分子名称: 45L, DNA (29-MER), DNA-directed RNA polymerase subunit alpha, ... 著者 You, L.L, Zhang, Y. 登録日 2019-01-22 公開日 2019-07-17 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.41 Å) 主引用文献 Structural basis for transcription antitermination at bacterial intrinsic terminator. Nat Commun, 10, 2019
6J9F	Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with the bacteriophage protein P7 分子名称: 45L, DNA (29-MER), DNA-directed RNA polymerase subunit alpha, ... 著者 You, L.L, Zhang, Y. 登録日 2019-01-22 公開日 2019-07-17 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.95 Å) 主引用文献 Structural basis for transcription antitermination at bacterial intrinsic terminator. Nat Commun, 10, 2019
1U76	Crystal structure of hPCNA bound to residues 452-466 of the DNA polymerase-delta-p66 subunit 分子名称: KANRQVSITGFFQRK peptide from DNA polymerase delta subunit 3, Proliferating cell nuclear antigen 著者 Bruning, J.B, Shamoo, Y. 登録日 2004-08-02 公開日 2004-12-14 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structural and Thermodynamic Analysis of Human PCNA with Peptides Derived from DNA Polymerase-delta p66 Subunit and Flap Endonuclease-1. Structure, 12, 2004
3F1W	Crystal structure of a mutant proliferating cell nuclear antigen that blocks translesion synthesis 分子名称: Proliferating cell nuclear antigen 著者 Freudenthal, B.D, Ramaswamy, S, Washington, M.T. 登録日 2008-10-28 公開日 2008-12-23 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.901 Å) 主引用文献 Structure of a Mutant Form of Proliferating Cell Nuclear Antigen That Blocks Translesion DNA Synthesis. Biochemistry, 47, 2008
6EEC	Mycobacterium tuberculosis RNAP promoter unwinding intermediate complex with RbpA/CarD and AP3 promoter captured by Corallopyronin 分子名称: DNA (63-MER), DNA (65-MER), DNA-directed RNA polymerase subunit alpha, ... 著者 Darst, S.A, Campbell, E.A, Boyaci Selcuk, H, Chen, J. 登録日 2018-08-13 公開日 2018-11-21 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.55 Å) 主引用文献 Structures of an RNA polymerase promoter melting intermediate elucidate DNA unwinding. Nature, 565, 2019
6EDT	Mycobacterium tuberculosis RNAP open promoter complex with RbpA/CarD and AP3 promoter 分子名称: DNA (65-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Darst, S.A, Campbell, E.A, Boyaci Selcuk, H, Chen, J. 登録日 2018-08-10 公開日 2018-11-21 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY 主引用文献 Structures of an RNA polymerase promoter melting intermediate elucidate DNA unwinding. Nature, 565, 2019
6DLY	Crystal structure of DNA polymerase III subunit beta from Mycobacterium marinum in complex with a natural product 分子名称: 1,2-ETHANEDIOL, Beta sliding clamp, Natural product peptide 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2018-06-04 公開日 2019-06-12 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of DNA polymerase III subunit beta from Mycobacterium marinum in complex with a natural product to be published
6GAV	Extremely 'open' clamp structure of DNA gyrase: role of the Corynebacteriales GyrB specific insert 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA gyrase subunit B,DNA gyrase subunit A 著者 Petrella, S, Capton, E, Alzari, P.M, Aubry, A, MAyer, C. 登録日 2018-04-12 公開日 2019-02-20 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Overall Structures of Mycobacterium tuberculosis DNA Gyrase Reveal the Role of a Corynebacteriales GyrB-Specific Insert in ATPase Activity. Structure, 27, 2019
6GAU	Extremely 'open' clamp structure of DNA gyrase: role of the Corynebacteriales GyrB specific insert 分子名称: DNA gyrase subunit B,DNA gyrase subunit A, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER 著者 Petrella, S, Capton, E, Alzari, P.M, Aubry, A, Mayer, C. 登録日 2018-04-12 公開日 2019-02-20 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Overall Structures of Mycobacterium tuberculosis DNA Gyrase Reveal the Role of a Corynebacteriales GyrB-Specific Insert in ATPase Activity. Structure, 27, 2019
7OGP	Structure of the apo-state of the bacteriophage PhiKZ non-virion RNA polymerase - class including clamp 分子名称: DNA-directed RNA polymerase, PHIKZ055, PHIKZ068, ... 著者 de Martin Garrido, N, Lai Wan Loong, Y.T.E, Yakunina, M, Aylett, C.H.S. 登録日 2021-05-07 公開日 2021-07-07 最終更新日 2023-11-22 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structure of the bacteriophage PhiKZ non-virion RNA polymerase. Nucleic Acids Res., 49, 2021
3LX2	Crystal Structure analysis of PCNA from Thermococcus kodakaraensis tk0582 分子名称: DNA polymerase sliding clamp 2, SULFATE ION 著者 Ladner, J.E, Kelman, Z, Pan, M. 登録日 2010-02-24 公開日 2011-01-26 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal structures of two active proliferating cell nuclear antigens (PCNAs) encoded by Thermococcus kodakaraensis. Proc.Natl.Acad.Sci.USA, 108, 2011
3LX1	Crystal Structure analysis of PCNA1 from Thermococcus kodakaraensis tk0535 分子名称: DNA polymerase sliding clamp 1, SULFATE ION 著者 Ladner, J.E, Kelman, Z, Pan, M. 登録日 2010-02-24 公開日 2011-01-26 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structures of two active proliferating cell nuclear antigens (PCNAs) encoded by Thermococcus kodakaraensis. Proc.Natl.Acad.Sci.USA, 108, 2011
5GQO	Structure of the second Single Stranded DNA Binding protein (SSBb) from Mycobacterium smegmatis 分子名称: CALCIUM ION, Single-stranded DNA-binding protein 著者 Singh, A, Varshney, U, Vijayan, M. 登録日 2016-08-08 公開日 2016-10-12 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure of the second Single Stranded DNA Binding protein (SSBb) from Mycobacterium smegmatis. J. Struct. Biol., 196, 2016
6X5M	Crystal structure of a stabilized PAN ENE bimolecular triplex with a GC-clamped polyA tail, in complex with Fab-BL-3,6. 分子名称: Heavy chain Fab Bl-3 6, Light chain Fab BL-3 6, SULFATE ION, ... 著者 Swain, M, Li, M, Wlodawer, A, Le Grice, S.F.J. 登録日 2020-05-26 公開日 2020-06-24 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Dynamic bulge nucleotides in the KSHV PAN ENE triple helix provide a unique binding platform for small molecule ligands. Nucleic Acids Res., 49, 2021
6X5N	Crystal structure of a stabilized PAN ENE bimolecular triplex with a GC-clamped polyA tail, in complex with Fab-BL-3,6 分子名称: Heavy chain Fab Bl-3 6, Light chain Fab BL-3 6, SULFATE ION, ... 著者 Swain, M, Li, M, Woldawer, A, LeGrice, S.F.J. 登録日 2020-05-26 公開日 2020-07-01 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Dynamic bulge nucleotides in the KSHV PAN ENE triple helix provide a unique binding platform for small molecule ligands. Nucleic Acids Res., 49, 2021
6LK8	Structure of Xenopus laevis Cytoplasmic Ring subunit. 分子名称: GATOR complex protein SEC13, MGC154553 protein, MGC83295 protein, ... 著者 Shi, Y, Huang, G, Yan, C, Zhang, Y. 登録日 2019-12-18 公開日 2021-07-21 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (5.5 Å) 主引用文献 Structure of the cytoplasmic ring of the Xenopus laevis nuclear pore complex by cryo-electron microscopy single particle analysis. Cell Res., 30, 2020
6PYD	Structure of 3E9 antibody Fab bound to marinobufagenin 分子名称: (3beta,5beta,14alpha,15beta)-3,5-dihydroxy-14,15-epoxybufa-20,22-dienolide, 3E9 anti-marinobufagenin antibody Fab heavy chain, recloned with human IgG4 C region, ... 著者 Franklin, M.C, Macdonald, L.E, McWhirter, J, Murphy, A.J. 登録日 2019-07-29 公開日 2019-12-25 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Kappa-on-Heavy (KoH) bodies are a distinct class of fully-human antibody-like therapeutic agents with antigen-binding properties. Proc.Natl.Acad.Sci.USA, 117, 2020
8DK2	CryoEM structure of Pseudomonas aeruginosa PA14 JetABC in an unclamped state trapped in ATP dependent dimeric form 分子名称: DNA (26-MER), JetA, JetB, ... 著者 Deep, A, Gu, Y, Gao, Y, Ego, K, Herzik, M, Zhou, H, Corbett, K. 登録日 2022-07-01 公開日 2022-10-05 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 The SMC-family Wadjet complex protects bacteria from plasmid transformation by recognition and cleavage of closed-circular DNA. Mol.Cell, 82, 2022
7RG7	Crystal structure of nanoclamp8:VHH in complex with MTX 分子名称: MAGNESIUM ION, METHOTREXATE, nano CLostridial Antibody Mimetic Protein 8 VHH 著者 Guo, Z, Peat, T, Newman, J, Alexandrov, K. 登録日 2021-07-14 公開日 2021-12-22 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.83 Å) 主引用文献 Design of a methotrexate-controlled chemical dimerization system and its use in bio-electronic devices. Nat Commun, 12, 2021
7RGA	Crystal structure of nanoCLAMP3:VHH in complex with MTX 分子名称: METHOTREXATE, SODIUM ION, nano CLostridial Antibody Mimetic Protein 3 VHH 著者 Guo, Z, Alexandrov, K. 登録日 2021-07-14 公開日 2022-05-25 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Design of a methotrexate-controlled chemical dimerization system and its use in bio-electronic devices. Nat Commun, 12, 2021
6O09	Structure of AtPCNA in complex with the PIP motif of ATXR6 分子名称: Proliferating cellular nuclear antigen 1, Uncharacterized protein 著者 Couture, J.F, Davarinejad, H. 登録日 2019-02-15 公開日 2019-03-27 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.06 Å) 主引用文献 ATXR5/6 Forms Alternative Protein Complexes with PCNA and the Nucleosome Core Particle. J. Mol. Biol., 431, 2019
6ASG	Crystal structure of Thermus thermophilus RNA polymerase core enzyme 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Liu, Y, Lin, W, Ying, R, Ebright, R.H. 登録日 2017-08-24 公開日 2018-04-11 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.8 Å) 主引用文献 Structural Basis of Transcription Inhibition by Fidaxomicin (Lipiarmycin A3). Mol. Cell, 70, 2018
6FBV	Single particle cryo em structure of Mycobacterium tuberculosis RNA polymerase in complex with Fidaxomicin 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Das, K, Lin, W, Ebright, E. 登録日 2017-12-19 公開日 2018-02-28 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.52 Å) 主引用文献 Structural Basis of Transcription Inhibition by Fidaxomicin (Lipiarmycin A3). Mol. Cell, 70, 2018
5X51	RNA Polymerase II from Komagataella Pastoris (Type-3 crystal) 分子名称: DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II subunit, ... 著者 Ehara, H, Umehara, T, Sekine, S, Yokoyama, S. 登録日 2017-02-14 公開日 2017-05-17 実験手法 X-RAY DIFFRACTION (6.996 Å) 主引用文献 Crystal structure of RNA polymerase II from Komagataella pastoris Biochem. Biophys. Res. Commun., 487, 2017

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