Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6I5G
DownloadVisualize
BU of 6i5g by Molmil
X-ray structure of human soluble Epoxide Hydrolase C-terminal Domain (hsEH CTD)in complex with 15d-PGJ2
分子名称: (5E,14E)-11-oxoprosta-5,9,12,14-tetraen-1-oic acid, 1,2-ETHANEDIOL, Bifunctional epoxide hydrolase 2
著者Abis, G, Kopec, J, Yue, W.W, Conte, M.R.
登録日2018-11-13
公開日2019-05-29
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献15-deoxy-Delta12,14-Prostaglandin J2inhibits human soluble epoxide hydrolase by a dual orthosteric and allosteric mechanism.
Commun Biol, 2, 2019
8JSM
DownloadVisualize
BU of 8jsm by Molmil
The structure of EBOV L-VP35-RNA complex (conformation 1)
分子名称: Polymerase cofactor VP35, RNA-directed RNA polymerase L, The leader sequence of EBOV genome., ...
著者Qi, P, Yi, S.
登録日2023-06-20
公開日2023-09-27
最終更新日2025-07-16
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Molecular mechanism of de novo replication by the Ebola virus polymerase.
Nature, 622, 2023
9FHE
DownloadVisualize
BU of 9fhe by Molmil
hKHK-C in complex with BI-9787 (pH 5.5)
分子名称: (2~{S})-3-[3-[[4-[bis(fluoranyl)methyl]-3-cyano-6-[(3~{S})-3-(dimethylamino)pyrrolidin-1-yl]pyridin-2-yl]amino]-4-methylsulfanyl-phenyl]-2-methyl-propanoic acid, Ketohexokinase
著者Ebenhoch, R, Pautsch, A.
登録日2024-05-27
公開日2024-09-04
実験手法X-RAY DIFFRACTION (2.313 Å)
主引用文献Discovery of BI-9787, a potent zwitterionic ketohexokinase inhibitor with oral bioavailability.
Bioorg.Med.Chem.Lett., 112, 2024
6EYJ
DownloadVisualize
BU of 6eyj by Molmil
E-selectin lectin, EGF-like and two SCR domains complexed with glycomimetic ligand NV354
分子名称: (2~{S})-3-cyclohexyl-2-[(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-3,5-bis(oxidanyl)-6-[(1~{R},2~{R})-2-[(2~{R},3~{S},4~{R},5~{S},6~{R})-3,4,5-tris(oxidanyl)-6-(trifluoromethyl)oxan-2-yl]oxycyclohexyl]oxy-oxan-4-yl]oxy-propanoic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Jakob, R.P, Zihlmann, P, Preston, R.C, Varga, N, Ernst, B, Maier, T.
登録日2017-11-13
公開日2018-11-21
最終更新日2024-11-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Strengthening an Intramolecular Non-Classical Hydrogen Bond to Get in Shape for Binding.
Angew.Chem.Int.Ed.Engl., 63, 2024
4ND6
DownloadVisualize
BU of 4nd6 by Molmil
Crystal structure of apo 3-nitro-tyrosine tRNA synthetase (5B) in the open form
分子名称: GLYCEROL, Tyrosine-tRNA ligase
著者Cooley, R.B, Driggers, C.M, Karplus, P.A, Mehl, R.A.
登録日2013-10-25
公開日2014-03-19
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural Basis of Improved Second-Generation 3-Nitro-tyrosine tRNA Synthetases.
Biochemistry, 53, 2014
8XL2
DownloadVisualize
BU of 8xl2 by Molmil
Human acetyl-CoA carboxylase 1 filament in complex with acetyl-CoA (ACC1-inact)
分子名称: ACETYL COENZYME *A, Acetyl-CoA carboxylase 1
著者Zhou, F.Y, Zhang, Y.Y, Zhou, Q, Hu, Q.
登録日2023-12-25
公開日2024-10-23
実験手法ELECTRON MICROSCOPY (2.73 Å)
主引用文献Filament structures unveil the dynamic organization of human acetyl-CoA carboxylase.
Sci Adv, 10, 2024
8XF9
DownloadVisualize
BU of 8xf9 by Molmil
High-resolution structure of the siderophore periplasmic binding protein FtsB mutant Y137A from Streptococcus pyogenes
分子名称: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Caaveiro, J.M.M, Fernandez-Perez, J, Tsumoto, K.
登録日2023-12-13
公開日2024-10-09
最終更新日2024-12-18
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Structural basis for the ligand promiscuity of the hydroxamate siderophore binding protein FtsB from Streptococcus pyogenes.
Structure, 32, 2024
8XFI
DownloadVisualize
BU of 8xfi by Molmil
High-resolution structure of the siderophore periplasmic binding protein FtsB from Streptococcus pyogenes with ferrioxamine E bound (crystal form 2)
分子名称: (8E)-6,17,28-trihydroxy-1,6,12,17,23,28-hexaazacyclotritriacont-8-ene-2,5,13,16,24,27-hexone, CHLORIDE ION, FE (III) ION, ...
著者Caaveiro, J.M.M, Fernandez-Perez, J, Tsumoto, K.
登録日2023-12-13
公開日2024-10-09
最終更新日2024-12-18
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structural basis for the ligand promiscuity of the hydroxamate siderophore binding protein FtsB from Streptococcus pyogenes.
Structure, 32, 2024
8XFA
DownloadVisualize
BU of 8xfa by Molmil
Structure of the siderophore periplasmic binding protein FtsB mutant Y137A from Streptococcus pyogenes with ferrioxamine E bound
分子名称: (8E)-6,17,28-trihydroxy-1,6,12,17,23,28-hexaazacyclotritriacont-8-ene-2,5,13,16,24,27-hexone, FE (III) ION, GLYCEROL, ...
著者Caaveiro, J.M.M, Fernandez-Perez, J, Tsumoto, K.
登録日2023-12-13
公開日2024-10-09
最終更新日2024-12-18
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural basis for the ligand promiscuity of the hydroxamate siderophore binding protein FtsB from Streptococcus pyogenes.
Structure, 32, 2024
9JKQ
DownloadVisualize
BU of 9jkq by Molmil
Cryo-EM structure of the METH-bound hTAAR1-Gs complex
分子名称: (2S)-N-methyl-1-phenylpropan-2-amine, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
著者Lin, Y, Wang, J, Shi, F.
登録日2024-09-16
公開日2024-10-16
最終更新日2025-07-23
実験手法ELECTRON MICROSCOPY (2.66 Å)
主引用文献Molecular Mechanisms of Methamphetamine-Induced Addiction via TAAR1 Activation.
J.Med.Chem., 67, 2024
6TW2
DownloadVisualize
BU of 6tw2 by Molmil
Re-refined crystal structure of di-phosphorylated human CLK1 in complex with a novel substituted indole inhibitor
分子名称: Dual specificity protein kinase CLK1, ethyl 3-[(E)-2-amino-1-cyanoethenyl]-6,7-dichloro-1-methyl-1H-indole-2-carboxylate
著者Loll, B, Haltenhof, T, Heyd, F, Wahl, M.C.
登録日2020-01-12
公開日2020-02-05
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献A Conserved Kinase-Based Body-Temperature Sensor Globally Controls Alternative Splicing and Gene Expression.
Mol.Cell, 78, 2020
8XL1
DownloadVisualize
BU of 8xl1 by Molmil
Core region of the human acetyl-CoA carboxylase 1 filament in complex with acetyl-CoA (ACC1-inact)
分子名称: ACETYL COENZYME *A, Acetyl-CoA carboxylase 1
著者Zhou, F.Y, Zhang, Y.Y, Zhou, Q, Hu, Q.
登録日2023-12-25
公開日2024-10-23
実験手法ELECTRON MICROSCOPY (2.57 Å)
主引用文献Filament structures unveil the dynamic organization of human acetyl-CoA carboxylase.
Sci Adv, 10, 2024
6RWJ
DownloadVisualize
BU of 6rwj by Molmil
Crystal Structure of BRD4(1) bound to inhibitor BUG0 (6)
分子名称: Bromodomain-containing protein 4, ~{N},3-dimethyl-4-oxidanylidene-5,6,7,8-tetrahydro-2~{H}-cyclohepta[c]pyrrole-1-carboxamide
著者Huegle, M.
登録日2019-06-05
公開日2020-12-09
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献4-Acyl Pyrroles as Dual BET-BRD7/9 Bromodomain Inhibitors Address BETi Insensitive Human Cancer Cell Lines.
J.Med.Chem., 63, 2020
4NIF
DownloadVisualize
BU of 4nif by Molmil
Heterodimeric structure of ERK2 and RSK1
分子名称: Mitogen-activated protein kinase 1, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Ribosomal protein S6 kinase alpha-1, ...
著者Gogl, G, Remenyi, A.
登録日2013-11-06
公開日2014-11-12
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Structural assembly of the signaling competent ERK2-RSK1 heterodimeric protein kinase complex
Proc.Natl.Acad.Sci.USA, 112, 2015
3N08
DownloadVisualize
BU of 3n08 by Molmil
Crystal Structure of a Putative PhosphatidylEthanolamine-Binding Protein (PEBP) Homolog CT736 from Chlamydia trachomatis D/UW-3/CX
分子名称: CALCIUM ION, CHLORIDE ION, Putative PhosphatidylEthanolamine-Binding Protein (PEBP)
著者Brunzelle, J.S, Wawrzak, Z, Onopriyenko, O, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2010-05-13
公開日2010-07-14
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献1.25 Angstrom Crystal Structure of a Putative PhosphatidylEthanolamine-Binding Protein (PEBP) Homolog CT736 from Chlamydia trachomatis D/UW-3/CX
To be Published
8RP1
DownloadVisualize
BU of 8rp1 by Molmil
Aminodeoxychorismate synthase complex from Escherichia coli, with glutamine added
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Aminodeoxychorismate synthase component 1, Aminodeoxychorismate synthase component 2, ...
著者Sung, S, Franziska, J.F, Schlee, S, Sterner, R, Wilmanns, M.
登録日2024-01-12
公開日2025-01-29
最終更新日2025-05-28
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Activity Regulation of a Glutamine Amidotransferase Bienzyme Complex by Substrate-Induced Subunit Interface Expansion.
Acs Catalysis, 15, 2025
9FLT
DownloadVisualize
BU of 9flt by Molmil
Crystal structure of human Haspin (GSG2) kinase bound to chemical probe MU1920
分子名称: NICKEL (II) ION, Serine/threonine-protein kinase haspin, ~{N}-(1,4-dimethylpyrazol-3-yl)-3-pyridin-4-yl-thieno[3,2-b]pyridin-5-amine
著者Kraemer, A, Paruch, K, Knapp, S, Structural Genomics Consortium (SGC)
登録日2024-06-05
公開日2024-09-11
最終更新日2025-03-26
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Thieno[3,2-b]pyridine: Attractive scaffold for highly selective inhibitors of underexplored protein kinases with variable binding mode.
Angew.Chem.Int.Ed.Engl., 64, 2025
3N2L
DownloadVisualize
BU of 3n2l by Molmil
2.1 Angstrom resolution crystal structure of an Orotate Phosphoribosyltransferase (pyrE) from Vibrio cholerae O1 biovar eltor str. N16961
分子名称: CHLORIDE ION, Orotate phosphoribosyltransferase
著者Halavaty, A.S, Minasov, G, Shuvalova, L, Dubrovska, I, Winsor, J, Kwon, K, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2010-05-18
公開日2010-06-02
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献2.1 Angstrom resolution crystal structure of an Orotate Phosphoribosyltransferase (pyrE) from Vibrio cholerae O1 biovar eltor str. N16961
To be Published
4NNN
DownloadVisualize
BU of 4nnn by Molmil
yCP in complex with MG132
分子名称: MAGNESIUM ION, N-[(benzyloxy)carbonyl]-L-leucyl-N-[(2S)-1-hydroxy-4-methylpentan-2-yl]-L-leucinamide, Probable proteasome subunit alpha type-7, ...
著者Stein, M.L, Cui, H, Beck, P, Dubiella, C, Voss, C, Krueger, A, Schmidt, B, Groll, M.
登録日2013-11-18
公開日2014-02-12
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Systematic Comparison of Peptidic Proteasome Inhibitors Highlights the alpha-Ketoamide Electrophile as an Auspicious Reversible Lead Motif.
Angew.Chem.Int.Ed.Engl., 53, 2014
8HFI
DownloadVisualize
BU of 8hfi by Molmil
Cryo-EM structure of human norepinephrine transporter NET in the presence of the antidepressant desipramine in an inward-open state at resolution of 2.5 angstrom.
分子名称: 3-(10,11-DIHYDRO-5H-DIBENZO[B,F]AZEPIN-5-YL)-N-METHYLPROPAN-1-AMINE, CHLORIDE ION, Sodium-dependent noradrenaline transporter
著者Tan, J, Xiao, Y, Kong, F, Lei, J, Yuan, Y, Yan, C.
登録日2022-11-10
公開日2024-05-15
最終更新日2025-07-16
実験手法ELECTRON MICROSCOPY (2.5 Å)
主引用文献Molecular basis of human noradrenaline transporter reuptake and inhibition.
Nature, 632, 2024
6RS4
DownloadVisualize
BU of 6rs4 by Molmil
Structure of tabersonine synthase - an alpha-beta hydrolase from Catharanthus roseus
分子名称: 1,2-ETHANEDIOL, Tabersonine synthase
著者Caputi, L, Franke, J, Bussey, K, Farrow, S.C, Curcino Vieira, I.J, Stevenson, C.E.M, Lawson, D.M, O'Connor, S.E.
登録日2019-05-21
公開日2020-03-04
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Structural basis of cycloaddition in biosynthesis of iboga and aspidosperma alkaloids.
Nat.Chem.Biol., 16, 2020
5JJ6
DownloadVisualize
BU of 5jj6 by Molmil
Fic-1 (aa134 - 508) from C. elegans
分子名称: Adenosine monophosphate-protein transferase FICD homolog, SULFATE ION
著者Cruz, V.E, Schwartz, T.U.
登録日2016-04-22
公開日2016-06-01
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.907 Å)
主引用文献Fic-1 dimer
To be published
8HVZ
DownloadVisualize
BU of 8hvz by Molmil
Crystal structure of SARS-Cov-2 main protease V186F mutant in complex with PF07304814
分子名称: 3C-like proteinase nsp5, [(3~{S})-3-[[(2~{S})-2-[(4-methoxy-1~{H}-indol-2-yl)carbonylamino]-4-methyl-pentanoyl]amino]-2-oxidanylidene-4-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]butyl] dihydrogen phosphate
著者Zou, X.F, Zhang, J, Li, J.
登録日2022-12-28
公開日2024-01-17
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structures of main protease (M pro ) mutants of SARS-CoV-2 variants bound to PF-07304814.
Mol Biomed, 4, 2023
7BWV
DownloadVisualize
BU of 7bwv by Molmil
Crystal structure of S. thermophilus NFeoB E67A bound to GDP.AlF4-
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Batra, S, Prakash, B.
登録日2020-04-16
公開日2021-04-21
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Crystal structure of S. thermophilus NFeoB E67A bound to GDP.AlF4-
To be published
7VB6
DownloadVisualize
BU of 7vb6 by Molmil
Crystal structure of hydroxynitrile lyase from Linum usitatissium complexed with (R)-2-hydroxy-2-methylbutanenitrile
分子名称: (2R)-2-methyl-2-oxidanyl-butanenitrile, 1,2-ETHANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
著者Zheng, D, Nakabayashi, M, Asano, Y.
登録日2021-08-30
公開日2022-02-09
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Structural characterization of Linum usitatissimum hydroxynitrile lyase: A new cyanohydrin decomposition mechanism involving a cyano-zinc complex.
J.Biol.Chem., 298, 2022

245011

件を2025-11-19に公開中

PDB statisticsPDBj update infoContact PDBjnumon