PDB: 97138 件ウェブページステータス検索Chemie searchBIRD

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5VHW	GluA2-0xGSG1L bound to ZK 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Glutamate receptor 2,Germ cell-specific gene 1-like protein, {[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2H)-yl]methyl}phosphonic acid 著者 Twomey, E.C, Yelshanskaya, M.V, Grassucci, R.A, Frank, J, Sobolevsky, A.I. 登録日 2017-04-13 公開日 2017-05-03 最終更新日 2020-07-29 実験手法 ELECTRON MICROSCOPY (7.8 Å) 主引用文献 Structural Bases of Desensitization in AMPA Receptor-Auxiliary Subunit Complexes. Neuron, 94, 2017
2BQV	HIV-1 protease in complex with inhibitor AHA455 分子名称: 6-AMINO HEXANOIC ACID, HIV-1 PROTEASE 著者 Unge, T, Ekegren, J.K, Schenk, H.V, Zreik Safa, M, Wallberg, H, Samuelsson, B, Hallberg, A. 登録日 2005-04-28 公開日 2005-12-14 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 A New Class of HIV-1 Protease Inhibitors Containing a Tertiary Alcohol in the Transition-State Mimicking Scaffold. J.Med.Chem., 48, 2005
7ZU9	CRYSTAL STRUCTURE OF THE C89A_C113A GMP SYNTHETASE INACTIVE DOUBLE MUTANT FROM PLASMODIUM FALCIPARUM 分子名称: Glutamine amidotransferase 著者 Ballut, L, Violot, S, Aghajari, N. 登録日 2022-05-11 公開日 2022-08-10 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Tertiary and Quaternary Structure Organization in GMP Synthetases: Implications for Catalysis. Biomolecules, 12, 2022
5VQD	Beta-glucoside phosphorylase BglX 分子名称: Beta-glucoside phosphorylase BglX, GLYCEROL 著者 Patel, A, Mark, B.L. 登録日 2017-05-08 公開日 2018-01-17 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural and mechanistic analysis of a beta-glycoside phosphorylase identified by screening a metagenomic library. J. Biol. Chem., 293, 2018
6ZYT	Monomeric streptavidin with a conjugated biotinylated pyrrolidine 分子名称: 5-((3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)-N-((S)-pyrrolidin-3-yl)pentanamide, SULFATE ION, Streptavidin/Rhizavidin Hybrid 著者 Nodling, A.R, Lipka-Lloyd, M, Tsai, Y.H, Rizkallah, P, Luk, L.Y.P, Jin, Y. 登録日 2020-08-03 公開日 2021-08-18 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 The role of streptavidin and its variants in catalysis by biotinylated secondary amines. Org.Biomol.Chem., 19, 2021
5OLS	Rhamnogalacturonan lyase 分子名称: 4-deoxy-beta-L-threo-hex-4-enopyranuronic acid-(1-2)-alpha-L-rhamnopyranose-(1-4)-beta-D-galactopyranuronic acid, CALCIUM ION, Rhamnogalacturonan lyase, ... 著者 Basle, A, Luis, A.S, Gilbert, H.J. 登録日 2017-07-28 公開日 2017-11-29 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Dietary pectic glycans are degraded by coordinated enzyme pathways in human colonic Bacteroides. Nat Microbiol, 3, 2018
5VHZ	GluA2-2xGSG1L bound to L-Quisqualate 分子名称: (S)-2-AMINO-3-(3,5-DIOXO-[1,2,4]OXADIAZOLIDIN-2-YL)-PROPIONIC ACID, Glutamate receptor 2,Germ cell-specific gene 1-like protein 著者 Twomey, E.C, Yelshanskaya, M.V, Grassucci, R.A, Frank, J, Sobolevsky, A.I. 登録日 2017-04-13 公開日 2017-05-03 最終更新日 2017-11-08 実験手法 ELECTRON MICROSCOPY (8.4 Å) 主引用文献 Structural Bases of Desensitization in AMPA Receptor-Auxiliary Subunit Complexes. Neuron, 94, 2017
5ILP	H64Q sperm whale myoglobin with a Fe-tolyl moiety 分子名称: GLYCEROL, Myoglobin, SULFATE ION, ... 著者 Wang, B, Thomas, L.M, Richter-Addo, G.B. 登録日 2016-03-04 公開日 2016-09-21 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.88 Å) 主引用文献 Organometallic myoglobins: Formation of Fe-carbon bonds and distal pocket effects on aryl ligand conformations. J. Inorg. Biochem., 164, 2016
5US3	Heterogeneous-backbone Foldamer Mimic of the Sp1-3 Zinc Finger 分子名称: Heterogeneous-Backbone Variant of the Sp1-3 Zinc Finger: N-Me-Ala3, N-Me-Arg10, beta-3-Asp15, ... 著者 George, K.L, Horne, W.S. 登録日 2017-02-13 公開日 2017-05-31 最終更新日 2024-07-10 実験手法 SOLUTION NMR 主引用文献 Heterogeneous-Backbone Foldamer Mimics of Zinc Finger Tertiary Structure. J. Am. Chem. Soc., 139, 2017
8IL6	Thanatin PM15 with LPS 分子名称: Thanatin PM15 著者 Swaleeha, A, Bhattacharyya, S. 登録日 2023-03-01 公開日 2024-02-07 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Thanatin PM15 with LPS To Be Published
8Y9P	Crystal structure of bacterial activating sulfotransferase SgdX2 分子名称: ADENOSINE-3'-5'-DIPHOSPHATE, GLYCEROL, SgdX2 著者 Mori, T, Teramoto, T, Kakuta, Y. 登録日 2024-02-07 公開日 2024-05-15 実験手法 X-RAY DIFFRACTION (1.64 Å) 主引用文献 Crystal structure of activating sulfotransferase SgdX2 involved in biosynthesis of secondary metabolite sungeidine. Biochem.Biophys.Res.Commun., 711, 2024
5FPS	Structure of hepatitis C virus (HCV) full-length NS3 complex with small-molecule ligand 3-aminobenzene-1,2-dicarboxylic acid (AT1246) in an alternate binding site. 分子名称: 3-AMINOBENZENE-1,2-DICARBOXYLIC ACID, HEPATITIS C VIRUS FULL-LENGTH NS3 COMPLEX 著者 Jhoti, H, Ludlow, R.F, Saini, H.K, Tickle, I.J, Verdonk, M, Williams, P.A. 登録日 2015-12-02 公開日 2015-12-23 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.68 Å) 主引用文献 Detection of Secondary Binding Sites in Proteins Using Fragment Screening. Proc.Natl.Acad.Sci.USA, 112, 2015
8TMA	Antibody N3-1 bound to RBD in the up conformation 分子名称: N3-1 Fab heavy chain, N3-1 Fab light chain, Spike glycoprotein 著者 Hsieh, C.-L, McLellan, J.S. 登録日 2023-07-29 公開日 2024-01-17 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 SARS-COV-2 Omicron variants conformationally escape a rare quaternary antibody binding mode. Commun Biol, 6, 2023
7SG4	Structure of SARS-CoV S protein in complex with Receptor Binding Domain antibody DH1047 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, DH1047 Heavy chain, DH1047 light chain, ... 著者 Gobeil, S, Acharya, P. 登録日 2021-10-04 公開日 2021-11-10 最終更新日 2022-02-09 実験手法 ELECTRON MICROSCOPY (3.43 Å) 主引用文献 A broadly cross-reactive antibody neutralizes and protects against sarbecovirus challenge in mice. Sci Transl Med, 14, 2022
8TM1	Antibody N3-1 bound to RBDs in the up and down conformations 分子名称: N3-1 Fab heavy chain, N3-1 Fab light chain, Spike glycoprotein 著者 Hsieh, C.-L, McLellan, J.S. 登録日 2023-07-27 公開日 2024-01-17 実験手法 ELECTRON MICROSCOPY (2.79 Å) 主引用文献 SARS-COV-2 Omicron variants conformationally escape a rare quaternary antibody binding mode. Commun Biol, 6, 2023
8JTJ	Cryo-EM structure of GeoCas9-sgRNA-dsDNA ternary complex 分子名称: CRISPR-associated endonuclease Cas9, DNA (29-MER), DNA (5'-D(P*GP*GP*GP*CP*GP*CP*GP*AP*A)-3'), ... 著者 Shen, P.P, Liu, B.B, Li, X, Zhang, L.L, Chen, C.-C, Guo, R.-T. 登録日 2023-06-21 公開日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.08 Å) 主引用文献 Cryo-EM structure of GeoCas9-sgRNA-DNA ternary complex To Be Published
8IL2	Free Thanatin PM15 分子名称: Free Thanatin PM15 著者 Swaleeha, A, Bhattacharyya, S. 登録日 2023-03-01 公開日 2024-02-07 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Free Thanatin PM15 To Be Published
5D0K	Structure of UbE2D2:RNF165:Ub complex 分子名称: Polyubiquitin-B, RING finger protein 165, Ubiquitin-conjugating enzyme E2 D2, ... 著者 Wright, J.D, Day, C.L, Mace, P.D. 登録日 2015-08-03 公開日 2015-12-09 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Secondary ubiquitin-RING docking enhances Arkadia and Ark2C E3 ligase activity. Nat.Struct.Mol.Biol., 23, 2016
5FTI	Crystal structure of the GluA2 K738M-T744K LBD in complex with glutamate (lithium form) 分子名称: GLUTAMATE RECEPTOR 2, GLUTAMIC ACID, GLYCEROL, ... 著者 Nayeem, N, Green, T. 登録日 2016-01-13 公開日 2016-02-03 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 Distinct Structural Pathways Coordinate the Activation of Ampa Receptor-Auxiliary Subunit Complexes. Neuron, 89, 2016
8A9M	Hippeastrum hybrid agglutinin, HHA, complex with beta-mannose 分子名称: Agglutinin, PHOSPHATE ION, beta-D-mannopyranose 著者 Rizkallah, P.J. 登録日 2022-06-28 公開日 2022-10-05 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 X-ray structure solution of amaryllis lectin by molecular replacement with only 4% of the total diffracting matter. Acta Crystallogr D Biol Crystallogr, 52, 1996
5D0I	Structure of RING finger protein 165 分子名称: RING finger protein 165, SULFATE ION, ZINC ION 著者 Wright, J.D, Day, C.L, Mace, P.D. 登録日 2015-08-03 公開日 2015-12-09 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Secondary ubiquitin-RING docking enhances Arkadia and Ark2C E3 ligase activity. Nat.Struct.Mol.Biol., 23, 2016
5D0M	Structure of UbE2D2:RNF165:Ub complex 分子名称: PHOSPHATE ION, Polyubiquitin-B, RING finger protein 165, ... 著者 Wright, J.D, Day, C.L, Mace, P.D. 登録日 2015-08-03 公開日 2015-12-09 最終更新日 2016-01-20 実験手法 X-RAY DIFFRACTION (1.913 Å) 主引用文献 Secondary ubiquitin-RING docking enhances Arkadia and Ark2C E3 ligase activity. Nat.Struct.Mol.Biol., 23, 2016
5Y60	V/A-type ATPase/synthase from Thermus thermophilus, rotational state 3. 分子名称: ADENOSINE-5'-DIPHOSPHATE, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ... 著者 Nakanishi, A, Kishikawa, J, Tamakoshi, M, Mitsuoka, K, Yokoyama, K. 登録日 2017-08-10 公開日 2018-01-17 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (7.5 Å) 主引用文献 Cryo EM structure of intact rotary H+-ATPase/synthase from Thermus thermophilus Nat Commun, 9, 2018
5IKS	Wild-type sperm whale myoglobin with a Fe-phenyl moiety 分子名称: GLYCEROL, Myoglobin, SULFATE ION, ... 著者 Wang, B, Thomas, L.M, Richter-Addo, G.B. 登録日 2016-03-03 公開日 2016-09-21 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.87 Å) 主引用文献 Organometallic myoglobins: Formation of Fe-carbon bonds and distal pocket effects on aryl ligand conformations. J. Inorg. Biochem., 164, 2016
2B5I	cytokine receptor complex 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Cytokine receptor common gamma chain, ... 著者 Wang, X, Rickert, M, Garcia, K.C. 登録日 2005-09-28 公開日 2005-11-29 最終更新日 2021-10-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure of the quaternary complex of interleukin-2 with its alpha, beta, and gammac receptors. Science, 310, 2005

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