PDB: 219886 件ウェブページステータス検索Chemie searchBIRD

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8UT8	CryoEM structure of A/Shanghai/1/2013 H7 in complex with polyclonal Fab from mice immunized with H7 stem nanoparticles-15 days post-immunization 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Huang, J, Han, J, Ward, A.B. 登録日 2023-10-30 公開日 2024-05-08 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Eliciting a single amino acid change by vaccination generates antibody protection against group 1 and group 2 influenza A viruses. Immunity, 57, 2024
3J9O	CryoEM structure of a type VI secretion system 分子名称: Intracellular growth locus protein A, Intracellular growth locus protein B 著者 Clemens, D.L, Ge, P, Lee, B.-Y, Horwitz, M.A, Zhou, Z.H. 登録日 2015-02-11 公開日 2015-03-18 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Atomic Structure of T6SS Reveals Interlaced Array Essential to Function. Cell(Cambridge,Mass.), 160, 2015
3JV5	Crystal structure of the dimerization domains p52 homodimer 分子名称: Nuclear factor NF-kappa-B p100 subunit 著者 Vu, D, Huang, D.B, Ghosh, G. 登録日 2009-09-15 公開日 2010-11-24 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Instability of the RelB dimerization domain is functionally important To be Published
6N1O	Oxidized rat cytochrome c mutant (S47E) 分子名称: 1,2-ETHANEDIOL, Cytochrome c, somatic, ... 著者 Huttemann, M, Edwards, B.F.P. 登録日 2018-11-09 公開日 2019-10-23 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Serine-47 phosphorylation of cytochromecin the mammalian brain regulates cytochromecoxidase and caspase-3 activity. Faseb J., 33, 2019
5TJN	Crystal structure of GTB + B trisaccharide (native) 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Histo-blood group ABO system transferase, alpha-L-fucopyranose-(1-2)-[alpha-D-galactopyranose-(1-3)]octyl beta-D-galactopyranoside 著者 Legg, M.S.G, Gagnon, S.M.L, Evans, S.V. 登録日 2016-10-04 公開日 2017-06-14 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.47 Å) 主引用文献 High-resolution crystal structures and STD NMR mapping of human ABO(H) blood group glycosyltransferases in complex with trisaccharide reaction products suggest a molecular basis for product release. Glycobiology, 27, 2017
2IBM	A novel dimer interface and conformational changes revealed by an X-ray structure of B. subtilis SecA 分子名称: ADENOSINE-5'-DIPHOSPHATE, Preprotein translocase secA subunit 著者 Zimmer, J, Li, W, Rapoport, T.A. 登録日 2006-09-11 公開日 2006-11-14 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 A Novel Dimer Interface and Conformational Changes Revealed by an X-ray Structure of B. subtilis SecA. J.Mol.Biol., 364, 2006
6CBO	X-ray structure of GenB1 from micromonospora echinospora in complex with neamine and PLP (as the external aldimine) 分子名称: (1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2-amino-2,6-dideoxy-6-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-alpha-D-glucopyranoside, 1,2-ETHANEDIOL, 3[N-MORPHOLINO]PROPANE SULFONIC ACID, ... 著者 Dow, G.T, Thoden, J.B, Holden, H.M. 登録日 2018-02-03 公開日 2018-02-21 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 The three-dimensional structure of NeoB: An aminotransferase involved in the biosynthesis of neomycin. Protein Sci., 27, 2018
1VMH	Crystal structure of an uncharacterized conserved protein yjbq/upf0047 family, ortholog yugu b.subtilis (ca_c0907) from clostridium acetobutylicum at 1.31 A resolution 分子名称: SODIUM ION, Uncharacterized conserved protein YjbQ/UPF0047 family, ortholog yugU B.subtilis 著者 Joint Center for Structural Genomics (JCSG) 登録日 2004-09-24 公開日 2004-10-05 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.31 Å) 主引用文献 Crystal structure of Uncharacterized conserved protein YjbQ/UPF0047 family, ortholog yugU B.subtilis (15023806) from Clostridium acetobutylicum at 1.31 A resolution To be published
4NHH	Structure of 2G12 IgG Dimer 分子名称: 2G12 IgG dimer heavy chain, 2G12 IgG dimer light chain, Hepatitis B virus receptor binding protein 著者 Wu, Y, West Jr, A.P, Kim, H.J, Thornton, M.E, Ward, A.B, Bjorkman, P.J. 登録日 2013-11-05 公開日 2014-02-26 実験手法 X-RAY DIFFRACTION (6.5 Å) 主引用文献 Structural basis for enhanced HIV-1 neutralization by a dimeric immunoglobulin G form of the glycan-recognizing antibody 2G12. Cell Rep, 5, 2013
1KAZ	70KD HEAT SHOCK COGNATE PROTEIN ATPASE DOMAIN, K71E MUTANT 分子名称: 70KD HEAT SHOCK COGNATE PROTEIN, ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, ... 著者 O'Brien, M.C, Flaherty, K.M, Mckay, D.B. 登録日 1996-04-15 公開日 1996-11-08 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Lysine 71 of the chaperone protein Hsc70 Is essential for ATP hydrolysis. J.Biol.Chem., 271, 1996
1KAX	70KD HEAT SHOCK COGNATE PROTEIN ATPASE DOMAIN, K71M MUTANT 分子名称: 70KD HEAT SHOCK COGNATE PROTEIN, ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, ... 著者 O'Brien, M.C, Flaherty, K.M, Mckay, D.B. 登録日 1996-04-15 公開日 1996-11-08 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Lysine 71 of the chaperone protein Hsc70 Is essential for ATP hydrolysis. J.Biol.Chem., 271, 1996
6Z1H	Ancestral glycosidase (family 1) 分子名称: ANCESTRAL RECONSTRUCTED GLYCOSIDASE, GLYCEROL, ISOPROPYL ALCOHOL, ... 著者 Gavira, J.A, Risso, V.A, Sanchez-Ruiz, J.M, Gamiz-Arco, G, Gutierrez-Rus, L, Ibarra-Molero, B, Hoshino, Y, Petrovic, D, Romero-Rivera, A, Seelig, B, Kamerlin, S.C.L, Gaucher, E.A. 登録日 2020-05-13 公開日 2020-07-22 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Heme-binding enables allosteric modulation in an ancient TIM-barrel glycosidase. Nat Commun, 12, 2021
2FCI	Structural basis for the requirement of two phosphotyrosines in signaling mediated by Syk tyrosine kinase 分子名称: C-termainl SH2 domain from phospholipase C-gamma-1 comprising residues 663-759, Doubly phosphorylated peptide derived from Syk kinase comprising residues 338-350 著者 Groesch, T.D, Zhou, F, Mattila, S, Geahlen, R.L, Post, C.B. 登録日 2005-12-12 公開日 2006-01-31 最終更新日 2023-11-15 実験手法 SOLUTION NMR 主引用文献 Structural basis for the requirement of two phosphotyrosine residues in signaling mediated by syk tyrosine kinase J.Mol.Biol., 356, 2006
1VRF	SOLUTION STRUCTURE OF COMPONENT IV GLYCERA DIBRANCHIATA MONOMERIC HEMOGLOBIN-CO 分子名称: CARBON MONOXIDE, PROTEIN (GLOBIN, MONOMERIC COMPONENT M-IV), ... 著者 Volkman, B.F, Alam, S.L, Satterlee, J.D, Markley, J.L. 登録日 1999-03-25 公開日 1999-04-01 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 Solution structure and backbone dynamics of component IV Glycera dibranchiata monomeric hemoglobin-CO. Biochemistry, 37, 1998
6C9O	Selenomethionine mutant (V29Sem) of protein GB1 examined by X-ray diffraction 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Immunoglobulin G-binding protein G 著者 Chen, Q. 登録日 2018-01-28 公開日 2019-07-10 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 77Se NMR Probes the Protein Environment of Selenomethionine. J.Phys.Chem.B, 2020
1KIP	FV MUTANT Y(B 32)A (VH DOMAIN) OF MOUSE MONOCLONAL ANTIBODY D1.3 COMPLEXED WITH HEN EGG WHITE LYSOZYME 分子名称: LYSOZYME, MONOCLONAL ANTIBODY D1.3 著者 Fields, B.A, Poljak, R.J, Mariuzza, R.A. 登録日 1996-10-23 公開日 1996-12-23 最終更新日 2024-06-05 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Hydrogen bonding and solvent structure in an antigen-antibody interface. Crystal structures and thermodynamic characterization of three Fv mutants complexed with lysozyme. Biochemistry, 35, 1996
7RSO	AMC016 SOSIP.v4.2 in complex with PGV04 Fab 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, AMC016 gp120, ... 著者 Bader, D.L.V, Cottrell, C.A, Ward, A.B. 登録日 2021-08-11 公開日 2021-09-15 最終更新日 2022-01-26 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 The Glycan Hole Area of HIV-1 Envelope Trimers Contributes Prominently to the Induction of Autologous Neutralization. J.Virol., 96, 2022
1KIQ	FV MUTANT Y(B 101)F (VH DOMAIN) OF MOUSE MONOCLONAL ANTIBODY D1.3 COMPLEXED WITH HEN EGG WHITE LYSOZYME 分子名称: LYSOZYME, MONOCLONAL ANTIBODY D1.3 著者 Fields, B.A, Poljak, R.J, Mariuzza, R.A. 登録日 1996-10-23 公開日 1996-12-23 最終更新日 2024-06-05 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Hydrogen bonding and solvent structure in an antigen-antibody interface. Crystal structures and thermodynamic characterization of three Fv mutants complexed with lysozyme. Biochemistry, 35, 1996
7RSN	AMC018 SOSIP.v4.2 in complex with PGV04 Fab 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, AMC018 gp120, ... 著者 Cottrell, C.A, Ward, A.B. 登録日 2021-08-11 公開日 2021-09-15 最終更新日 2022-01-26 実験手法 ELECTRON MICROSCOPY (3.49 Å) 主引用文献 The Glycan Hole Area of HIV-1 Envelope Trimers Contributes Prominently to the Induction of Autologous Neutralization. J.Virol., 96, 2022
6IZ5	Crystal Structure Analysis of a Eukaryotic Membrane Protein 分子名称: Trimeric intracellular cation channel type B-B 著者 Li, D, Su, M, Hendrickson, W.A, Chen, Y.H. 登録日 2018-12-18 公開日 2019-05-01 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.701 Å) 主引用文献 Structural basis for activity of TRIC counter-ion channels in calcium release. Proc.Natl.Acad.Sci.USA, 116, 2019
6G6W	HUMAN PI3KDELTA IN COMPLEX WITH LIGAND LASW1976 分子名称: Phosphatidylinositol 3-kinase regulatory subunit alpha, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform, ~{N}-[3-[4-[[(1~{S})-1-(5-methyl-4-oxidanylidene-3-phenyl-pyrrolo[2,1-f][1,2,4]triazin-2-yl)ethyl]amino]-7~{H}-pyrrolo[ 2,3-d]pyrimidin-5-yl]-5-oxidanyl-phenyl]methanesulfonamide 著者 Segarra, V, Hernandez, B, Jestel, A, Mortel, M, Nagel, S. 登録日 2018-04-03 公開日 2018-11-07 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.72 Å) 主引用文献 Discovery of a Novel Inhaled PI3K delta Inhibitor for the Treatment of Respiratory Diseases. J. Med. Chem., 61, 2018
6IZ6	Crystal Structure Analysis of TRIC counter-ion channels in calcium release 分子名称: CALCIUM ION, Trimeric intracellular cation channel type B-B 著者 Liu, X.L, Wang, X.H, Su, M, Hendrickson, W.A, Chen, Y.H. 登録日 2018-12-18 公開日 2019-05-01 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.293 Å) 主引用文献 Structural basis for activity of TRIC counter-ion channels in calcium release. Proc.Natl.Acad.Sci.USA, 116, 2019
3PBY	Crystal structure of the mutant L123S of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with 6-azauridine 5'-monophosphate 分子名称: 6-AZA URIDINE 5'-MONOPHOSPHATE, GLYCEROL, Orotidine 5'-monophosphate decarboxylase 著者 Fedorov, A.A, Fedorov, E.V, Iiams, V, Wood, B.M, Gerlt, J.A, Almo, S.C. 登録日 2010-10-21 公開日 2011-09-21 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Mechanism of the orotidine 5'-monophosphate decarboxylase-catalyzed reaction: importance of residues in the orotate binding site. Biochemistry, 50, 2011
2CBN	Crystal structure of ZipD from Escherichia coli 分子名称: RIBONUCLEASE Z, ZINC ION 著者 Pohl, E, Meyer-Klaucke, W, Kostelecky, B. 登録日 2006-01-06 公開日 2006-02-15 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 The Crystal Structure of the Zinc Phosphodiesterase from Escherichia Coli Provides Insight Into Function and Cooperativity of Trnase Z-Family Proteins. J.Bacteriol., 188, 2006
3PBW	Crystal structure of the mutant L123N of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with 6-azauridine 5'-monophosphate 分子名称: 6-AZA URIDINE 5'-MONOPHOSPHATE, Orotidine 5'-monophosphate decarboxylase 著者 Fedorov, A.A, Fedorov, E.V, Iiams, V, Wood, B.M, Gerlt, J.A, Almo, S.C. 登録日 2010-10-21 公開日 2011-09-21 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Mechanism of the orotidine 5'-monophosphate decarboxylase-catalyzed reaction: importance of residues in the orotate binding site. Biochemistry, 50, 2011

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