PDB: 1573 件ウェブページステータス検索Chemie searchBIRD

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2WDT	Crystal structure of Plasmodium falciparum UCHL3 in complex with the suicide inhibitor UbVME 分子名称: CHLORIDE ION, UBIQUITIN, UBIQUITIN CARBOXYL-TERMINAL HYDROLASE L3 著者 Weihofen, W.A, Artavanis-Tsakonas, K, Gaudet, R, Ploegh, H.L. 登録日 2009-03-26 公開日 2009-12-29 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Characterization and Structural Studies of the Plasmodium Falciparum Ubiquitin and Nedd8 Hydrolase Uchl3. J.Biol.Chem., 285, 2010
3DCG	Crystal Structure of the HIV Vif BC-box in Complex with Human ElonginB and ElonginC 分子名称: Transcription elongation factor B polypeptide 1, Transcription elongation factor B polypeptide 2, Virion infectivity factor 著者 Stanley, B.J, Ehrlich, E.S, Short, L, Yu, Y, Xiao, Z, Yu, X.-F, Xiong, Y. 登録日 2008-06-03 公開日 2008-07-08 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural insight into the human immunodeficiency virus Vif SOCS box and its role in human E3 ubiquitin ligase assembly J.Virol., 82, 2008
3DBL	Structural Dissection of a Gating Mechanism Preventing Misactivation of Ubiquitin by NEDD8's E1 (APPBP1-UBA3Arg190wt-NEDD8Ala72Gln) 分子名称: NEDD8, NEDD8-activating enzyme E1 catalytic subunit, NEDD8-activating enzyme E1 regulatory subunit, ... 著者 Souphron, J, Schulman, B.A. 登録日 2008-06-01 公開日 2008-08-12 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structural dissection of a gating mechanism preventing misactivation of ubiquitin by NEDD8's E1. Biochemistry, 47, 2008
3DBR	Structural Dissection of a Gating Mechanism Preventing Misactivation of Ubiquitin by NEDD8's E1 (APPBP1-UBA3Arg190Gln-NEDD8Ala72Arg) 分子名称: NEDD8, NEDD8-activating enzyme E1 catalytic subunit, NEDD8-activating enzyme E1 regulatory subunit, ... 著者 Souphron, J, Schulman, B.A. 登録日 2008-06-02 公開日 2008-08-12 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3.05 Å) 主引用文献 Structural dissection of a gating mechanism preventing misactivation of ubiquitin by NEDD8's E1. Biochemistry, 47, 2008
2XBB	Nedd4 HECT:Ub complex 分子名称: E3 UBIQUITIN-PROTEIN LIGASE NEDD4, GLYCEROL, UBIQUITIN 著者 Maspero, E, Cecatiello, V, Musacchio, A, Polo, S, Pasqualato, S. 登録日 2010-04-08 公開日 2011-03-23 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.68 Å) 主引用文献 Structure of the Hect:Ubiquitin Complex and its Role in Ubiquitin Chain Elongation Embo Rep., 12, 2011
1NBF	Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde 分子名称: Ubiquitin aldehyde, Ubiquitin carboxyl-terminal hydrolase 7 著者 Hu, M, Li, P, Li, M, Li, W, Yao, T, Wu, J.-W, Gu, W, Cohen, R.E, Shi, Y. 登録日 2002-12-02 公開日 2003-01-07 最終更新日 2018-10-03 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde Cell(Cambridge,Mass.), 111, 2002
1P3Q	Mechanism of Ubiquitin Recognition by the CUE Domain of VPS9 分子名称: Ubiquitin, Vacuolar protein sorting-associated protein VPS9 著者 Prag, G, Misra, S, Jones, E.A, Ghirlando, R, Davies, B.A, Horazdovsky, B.F, Hurley, J.H. 登録日 2003-04-18 公開日 2003-06-24 最終更新日 2021-11-10 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Mechanism of Ubiquitin Recognition by the CUE Domain of Vps9p. Cell(Cambridge,Mass.), 113, 2003
1Q0W	Solution structure of Vps27 amino-terminal UIM-ubiquitin complex 分子名称: Ubiquitin, Vacuolar protein sorting-associated protein VPS27 著者 Swanson, K.A, Kang, R.S, Stamenova, S.D, Hicke, L, Radhakrishnan, I. 登録日 2003-07-17 公開日 2003-10-07 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution Structure of Vps27 UIM-Ubiquitin Complex Important for Endosomal Sorting and Receptor Downregulation Embo J., 22, 2003
1P9D	High-resolution structure of the complex of HHR23A ubiquitin-like domain and the C-terminal ubiquitin-interacting motif of proteasome subunit S5a 分子名称: 26S proteasome non-ATPase regulatory subunit 4, UV excision repair protein RAD23 homolog A 著者 Mueller, T.D, Feigon, J. 登録日 2003-05-10 公開日 2003-10-07 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structural determinants for the binding of ubiquitin-like domains to the proteasome. Embo J., 22, 2003
1OTR	Solution Structure of a CUE-Ubiquitin Complex 分子名称: Ubiquitin, protein Cue2 著者 Kang, R.S, Daniels, C.M, Salerno, W.J, Radhakrishnan, I. 登録日 2003-03-22 公開日 2003-06-24 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution Structure of a CUE-Ubiquitin Complex Reveals a Conserved Mode of Ubiquitin Binding Cell(Cambridge,Mass.), 113, 2003
1OQY	Structure of the DNA repair protein hHR23a 分子名称: UV excision repair protein RAD23 homolog A 著者 Walters, K.J, Lech, P.J, Goh, A.M, Wang, Q, Howley, P.M. 登録日 2003-03-11 公開日 2003-10-21 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 DNA-repair protein hHR23a alters its protein structure upon binding proteasomal subunit S5a Proc.Natl.Acad.Sci.USA, 100, 2003
3LDZ	Crystal structure of human STAM1 VHS domain in complex with ubiquitin 分子名称: Signal transducing adapter molecule 1, Ubiquitin 著者 Ren, X, Hurley, J.H. 登録日 2010-01-13 公開日 2010-03-02 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 VHS domains of ESCRT-0 cooperate in high-avidity binding to polyubiquitinated cargo. Embo J., 29, 2010
3M63	Crystal structure of Ufd2 in complex with the ubiquitin-like (UBL) domain of Dsk2 分子名称: PENTAETHYLENE GLYCOL, POTASSIUM ION, Ubiquitin conjugation factor E4, ... 著者 Haenzelmann, P, Schindelin, H. 登録日 2010-03-15 公開日 2010-04-28 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 The yeast E4 ubiquitin ligase Ufd2 interacts with the ubiquitin-like domains of Rad23 and Dsk2 via a novel and distinct ubiquitin-like binding domain. J.Biol.Chem., 285, 2010
3M62	Crystal structure of Ufd2 in complex with the ubiquitin-like (UBL) domain of Rad23 分子名称: PENTAETHYLENE GLYCOL, POTASSIUM ION, UV excision repair protein RAD23, ... 著者 Haenzelmann, P, Schindelin, H. 登録日 2010-03-15 公開日 2010-04-28 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 The yeast E4 ubiquitin ligase Ufd2 interacts with the ubiquitin-like domains of Rad23 and Dsk2 via a novel and distinct ubiquitin-like binding domain. J.Biol.Chem., 285, 2010
3MHS	Structure of the SAGA Ubp8/Sgf11/Sus1/Sgf73 DUB module bound to ubiquitin aldehyde 分子名称: 1,2-ETHANEDIOL, GLYCEROL, Protein SUS1, ... 著者 Samara, N.L, Datta, A.B, Berndsen, C.E, Zhang, X, Yao, T, Cohen, R.E, Wolberger, C. 登録日 2010-04-08 公開日 2010-04-21 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.89 Å) 主引用文献 Structural insights into the assembly and function of the SAGA deubiquitinating module. Science, 328, 2010
3MTN	Usp21 in complex with a ubiquitin-based, USP21-specific inhibitor 分子名称: CHLORIDE ION, GLYCEROL, UBIQUITIN VARIANT UBV.21.4, ... 著者 Walker, J.R, Avvakumov, G.V, Xue, S, Li, Y, Ernst, A, Sidhu, S, Weigelt, J, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC) 登録日 2010-04-30 公開日 2010-06-09 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 A strategy for modulation of enzymes in the ubiquitin system. Science, 339, 2013
3N3K	The catalytic domain of USP8 in complex with a USP8 specific inhibitor 分子名称: Ubiquitin, Ubiquitin carboxyl-terminal hydrolase 8, ZINC ION 著者 Walker, J.R, Avvakumov, G.V, Xue, S, Li, Y, Allali-Hassani, A, Lam, R, Ernst, A, Sidhu, S, Weigelt, J, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium, Structural Genomics Consortium (SGC) 登録日 2010-05-20 公開日 2010-06-23 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 A strategy for modulation of enzymes in the ubiquitin system. Science, 339, 2013
3NHE	High Resolution Structure (1.26A) of USP2a in Complex with Ubiquitin 分子名称: Ubiquitin, Ubiquitin carboxyl-terminal hydrolase 2, ZINC ION 著者 Schormann, N, DeLucas, L.J, Powell McCombs, D. 登録日 2010-06-14 公開日 2010-06-30 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.26 Å) 主引用文献 High resolution structure of USP2a in complex with ubiquitin To be Published
3O65	Crystal structure of a Josephin-ubiquitin complex: Evolutionary restraints on ataxin-3 deubiquitinating activity 分子名称: Putative ataxin-3-like protein, SODIUM ION, Ubiquitin 著者 Weeks, S.D, Grasty, K.C, Hernandez-Cuebas, L, Loll, P.J. 登録日 2010-07-28 公開日 2010-11-24 最終更新日 2017-11-08 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal Structure of a Josephin-Ubiquitin Complex: EVOLUTIONARY RESTRAINTS ON ATAXIN-3 DEUBIQUITINATING ACTIVITY. J.Biol.Chem., 286, 2011
8JAR	Structure of CRL2APPBP2 bound with RxxGPAA degron (dimer) 分子名称: Amyloid protein-binding protein 2, Cullin-2, Elongin-B, ... 著者 Zhao, S, Zhang, K, Xu, C. 登録日 2023-05-07 公開日 2023-10-18 最終更新日 2023-10-25 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Molecular basis for C-degron recognition by CRL2 APPBP2 ubiquitin ligase. Proc.Natl.Acad.Sci.USA, 120, 2023
8JAL	Structure of CRL2APPBP2 bound with RxxGP degron (dimer) 分子名称: Amyloid protein-binding protein 2, Cullin-2, Elongin-B, ... 著者 Zhao, S, Zhang, K, Xu, C. 登録日 2023-05-06 公開日 2023-10-18 最終更新日 2023-10-25 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Molecular basis for C-degron recognition by CRL2 APPBP2 ubiquitin ligase. Proc.Natl.Acad.Sci.USA, 120, 2023
8JAQ	Structure of CRL2APPBP2 bound with RxxGP degron (tetramer) 分子名称: Amyloid protein-binding protein 2, Cullin-2, E3 ubiquitin-protein ligase RBX1, ... 著者 Zhao, S, Zhang, K, Xu, C. 登録日 2023-05-06 公開日 2023-10-18 最終更新日 2023-10-25 実験手法 ELECTRON MICROSCOPY (3.26 Å) 主引用文献 Molecular basis for C-degron recognition by CRL2 APPBP2 ubiquitin ligase. Proc.Natl.Acad.Sci.USA, 120, 2023
8JAS	Structure of CRL2APPBP2 bound with RxxGPAA degron (tetramer) 分子名称: Amyloid protein-binding protein 2, Cullin-2, E3 ubiquitin-protein ligase RBX1, ... 著者 Zhao, S, Zhang, K, Xu, C. 登録日 2023-05-07 公開日 2023-10-18 最終更新日 2023-10-25 実験手法 ELECTRON MICROSCOPY (3.54 Å) 主引用文献 Molecular basis for C-degron recognition by CRL2 APPBP2 ubiquitin ligase. Proc.Natl.Acad.Sci.USA, 120, 2023
8JAU	Structure of CRL2APPBP2 bound with the C-degron of MRPL28 (dimer) 分子名称: Amyloid protein-binding protein 2, Cullin-2, Elongin-B, ... 著者 Zhao, S, Zhang, K, Xu, C. 登録日 2023-05-07 公開日 2023-10-18 最終更新日 2023-10-25 実験手法 ELECTRON MICROSCOPY (3.22 Å) 主引用文献 Molecular basis for C-degron recognition by CRL2 APPBP2 ubiquitin ligase. Proc.Natl.Acad.Sci.USA, 120, 2023
8JAV	Structure of CRL2APPBP2 bound with the C-degron of MRPL28 (tetramer) 分子名称: Amyloid protein-binding protein 2, Cullin-2, E3 ubiquitin-protein ligase RBX1, ... 著者 Zhao, S, Zhang, K, Xu, C. 登録日 2023-05-07 公開日 2023-10-18 最終更新日 2023-10-25 実験手法 ELECTRON MICROSCOPY (3.44 Å) 主引用文献 Molecular basis for C-degron recognition by CRL2 APPBP2 ubiquitin ligase. Proc.Natl.Acad.Sci.USA, 120, 2023

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