PDB: 13252 件ウェブページステータス検索Chemie searchBIRD

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5CJ7	Human DNA polymerase lambda L431A mutant- MgdTTP binary and complex with 6 paired DNA 分子名称: DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(P*GP*TP*AP*CP*TP*G)-3'), DNA polymerase lambda, ... 著者 Liu, M.S, Tsai, M.D. 登録日 2015-07-14 公開日 2016-02-24 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.901 Å) 主引用文献 Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda J.Am.Chem.Soc., 138, 2016
1ONB	Solution structure of an engineered arginine-rich subdomain 2 of the hepatitis C virus NS3 RNA helicase 分子名称: helicase NS3 著者 Liu, D, Wang, Y.S, Gesell, J.J, Wyss, D.F. 登録日 2003-02-27 公開日 2003-03-11 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure and backbone dynamics of an engineered arginine-rich subdomain 2 of the hepatitis C virus NS3 RNA helicase J.Mol.Biol., 314, 2001
3PZP	Human DNA polymerase kappa extending opposite a cis-syn thymine dimer 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*CP*A)-3', 5'-D(*TP*TP*CP*CP*(TTD)P*GP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', ... 著者 Vasquez-Del Carpio, R, Silverstein, T.D, Lone, S, Johnson, R.E, Prakash, S, Prakash, L, Aggarwal, A.K. 登録日 2010-12-14 公開日 2011-12-28 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.336 Å) 主引用文献 Role of human DNA polymerase kappa in extension opposite from a cis-syn thymine dimer. J.Mol.Biol., 408, 2011
2RDJ	Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex forms 分子名称: CALCIUM ION, DNA (5'-D(*DGP*DGP*DGP*DAP*DCP*DCP*DCP*DTP*DTP*DCP*DGP*DAP*DAP*DT)-3'), DNA (5'-D(P*DTP*DAP*DTP*DTP*DCP*DGP*DAP*DAP*DGP*DGP*DGP*DTP*DCP*DCP*DC)-3'), ... 著者 Wong, J.H.Y, Ling, H. 登録日 2007-09-24 公開日 2008-06-24 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Snapshots of a Y-family DNA polymerase in replication: substrate-induced conformational transitions and implications for fidelity of Dpo4. J.Mol.Biol., 379, 2008
1TXS	STEM-LOOP D OF THE CLOVERLEAF DOMAIN OF ENTEROVIRAL 5'UTR RNA 分子名称: Enteroviral 5'-UTR 著者 Du, Z, Yu, J, Ulyanov, N.B, Andino, R, James, T.L. 登録日 2004-07-06 公開日 2004-10-05 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution Structure of a Consensus Stem-Loop D RNA Domain that Plays Important Roles in Regulating Translation and Replication in Enteroviruses and Rhinoviruses Biochemistry, 43, 2004
3RH4	DNA Polymerase Beta with a dideoxy-terminated primer with an incoming ribonucleotide (rCTP) 分子名称: 5'-D(*CP*CP*GP*AP*CP*GP*CP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DDG))-3', 5'-D(P*GP*TP*CP*GP*G)-3', ... 著者 Cavanaugh, N.A, Beard, W.A, Batra, V.K, Perera, L, Pedersen, L.G, Wilson, S.H. 登録日 2011-04-11 公開日 2011-07-06 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.918 Å) 主引用文献 Molecular insights into DNA polymerase deterrents for ribonucleotide insertion. J.Biol.Chem., 286, 2011
2RDI	Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex forms 分子名称: DI(HYDROXYETHYL)ETHER, DNA polymerase IV, GLYCEROL 著者 Wong, J.H.Y, Ling, H. 登録日 2007-09-24 公開日 2008-06-24 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 Snapshots of a Y-family DNA polymerase in replication: substrate-induced conformational transitions and implications for fidelity of Dpo4. J.Mol.Biol., 379, 2008
3RH5	DNA Polymerase Beta Mutant (Y271) with a dideoxy-terminated primer with an incoming deoxynucleotide (dCTP) 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*CP*CP*GP*AP*CP*GP*CP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DDG))-3', ... 著者 Cavanaugh, N.A, Beard, W.A, Batra, V.K, Perera, L, Pedersen, L.G, Wilson, S.H. 登録日 2011-04-11 公開日 2011-07-06 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.096 Å) 主引用文献 Molecular insights into DNA polymerase deterrents for ribonucleotide insertion. J.Biol.Chem., 286, 2011
3RH6	DNA Polymerase Beta Mutant (Y271) with a dideoxy-terminated primer with an incoming ribonucleotide (rCTP) 分子名称: (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DDG))-3'), (5'-D(P*GP*TP*CP*GP*G)-3'), 5'-D(*CP*CP*GP*AP*CP*GP*CP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', ... 著者 Cavanaugh, N.A, Beard, W.A, Batra, V.K, Perera, L, Pedersen, L.G, Wilson, S.H. 登録日 2011-04-11 公開日 2011-07-06 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.048 Å) 主引用文献 Molecular insights into DNA polymerase deterrents for ribonucleotide insertion. J.Biol.Chem., 286, 2011
4ECR	Human DNA polymerase eta - DNA ternary complex: Reaction in the AT crystal at pH 7.0 for 40 sec 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ... 著者 Nakamura, T, Zhao, Y, Yang, W. 登録日 2012-03-26 公開日 2012-07-11 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.892 Å) 主引用文献 Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
1AJF	SOLUTION STRUCTURE OF THE P5B STEM LOOP FROM A GROUP I INTRON COMPLEXED WITH COBALT (III) HEXAMMINE, NMR, MINIMIZED AVERAGE STRUCTURE 分子名称: COBALT HEXAMMINE(III), RNA (5'-R(*GP*AP*CP*AP*GP*GP*GP*GP*AP*AP*AP*CP*UP*UP*UP*GP*UP*C)-3') 著者 Kieft, J.S, Tinoco Junior, I. 登録日 1997-05-02 公開日 1997-07-07 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of a metal-binding site in the major groove of RNA complexed with cobalt (III) hexammine. Structure, 5, 1997
3FDS	Structural insight into recruitment of translesion DNA polymerase Dpo4 to sliding clamp PCNA 分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, DNA polymerase IV, ... 著者 Ling, H. 登録日 2008-11-26 公開日 2009-01-20 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Structural insight into recruitment of translesion DNA polymerase Dpo4 to sliding clamp PCNA Mol.Microbiol., 71, 2009
3GEY	Crystal structure of human poly(ADP-ribose) polymerase 15, catalytic fragment in complex with an inhibitor Pj34 分子名称: N~2~,N~2~-DIMETHYL-N~1~-(6-OXO-5,6-DIHYDROPHENANTHRIDIN-2-YL)GLYCINAMIDE, Poly [ADP-ribose] polymerase 15 著者 Karlberg, T, Siponen, M.I, Arrowsmith, C.H, Berglund, H, Bountra, C, Collins, R, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, A, Johansson, I, Kotenyova, T, Moche, M, Nordlund, P, Nyman, T, Persson, C, Sagemark, J, Schutz, P, Thorsell, A.G, Tresaugues, L, Van Den Berg, S, Weigelt, J, Welin, M, Wisniewska, M, Schuler, H, Structural Genomics Consortium (SGC) 登録日 2009-02-26 公開日 2009-03-24 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural Basis for Lack of ADP-ribosyltransferase Activity in Poly(ADP-ribose) Polymerase-13/Zinc Finger Antiviral Protein. J.Biol.Chem., 290, 2015
2A0C	Human CDK2 in complex with olomoucine II, a novel 2,6,9-trisubstituted purine cyclin-dependent kinase inhibitor 分子名称: 2-{[(2-{[(1R)-1-(HYDROXYMETHYL)PROPYL]AMINO}-9-ISOPROPYL-9H-PURIN-6-YL)AMINO]METHYL}PHENOL, Cell division protein kinase 2 著者 Krystof, V, McNae, I.W, Walkinshaw, M.D, Fischer, P.M, Muller, P, Vojtesek, B, Orsag, M, Havlicek, L, Strnad, M. 登録日 2005-06-16 公開日 2006-01-24 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Antiproliferative activity of olomoucine II, a novel 2,6,9-trisubstituted purine cyclin-dependent kinase inhibitor Cell.Mol.Life Sci., 62, 2005
2PZS	Phi29 DNA polymerase complexed with primer-template DNA (post-translocation binary complex) 分子名称: 5'-d(CTAACACGTAAGCAGTC)-3', 5'-d(GACTGCTTAC)-3', DNA polymerase 著者 Berman, A.J, Kamtekar, S, Goodman, J.L, Lazaro, J.M, de Vega, M, Blanco, L, Salas, M, Steitz, T.A. 登録日 2007-05-18 公開日 2007-07-17 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structures of phi29 DNA polymerase complexed with substrate: the mechanism of translocation in B-family polymerases Embo J., 26, 2007
2PY5	Phi29 DNA polymerase complexed with single-stranded DNA 分子名称: 1,2-ETHANEDIOL, 5'-d(GGACTTT)-3', DNA polymerase 著者 Berman, A.J, Kamtekar, S, Goodman, J.L, Lazaro, J.M, de Vega, M, Blanco, L, Salas, M, Steitz, T.A. 登録日 2007-05-15 公開日 2007-07-17 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structures of phi29 DNA polymerase complexed with substrate: the mechanism of translocation in B-family polymerases Embo J., 26, 2007
4P4M	Crystal structure of Leishmania infantum polymerase beta: Ternary P/T complex 分子名称: 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*GP*TP*A)-3'), DNA (5'-D(P*AP*TP*AP*CP*TP*G)-3'), ... 著者 Mejia, E, Burak, M, Alonso, A, Larraga, V, Kunkel, T.A, Bebenek, K, Garcia-Diaz, M. 登録日 2014-03-12 公開日 2014-08-06 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.9185 Å) 主引用文献 Structures of the Leishmania infantum polymerase beta. DNA Repair (Amst.), 18, 2014
2Z7J	Structural insights into de multifunctional VP3 protein of birnaviruses:gold derivative 分子名称: Capsid assembly protein VP3, GOLD ION 著者 Casanas, A, Navarro, A, Ferrer-Orta, C, Gonzalez, D, Rodriguez, J.F, Verdaguer, N. 登録日 2007-08-23 公開日 2008-02-05 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural insights into the multifunctional protein VP3 of birnaviruses. Structure, 16, 2008
3HPO	Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus Y714S mutant bound to G:T mismatch 分子名称: 5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DOC))-3', 5'-D(P*GP*GP*CP*GP*TP*GP*AP*TP*CP*G)-3', DNA polymerase I, ... 著者 Wu, E.Y, Beese, L.S. 登録日 2009-06-04 公開日 2010-06-23 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 The structure of a high fidelity DNA polymerase bound to a mismatched nucleotide reveals an "ajar" intermediate conformation in the nucleotide selection mechanism. J.Biol.Chem., 286, 2011
4ED8	Human DNA polymerase eta - DNA ternary complex: Reaction in the TG crystal at pH 7.0, Normal translocation 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*AP*TP*TP*AP*TP*GP*AP*CP*GP*CP*G)-3'), ... 著者 Nakamura, T, Zhao, Y, Yang, W. 登録日 2012-03-27 公開日 2012-07-11 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.521 Å) 主引用文献 Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
4P4O	Crystal structure of Leishmania infantum polymerase beta: Ternary gap complex 分子名称: 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*GP*TP*AP*T)-3'), DNA (5'-D(P*CP*GP*GP*CP*AP*AP*TP*AP*CP*TP*G)-3'), ... 著者 Mejia, E, Burak, M, Alonso, A, Larraga, V, Kunkel, T, Bebenek, K, Garcia-Diaz, M. 登録日 2014-03-12 公開日 2014-08-06 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.3001 Å) 主引用文献 Structures of the Leishmania infantum polymerase beta. DNA Repair (Amst.), 18, 2014
1IK1	Solution Structure of an RNA Hairpin from HRV-14 分子名称: 5'-R(*GP*GP*UP*AP*CP*UP*AP*UP*GP*UP*AP*CP*CP*A)-3' 著者 Huang, H, Alexandrov, A, Chen, X, Barnes III, T.W, Zhang, H, Dutta, K, Pascal, S.M. 登録日 2001-05-01 公開日 2001-07-18 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structure of an RNA hairpin from HRV-14. Biochemistry, 40, 2001
3NAE	RB69 DNA Polymerase (Y567A) Ternary Complex with dATP Opposite Guanidinohydantoin 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), ... 著者 Wang, M, Beckman, J, Blaha, G, Wang, J, Konigsberg, W.H. 登録日 2010-06-01 公開日 2010-09-15 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.003 Å) 主引用文献 Substitution of Ala for Tyr567 in RB69 DNA Polymerase Allows dAMP and dGMP To Be Inserted opposite Guanidinohydantoin . Biochemistry, 49, 2010
1OQ0	P6.1 stem loop from the activation domain of hTR 分子名称: P6.1 RNA hairpin from hTR 著者 Leeper, T, Leulliot, N, Varani, G. 登録日 2003-03-06 公開日 2003-05-13 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The solution structure of an essential stem-loop of human telomerase RNA NUCLEIC ACIDS RES., 31, 2003
4BPX	Crystal structure of human primase in complex with the primase- binding motif of DNA polymerase alpha 分子名称: DNA POLYMERASE ALPHA CATALYTIC SUBUNIT, DNA PRIMASE LARGE SUBUNIT, DNA PRIMASE SMALL SUBUNIT, ... 著者 Kilkenny, M.L, Perera, R.L, Pellegrini, L. 登録日 2013-05-28 公開日 2013-09-25 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Structures of Human Primase Reveal Design of Nucleotide Elongation Site and Mode of Pol Alpha Tethering Proc.Natl.Acad.Sci.USA, 110, 2013

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