PDB: 5653 件ウェブページステータス検索Chemie searchBIRD

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8AAG	H1-bound palindromic nucleosome, state 1 分子名称: DNA/RNA (185-MER), Histone H1.0-B, Histone H2A type 1, ... 著者 Alegrio Louro, J, Beinsteiner, B, Cheng, T.C, Patel, A.K.M, Boopathi, R, Angelov, D, Hamiche, A, Bednar, J, Kale, S, Dimitrov, S, Klaholz, B. 登録日 2022-07-01 公開日 2022-12-14 最終更新日 2023-02-15 実験手法 ELECTRON MICROSCOPY (10 Å) 主引用文献 Nucleosome dyad determines the H1 C-terminus collapse on distinct DNA arms. Structure, 31, 2023
3P46	Integrin binding collagen peptide 分子名称: Synthetic collagen peptide 著者 McEwan, P.A, Emsley, J. 登録日 2010-10-06 公開日 2011-01-12 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 End-stapled homo and hetero collagen triple helices: a click chemistry approach. Chem.Commun.(Camb.), 47, 2011
6TQF	The structure of ABC transporter Rv1819c in AMP-PNP bound state 分子名称: ABC transporter ATP-binding protein/permease, DODECYL-BETA-D-MALTOSIDE, MAGNESIUM ION, ... 著者 Rempel, S, Gati, C, Slotboom, D.J, Guskov, A. 登録日 2019-12-16 公開日 2020-04-01 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 A mycobacterial ABC transporter mediates the uptake of hydrophilic compounds. Nature, 580, 2020
5GO1	Structural, Functional characterization and discovery of novel inhibitors of Leishmania amazonensis Nucleoside Diphosphatase Kinase (NDK) 分子名称: Nucleoside diphosphate kinase 著者 Mishra, A.K, Agnihotri, P, Singh, S.P, Pratap, J.V. 登録日 2016-07-26 公開日 2017-07-26 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Discovery of novel inhibitors for Leishmania nucleoside diphosphatase kinase (NDK) based on its structural and functional characterization. J. Comput. Aided Mol. Des., 31, 2017
6YXX	State A of the Trypanosoma brucei mitoribosomal large subunit assembly intermediate 分子名称: 12S ribosomal RNA, 50S ribosomal protein L13, putative, ... 著者 Jaskolowski, M, Ramrath, D.J.F, Bieri, P, Niemann, M, Mattei, S, Calderaro, S, Leibundgut, M.A, Horn, E.K, Boehringer, D, Schneider, A, Ban, N. 登録日 2020-05-04 公開日 2020-10-14 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structural Insights into the Mechanism of Mitoribosomal Large Subunit Biogenesis. Mol.Cell, 79, 2020
6TQE	The structure of ABC transporter Rv1819c without addition of substrate 分子名称: ABC transporter ATP-binding protein/permease, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION 著者 Rempel, S, Gati, C, Slotboom, D.J, Guskov, A. 登録日 2019-12-16 公開日 2020-04-01 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 A mycobacterial ABC transporter mediates the uptake of hydrophilic compounds. Nature, 580, 2020
2DX3	NMR structure of DP5_conformation1: monomeric alpha-helix 分子名称: DP5_conformation1 著者 Tamura, A, Araki, M. 登録日 2006-08-23 公開日 2007-01-02 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Transformation of an alpha-helix peptide into a beta-hairpin induced by addition of a fragment results in creation of a coexisting state. Proteins, 66, 2006
6THT	High resolution crystal structure of a Leaf-branch compost cutinase quintuple variant 分子名称: CITRIC ACID, GLYCEROL, IMIDAZOLE, ... 著者 Nomme, J. 登録日 2019-11-21 公開日 2020-04-15 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.14 Å) 主引用文献 An engineered PET depolymerase to break down and recycle plastic bottles. Nature, 580, 2020
6CBU	Crystal structure of C4S3: A computationally designed immunogen to target Carbohydrate-Occluded Epitopes on the HIV envelope 分子名称: Acylphosphatase-1, SULFATE ION 著者 Zhu, C, Ke, H.M, Swanstrom, R, Dokholyan, N.V. 登録日 2018-02-05 公開日 2019-02-06 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Rationally designed carbohydrate-occluded epitopes elicit HIV-1 Env-specific antibodies. Nat Commun, 10, 2019
6NSO	An Unexpected Intermediate in the Reaction Catalyzed by Quinolinate Synthase 分子名称: 1,3-DIHYDROXYACETONEPHOSPHATE, IRON/SULFUR CLUSTER, Quinolinate synthase A 著者 Esakova, O.A, Grove, T.L, Silakov, A, Yennawar, N.H, Booker, S.J. 登録日 2019-01-25 公開日 2019-10-16 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 An Unexpected Species Determined by X-ray Crystallography that May Represent an Intermediate in the Reaction Catalyzed by Quinolinate Synthase. J.Am.Chem.Soc., 141, 2019
3JUH	Crystal structure of a mutant of human protein kinase CK2alpha with altered cosubstrate specificity 分子名称: CHLORIDE ION, Casein kinase II subunit alpha, GLYCEROL, ... 著者 Niefind, K, Issinger, O.-G. 登録日 2009-09-15 公開日 2009-10-20 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.66 Å) 主引用文献 Inclining the purine base binding plane in protein kinase CK2 by exchanging the flanking side-chains generates a preference for ATP as a cosubstrate J.Mol.Biol., 347, 2005
7K12	ACMSD in complex with diflunisal 分子名称: 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase, 5-(2,4-DIFLUOROPHENYL)-2-HYDROXY-BENZOIC ACID, CITRIC ACID, ... 著者 Yang, Y, Liu, A. 登録日 2020-09-07 公開日 2021-01-13 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.17 Å) 主引用文献 Diflunisal Derivatives as Modulators of ACMS Decarboxylase Targeting the Tryptophan-Kynurenine Pathway. J.Med.Chem., 64, 2021
6NSU	Crystallographic Capture of Quinolinate Synthase (NadA) from Pyrococcus horikoshii in its Substrates and Product-Bound States 分子名称: DIDEHYDROASPARTATE, IRON/SULFUR CLUSTER, Quinolinate synthase A 著者 Esakova, O.A, Grove, T.L, Silakov, A, Yennawar, N.H, Booker, S.J. 登録日 2019-01-25 公開日 2019-08-21 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 An Unexpected Species Determined by X-ray Crystallography that May Represent an Intermediate in the Reaction Catalyzed by Quinolinate Synthase. J.Am.Chem.Soc., 141, 2019
6WL7	Cryo-EM of Form 2 like peptide filament, 29-20-2 分子名称: peptide 29-20-2 著者 Wang, F, Gnewou, O.M, Modlin, C, Egelman, E.H, Conticello, V.P. 登録日 2020-04-18 公開日 2020-12-02 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structural analysis of cross alpha-helical nanotubes provides insight into the designability of filamentous peptide nanomaterials. Nat Commun, 12, 2021
6U0W	Crystal structure of Staphylococcal nuclease variant Delta+PHS K133M at cryogenic temperature 分子名称: CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE, Thermonuclease 著者 Jeliazkov, J.R, Robinson, A.C, Berger, J.M, Garcia-Moreno E, B, Gray, J.G. 登録日 2019-08-15 公開日 2019-08-28 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Toward the computational design of protein crystals with improved resolution. Acta Crystallogr D Struct Biol, 75, 2019
7K13	ACMSD in complex with diflunisal derivative 14 分子名称: 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase, 2-hydroxy-5-(thiophen-3-yl)benzoic acid, ZINC ION 著者 Yang, Y, Liu, A. 登録日 2020-09-07 公開日 2021-01-13 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.83 Å) 主引用文献 Diflunisal Derivatives as Modulators of ACMS Decarboxylase Targeting the Tryptophan-Kynurenine Pathway. J.Med.Chem., 64, 2021
8G3K	Cryo-EM imaging scaffold subunits A and B used to display KRAS G12C complex with GDP 分子名称: Cob_adeno_trans domain-containing protein, Cryo-EM imaging scaffold subunit B with DARPin - RCG-33 著者 Castells-Graells, R, Sawaya, M.R, Yeates, T.O. 登録日 2023-02-08 公開日 2023-08-09 最終更新日 2023-09-27 実験手法 ELECTRON MICROSCOPY (2.2 Å) 主引用文献 Cryo-EM structure determination of small therapeutic protein targets at 3 angstrom -resolution using a rigid imaging scaffold. Proc.Natl.Acad.Sci.USA, 120, 2023
6U0X	Crystal structure of Staphylococcal nuclease variant Delta+PHS Q123D at cryogenic temperature 分子名称: CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE, Thermonuclease 著者 Jeliazkov, J.R, Robinson, A.C, Berger, J.M, Garcia-Moreno E, B, Gray, J.G. 登録日 2019-08-15 公開日 2019-08-28 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 Toward the computational design of protein crystals with improved resolution. Acta Crystallogr D Struct Biol, 75, 2019
6THS	High resolution crystal structure of Leaf-branch cutinase S165A variant 分子名称: 1,4-DIETHYLENE DIOXIDE, LCC 著者 Nomme, J. 登録日 2019-11-21 公開日 2020-04-22 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 An engineered PET depolymerase to break down and recycle plastic bottles. Nature, 580, 2020
2E4E	NMR structure of D4P/K7G mutant of GPM12 分子名称: GPM12 著者 Terada, T, Satoh, D, Mikawa, T, Ito, Y, Shimizu, K. 登録日 2006-12-06 公開日 2008-02-05 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Understanding the roles of amino acid residues in tertiary structure formation of chignolin by using molecular dynamics simulation To be Published
2AT2	MOLECULAR STRUCTURE OF BACILLUS SUBTILIS ASPARTATE TRANSCARBAMOYLASE AT 3.0 ANGSTROMS RESOLUTION 分子名称: ASPARTATE CARBAMOYLTRANSFERASE 著者 Stevens, R.C, Reinisch, K.M, Lipscomb, W.N. 登録日 1992-07-20 公開日 1994-01-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Molecular structure of Bacillus subtilis aspartate transcarbamoylase at 3.0 A resolution. Proc.Natl.Acad.Sci.USA, 88, 1991
3PGF	Crystal structure of maltose bound MBP with a conformationally specific synthetic antigen binder (sAB) 分子名称: GLYCEROL, IMIDAZOLE, Maltose-binding periplasmic protein, ... 著者 Kossiakoff, A.A, Duguid, E.M, Sandstrom, A. 登録日 2010-11-01 公開日 2011-03-09 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Allosteric control of ligand-binding affinity using engineered conformation-specific effector proteins. Nat.Struct.Mol.Biol., 18, 2011
6NMI	Cryo-EM structure of the human TFIIH core complex 分子名称: CDK-activating kinase assembly factor MAT1, General transcription and DNA repair factor IIH helicase subunit XPB, General transcription and DNA repair factor IIH helicase subunit XPD, ... 著者 Greber, B.J, Toso, D, Fang, J, Nogales, E. 登録日 2019-01-10 公開日 2019-03-13 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 The complete structure of the human TFIIH core complex. Elife, 8, 2019
2AG3	Heterocyclic Peptide Backbone Modification in Gcn4-pLI Based Coiled Coils: Substitution of the K(15)-L(16) amide with a triazole 分子名称: GCN4-pLI 著者 Horne, W.S, Ghadiri, M.R. 登録日 2005-07-26 公開日 2006-08-08 最終更新日 2018-03-07 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Copper-Catalyzed Azide-Alkyne Cycloaddition as a Non-native Ligation Strategy toward Backbone-Modified Peptides To be Published
6KH3	Design and crystal structure of protein MOFs with ferritin nanocages as linkers and nickel clusters as nodes 分子名称: FE (III) ION, Ferritin, NICKEL (II) ION 著者 Gu, C, Chen, H, Wang, Y, Zhang, T, Wang, H, Zhao, G. 登録日 2019-07-12 公開日 2020-01-29 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural Insight into Binary Protein Metal-Organic Frameworks with Ferritin Nanocages as Linkers and Nickel Clusters as Nodes. Chemistry, 26, 2020

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