PDB: 5515 件ウェブページステータス検索Chemie searchBIRD

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4KVV	Crystal structure of an alkylated Cys mutant of CC-Hex 分子名称: 6-HELIX COILED COIL CC-HEX-L24C PEPTIDE with an alkylated Cys mutation 著者 Burton, A.J, Agnew, C, Brady, R.L, Woolfson, D.N. 登録日 2013-05-23 公開日 2013-08-21 最終更新日 2013-09-11 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Accessibility, Reactivity, and Selectivity of Side Chains within a Channel of de Novo Peptide Assembly. J.Am.Chem.Soc., 135, 2013
4KVU	Crystal structure of a 6-helix coiled coil CC-Hex-L17C-W224BF 分子名称: 6-helix coiled coil CC-Hex-L17C-W224BF, GLYCEROL 著者 Burton, A.J, Agnew, C, Brady, R.L, Woolfson, D.N. 登録日 2013-05-23 公開日 2013-08-21 最終更新日 2013-09-11 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Accessibility, Reactivity, and Selectivity of Side Chains within a Channel of de Novo Peptide Assembly. J.Am.Chem.Soc., 135, 2013
2CW1	Solution structure of the de novo-designed lambda Cro fold protein 分子名称: SN4m 著者 Isogai, Y, Ito, Y, Ikeya, T, Shiro, Y, Ota, M. 登録日 2005-06-15 公開日 2005-12-13 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Design of lambda Cro fold: solution structure of a monomeric variant of the de novo protein. J.Mol.Biol., 354, 2005
5KWX	NMR Solution Structure of Designed Peptide NC_EEH_D1 分子名称: Designed peptide NC_EEH_D1 著者 Harvey, P.J, Craik, D.J. 登録日 2016-07-19 公開日 2016-09-21 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Accurate de novo design of hyperstable constrained peptides. Nature, 538, 2016
5KWO	NMR Solution Structure of Designed Peptide NC_EHE_D1 分子名称: Designed peptide NC_EHE_D1 著者 Harvey, P.J, Craik, D.J. 登録日 2016-07-18 公開日 2016-09-21 最終更新日 2016-11-02 実験手法 SOLUTION NMR 主引用文献 Accurate de novo design of hyperstable constrained peptides. Nature, 538, 2016
5KX2	NMR Solution Structure of Designed Peptide NC_cEE_D1 分子名称: Designed peptide NC_cEE_D1 著者 Harvey, P.J, Craik, D.J. 登録日 2016-07-19 公開日 2016-09-21 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Accurate de novo design of hyperstable constrained peptides. Nature, 538, 2016
5KWZ	NMR Solution Structure of Designed Peptide NC_cHH_D1 分子名称: Designed peptide NC_cHH_D1 著者 Harvey, P.J, Craik, D.J. 登録日 2016-07-19 公開日 2016-09-21 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Accurate de novo design of hyperstable constrained peptides. Nature, 538, 2016
5KX0	NMR Solution Structure of Designed Peptide NC_cHh_DL_D1 分子名称: Designed peptide NC_cHh_DL_D1 著者 Harvey, P.J, Craik, D.J. 登録日 2016-07-19 公開日 2016-09-21 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Accurate de novo design of hyperstable constrained peptides. Nature, 538, 2016
5KWP	NMR Solution Structure of Designed Peptide NC_EEH_D2 分子名称: Designed peptide NC_EEH_D2 著者 Harvey, P.J, Craik, D.J. 登録日 2016-07-18 公開日 2016-09-21 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Accurate de novo design of hyperstable constrained peptides. Nature, 538, 2016
5KX1	NMR Solution Structure of Designed Peptide NC_cHHH_D1 分子名称: Designed peptide NC_cHHH_D1 著者 Harvey, P.J, Craik, D.J. 登録日 2016-07-19 公開日 2016-09-21 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Accurate de novo design of hyperstable constrained peptides. Nature, 538, 2016
5KVN	NMR Solution Structure of Designed Peptide NC_HEE_D1 分子名称: Designed peptide NC_HEE_D1 著者 Harvey, P.J, Craik, D.J. 登録日 2016-07-14 公開日 2016-09-21 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Accurate de novo design of hyperstable constrained peptides. Nature, 538, 2016
5LFN	Crystal structure of human chondroadherin 分子名称: CHLORIDE ION, Chondroadherin 著者 Ramisch, S, Pramhed, A, Logan, D.T. 登録日 2016-07-03 公開日 2016-12-28 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of human chondroadherin: solving a difficult molecular-replacement problem using de novo models. Acta Crystallogr D Struct Biol, 73, 2017
5D9B	Luciferin-regenerating enzyme solved by SIRAS using XFEL (refined against native data) 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Luciferin regenerating enzyme, MAGNESIUM ION 著者 Yamashita, K, Pan, D, Okuda, T, Murai, T, Kodan, A, Yamaguchi, T, Gomi, K, Kajiyama, N, Kato, H, Ago, H, Yamamoto, M, Nakatsu, T. 登録日 2015-08-18 公開日 2015-09-23 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography. Sci Rep, 5, 2015
8B16	A hexameric barrel state of a de novo coiled-coil assembly: CC-Pent2-I17Q 分子名称: 1,2-ETHANEDIOL, CC-Pent2-I17Q 著者 Martin, F.J.O, Dawson, W.M, Woolfson, D.N. 登録日 2022-09-09 公開日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Exchange, promiscuity, and orthogonality in a set of de novo coiled-coil assemblies To Be Published
8B15	A pentameric barrel state of a de novo coiled-coil assembly: CC-Pent2-I10Q 分子名称: CC-Pent2-I10Q 著者 Martin, F.J.O, Dawson, W.M, Woolfson, D.N. 登録日 2022-09-09 公開日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Exchange, promiscuity, and orthogonality in a set of de novo coiled-coil assemblies To Be Published
7JH5	Co-LOCKR: de novo designed protein switch 分子名称: Co-LOCKR: de novo designed protein switch 著者 Bick, M.J, Lajoie, M.J, Boyken, S.E, Sankaran, B, Baker, D. 登録日 2020-07-20 公開日 2020-09-02 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.103 Å) 主引用文献 Designed protein logic to target cells with precise combinations of surface antigens. Science, 369, 2020
4KY3	Three-dimensional Structure of the orthorhombic crystal of computationally designed insertion domain , Northeast Structural Genomics Consortium (NESG) Target OR327 分子名称: designed protein OR327 著者 Kuzin, A, Su, M, Seetharaman, J, Maglaqui, M, Xiao, R, Lee, D, Gleixner, J, Baker, D, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG) 登録日 2013-05-28 公開日 2013-06-19 最終更新日 2016-02-17 実験手法 X-RAY DIFFRACTION (2.964 Å) 主引用文献 Precise assembly of complex beta sheet topologies from de novo designed building blocks. Elife, 4, 2015
2PI4	T7RNAP complexed with a phi10 protein and initiating GTPs. 分子名称: 3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE, 5'-D(*CP*TP*TP*CP*CP*TP*AP*TP*AP*GP*TP*GP*AP*GP*TP*CP*GP*TP*AP*TP*TP*A)-3', 5'-D(*TP*AP*AP*TP*AP*CP*GP*AP*CP*TP*CP*AP*CP*T)-3', ... 著者 Kennedy, W.P, Momand, J.R, Yin, Y.W. 登録日 2007-04-12 公開日 2007-06-19 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Mechanism for de novo RNA synthesis and initiating nucleotide specificity by t7 RNA polymerase. J.Mol.Biol., 370, 2007
2PI5	T7 RNA polymerase complexed with a phi10 promoter 分子名称: 5'-D(*CP*TP*TP*C*CP*TP*AP*TP*AP*GP*TP*GP*AP*GP*TP*CP*GP*TP*AP*TP*TP*A)-3', 5'-D(*TP*AP*AP*TP*AP*CP*GP*AP*CP*TP*CP*AP*CP*T)-3', DNA-directed RNA polymerase 著者 Kennedy, W.P, Momand, J.R, Yin, Y.W. 登録日 2007-04-12 公開日 2007-06-19 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Mechanism for de novo RNA synthesis and initiating nucleotide specificity by t7 RNA polymerase. J.Mol.Biol., 370, 2007
5U9T	The Tris-thiolate Zn(II)S3Cl Binding Site Engineered by D-Cysteine Ligands in de Novo Three-stranded Coiled Coil Environment 分子名称: ACETATE ION, CHLORIDE ION, POLYETHYLENE GLYCOL (N=34), ... 著者 Ruckthong, L, Peacock, A.F.A, Stuckey, J.A, Pecoraro, V.L. 登録日 2016-12-18 公開日 2017-04-26 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 d-Cysteine Ligands Control Metal Geometries within De Novo Designed Three-Stranded Coiled Coils. Chemistry, 23, 2017
8WM0	Crystal structure of TNIK-thiopeptide wTP3 complex 分子名称: ADENOSINE, THIOPEPTIDE wTP3, TRAF2 and NCK-interacting protein kinase 著者 Hamada, K, Kobayashi, S, Vinogradov, A.A, Zhang, Y, Goto, Y, Suga, H, Ogata, K, Sengoku, T. 登録日 2023-10-01 公開日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 A Compact Reprogrammed Genetic Code for De Novo Discovery of Proteolytically Stable Thiopeptides. J.Am.Chem.Soc., 2024
5TPH	Crystal structure of a de novo designed protein homodimer with curved beta-sheet 分子名称: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, de novo NTF2 homodimer 著者 Basanta, B, Marcos, E, Oberdorfer, G, Chidyausiku, T.M, Sankaran, B, Baker, D. 登録日 2016-10-20 公開日 2017-01-25 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.47 Å) 主引用文献 Principles for designing proteins with cavities formed by curved beta sheets. Science, 355, 2017
5OER	Hen egg-white lysozyme refined against 5000 9 keV diffraction patterns 分子名称: 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID, GADOLINIUM ATOM, Lysozyme C, ... 著者 Gorel, A, Schlichting, I. 登録日 2017-07-09 公開日 2017-10-25 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Multi-wavelength anomalous diffraction de novo phasing using a two-colour X-ray free-electron laser with wide tunability. Nat Commun, 8, 2017
5U35	Crystal structure of a de novo designed protein with curved beta-sheet 分子名称: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 2-METHOXYETHANOL, CHLORIDE ION, ... 著者 Oberdorfer, G, Marcos, E, Basanta, B, Chidyausiku, T.M, Sankaran, B, Zwart, P.H, Baker, D. 登録日 2016-12-01 公開日 2017-01-25 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Principles for designing proteins with cavities formed by curved beta sheets. Science, 355, 2017
5NNL	Inactive dihydroorotase-like domain of Chaetomium thermophilum CAD-like multifunctional protein 分子名称: Inactive dihydroorotase-like domain 著者 Ramon-Maiques, S, Moreno-Morcillo, M, Grande-Garcia, A. 登録日 2017-04-10 公開日 2017-06-07 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.13 Å) 主引用文献 Structural Insight into the Core of CAD, the Multifunctional Protein Leading De Novo Pyrimidine Biosynthesis. Structure, 25, 2017

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