Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3BBF
DownloadVisualize
BU of 3bbf by Molmil
Crystal structure of the NM23-H2 transcription factor complex with GDP
分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Weichsel, A, Montfort, W.R.
登録日2007-11-09
公開日2008-09-23
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献NM23-H2 may play an indirect role in transcriptional activation of c-myc gene expression but does not cleave the nuclease hypersensitive element III1.
Mol.Cancer Ther., 8, 2009
8Q5V
DownloadVisualize
BU of 8q5v by Molmil
MgADP-bound Fe protein of the molybdenum nitrogenase from Methanothermococcus thermolithotrophicus
分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, ...
著者Maslac, N, Wagner, T.
登録日2023-08-09
公開日2024-05-15
最終更新日2024-08-14
実験手法X-RAY DIFFRACTION (2.74 Å)
主引用文献Structural comparison of (hyper-)thermophilic nitrogenase reductases from three marine Methanococcales.
Febs J., 291, 2024
6PBC
DownloadVisualize
BU of 6pbc by Molmil
Structural basis for the activation of PLC-gamma isozymes by phosphorylation and cancer-associated mutations
分子名称: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma,1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1, CALCIUM ION, SODIUM ION
著者Hajicek, N, Sondek, J.
登録日2019-06-13
公開日2020-01-08
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.46 Å)
主引用文献Structural basis for the activation of PLC-gamma isozymes by phosphorylation and cancer-associated mutations.
Elife, 8, 2019
8XHM
DownloadVisualize
BU of 8xhm by Molmil
Crystal structure of Nocardia seriolae dUTP diphosphatase
分子名称: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DI(HYDROXYETHYL)ETHER, ...
著者Weng, J, Wei, Z.
登録日2023-12-18
公開日2024-11-13
実験手法X-RAY DIFFRACTION (2.12 Å)
主引用文献Structure-guided discovery of novel dUTPase inhibitors with anti- Nocardia activity by computational design.
J Enzyme Inhib Med Chem, 39, 2024
6PHZ
DownloadVisualize
BU of 6phz by Molmil
Crystal structure of Marinobacter subterrani acetylpolyamine amidohydrolase (msAPAH) complexed with 7-[(3-aminopropyl)amino]-1,1,1-trifluoroheptan-2-one
分子名称: 7-[(3-aminopropyl)amino]-1,1,1-trifluoroheptane-2,2-diol, Acetylpolyamine Amidohydrolase, MAGNESIUM ION, ...
著者Osko, J.D, Christianson, D.W.
登録日2019-06-25
公開日2019-09-18
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure and Function of the Acetylpolyamine Amidohydrolase from the Deep Earth HalophileMarinobacter subterrani.
Biochemistry, 58, 2019
8BP6
DownloadVisualize
BU of 8bp6 by Molmil
Structure of MHC-class I related molecule MR1 with bound M3Ade.
分子名称: (1R,5S)-8-(9H-purin-6-yl)-2-oxa-8-azabicyclo[3.3.1]nona-3,6-diene-4,6-dicarbaldehyde, Beta-2-microglobulin,Major histocompatibility complex class I-related gene protein
著者Berloffa, G, Jakob, R.P, Maier, T.
登録日2022-11-16
公開日2023-11-29
最終更新日2025-02-05
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献The carbonyl nucleobase adduct M 3 Ade is a potent antigen for adaptive polyclonal MR1-restricted T cells.
Immunity, 2024
8PSR
DownloadVisualize
BU of 8psr by Molmil
ERK2 covalently bound to SynthRevD-12-opt artificial peptide
分子名称: GLYCEROL, Mitogen-activated protein kinase 1, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
著者Sok, P, Poti, A, Gogl, G, Remenyi, A.
登録日2023-07-13
公開日2024-07-24
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Targeting a key protein-protein interaction surface on mitogen-activated protein kinases by a precision-guided warhead scaffold.
Nat Commun, 15, 2024
3VDR
DownloadVisualize
BU of 3vdr by Molmil
Crystal structure of D-3-hydroxybutyrate dehydrogenase, prepared in the presence of the substrate D-3-hydroxybutyrate and NAD(+)
分子名称: (3R)-3-hydroxybutanoic acid, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, ACETOACETIC ACID, ...
著者Hoque, M.M, Shimizu, S, Juan, E.C.M, Sato, Y, Hossain, M.T, Yamamoto, T, Imamura, S, Amano, H, Suzuki, K, Sekiguchi, T, Tsunoda, M, Takenaka, A.
登録日2012-01-06
公開日2012-02-08
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure of D-3-hydroxybutyrate dehydrogenase prepared in the presence of the substrate D-3-hydroxybutyrate and NAD+.
Acta Crystallogr.,Sect.F, 65, 2009
2PJL
DownloadVisualize
BU of 2pjl by Molmil
Crystal Structure of Human Estrogen-Related Receptor alpha in Complex with a Synthetic Inverse Agonist reveals its Novel Molecular Mechanism
分子名称: 1-CYCLOHEXYL-N-{[1-(4-METHYLPHENYL)-1H-INDOL-3-YL]METHYL}METHANAMINE, Steroid hormone receptor ERR1
著者Kallen, J.
登録日2007-04-16
公開日2007-06-12
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of human estrogen-related receptor alpha in complex with a synthetic inverse agonist reveals its novel molecular mechanism.
J.Biol.Chem., 282, 2007
9IL3
DownloadVisualize
BU of 9il3 by Molmil
Crystal structure of human malectin in complex with glucose
分子名称: 1,4-DIETHYLENE DIOXIDE, Malectin, SULFATE ION, ...
著者Si, Y.L.
登録日2024-06-29
公開日2025-07-02
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献The Structural Basis of Human Malectin Recognition of Ligands
To Be Published
9HL0
DownloadVisualize
BU of 9hl0 by Molmil
Protein Kinase CK2 and small molecule ligands
分子名称: 5,7-bis(fluoranyl)-1~{H}-indole, Casein kinase II subunit alpha, DI(HYDROXYETHYL)ETHER, ...
著者Krimm, I, Gelin, M, Guichou, J.F.
登録日2024-12-04
公開日2025-07-30
実験手法X-RAY DIFFRACTION (2.63 Å)
主引用文献Binding-Site Switch for Protein Kinase CK2 Inhibitors.
Chemmedchem, 20, 2025
8CJB
DownloadVisualize
BU of 8cjb by Molmil
A268M variant of the CODH/ACS complex of C. hydrogenoformans
分子名称: ACETATE ION, CO-methylating acetyl-CoA synthase, Carbon monoxide dehydrogenase, ...
著者Ruickoldt, J, Jeoung, J, Lennartz, F, Dobbek, H.
登録日2023-02-13
公開日2024-02-21
最終更新日2024-07-31
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Coupling CO 2 Reduction and Acetyl-CoA Formation: The Role of a CO Capturing Tunnel in Enzymatic Catalysis.
Angew.Chem.Int.Ed.Engl., 63, 2024
1JDD
DownloadVisualize
BU of 1jdd by Molmil
MUTANT (E219Q) MALTOTETRAOSE-FORMING EXO-AMYLASE COCRYSTALLIZED WITH MALTOTETRAOSE (CRYSTAL TYPE 2)
分子名称: 1,4-ALPHA MALTOTETRAHYDROLASE, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Yoshioka, Y, Hasegawa, K, Matsuura, Y, Katsube, Y, Kubota, M.
登録日1997-06-16
公開日1997-10-15
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures of a mutant maltotetraose-forming exo-amylase cocrystallized with maltopentaose.
J.Mol.Biol., 271, 1997
9HL7
DownloadVisualize
BU of 9hl7 by Molmil
Protein Kinase CK2 and small molecule ligands
分子名称: 2-(6-chloranyl-1~{H}-indol-3-yl)ethanoic acid, Casein kinase II subunit alpha, DIMETHYL SULFOXIDE, ...
著者Krimm, I, Gelin, I, Guichou, J.F.
登録日2024-12-04
公開日2025-07-30
実験手法X-RAY DIFFRACTION (2.28 Å)
主引用文献Binding-Site Switch for Protein Kinase CK2 Inhibitors.
Chemmedchem, 20, 2025
9HKS
DownloadVisualize
BU of 9hks by Molmil
Protein Kinase CK2 and small molecule ligands
分子名称: 2-(5-chloranyl-1~{H}-indol-3-yl)ethanamide, Casein kinase II subunit alpha, SULFATE ION
著者Krimm, I, Gelin, M, Guichou, J.F.
登録日2024-12-04
公開日2025-07-30
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Binding-Site Switch for Protein Kinase CK2 Inhibitors.
Chemmedchem, 20, 2025
3W1A
DownloadVisualize
BU of 3w1a by Molmil
Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with 5-halogenated orotate derivatives
分子名称: 5-FLUORO-2,6-DIOXO-1,2,3,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLIC ACID, COBALT HEXAMMINE(III), Dihydroorotate dehydrogenase (fumarate), ...
著者Inaoka, D.K, Iida, M, Tabuchi, T, Lee, N, Matsuoka, S, Shiba, T, Sakamoto, K, Suzuki, S, Balogun, E.O, Nara, T, Aoki, T, Inoue, M, Honma, T, Tanaka, A, Harada, S, Kita, K.
登録日2012-11-13
公開日2013-11-13
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with 5-halogenated orotate derivatives
To be Published
3W23
DownloadVisualize
BU of 3w23 by Molmil
Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-3-131
分子名称: 5-[2-(3-chlorophenyl)ethyl]-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid, COBALT HEXAMMINE(III), Dihydroorotate dehydrogenase (fumarate), ...
著者Inaoka, D.K, Iida, M, Tabuchi, T, Lee, N, Matsuoka, S, Shiba, T, Sakamoto, K, Suzuki, S, Balogun, E.O, Nara, T, Aoki, T, Inoue, M, Honma, T, Tanaka, A, Harada, S, Kita, K.
登録日2012-11-26
公開日2013-11-27
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-3-131
To be Published
3VB5
DownloadVisualize
BU of 3vb5 by Molmil
Crystal structure of SARS-CoV 3C-like protease with C4Z
分子名称: 1,2-ETHANEDIOL, 3C-like proteinase, C4Z inhibitor
著者Chuck, C.P, Wong, K.B.
登録日2011-12-31
公開日2012-12-12
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Design, synthesis and crystallographic analysis of nitrile-based broad-spectrum peptidomimetic inhibitors for coronavirus 3C-like proteases
Eur.J.Med.Chem., 59C, 2012
6PKH
DownloadVisualize
BU of 6pkh by Molmil
Zebrafish N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase (NAGPA) catalytic domain auto-inhibited by pro-peptide
分子名称: N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase, alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
著者Gorelik, A, Illes, K, Nagar, B.
登録日2019-06-29
公開日2020-02-19
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structure of the Mannose-6-Phosphate Uncovering Enzyme.
Structure, 28, 2020
3BGL
DownloadVisualize
BU of 3bgl by Molmil
Hepatoselectivity of Statins: Design and synthesis of 4-sulfamoyl pyrroles as HMG-CoA reductase inhibitors
分子名称: (3R,5R)-7-[2-(4-fluorophenyl)-5-(1-methylethyl)-4-(morpholin-4-ylsulfonyl)-3-phenyl-1H-pyrrol-1-yl]-3,5-dihydroxyheptanoic acid, 3-hydroxy-3-methylglutaryl-coenzyme A reductase
著者Finzel, B.C, Pavlovsky, A, Park, W.K.C.
登録日2007-11-26
公開日2008-01-29
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.225 Å)
主引用文献Hepatoselectivity of statins: design and synthesis of 4-sulfamoyl pyrroles as HMG-CoA reductase inhibitors.
Bioorg.Med.Chem.Lett., 18, 2008
2PIJ
DownloadVisualize
BU of 2pij by Molmil
Structure of the Cro protein from prophage Pfl 6 in Pseudomonas fluorescens Pf-5
分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, BICARBONATE ION, Prophage Pfl 6 Cro, ...
著者Roessler, C.G, Roberts, S.A, Montfort, W.R, Cordes, M.H.J.
登録日2007-04-13
公開日2008-03-04
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Transitive homology-guided structural studies lead to discovery of Cro proteins with 40% sequence identity but different folds.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3AYX
DownloadVisualize
BU of 3ayx by Molmil
Membrane-bound respiratory [NiFe] hydrogenase from Hydrogenovibrio marinus in an H2-reduced condition
分子名称: CARBON MONOXIDE, CYANIDE ION, FE (II) ION, ...
著者Shomura, Y, Yoon, K.S, Nishihara, H, Higuchi, Y.
登録日2011-05-20
公開日2011-10-12
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献Structural basis for a [4Fe-3S] cluster in the oxygen-tolerant membrane-bound [NiFe]-hydrogenase
Nature, 479, 2011
6PQP
DownloadVisualize
BU of 6pqp by Molmil
Cryo-EM structure of the human TRPA1 ion channel in complex with the covalent agonist BITC
分子名称: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, N-benzylthioformamide, ...
著者Suo, Y, Wang, Z, Zubcevic, L, Hsu, A.L, He, Q, Borgnia, M.J, Ji, R.-R, Lee, S.-Y.
登録日2019-07-09
公開日2020-01-08
最終更新日2024-10-30
実験手法ELECTRON MICROSCOPY (3.06 Å)
主引用文献Structural Insights into Electrophile Irritant Sensing by the Human TRPA1 Channel.
Neuron, 105, 2020
3W1R
DownloadVisualize
BU of 3w1r by Molmil
Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-3-045a
分子名称: 2,6-dioxo-5-(2-phenylethyl)-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid, COBALT HEXAMMINE(III), Dihydroorotate dehydrogenase (fumarate), ...
著者Inaoka, D.K, Iida, M, Tabuchi, T, Lee, N, Matsuoka, S, Shiba, T, Sakamoto, K, Suzuki, S, Balogun, E.O, Nara, T, Aoki, T, Inoue, M, Honma, T, Tanaka, A, Harada, S, Kita, K.
登録日2012-11-20
公開日2013-11-20
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-3-045a
To be Published
3W22
DownloadVisualize
BU of 3w22 by Molmil
Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-3-125
分子名称: 5-[2-(4-tert-butylphenyl)ethyl]-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid, COBALT HEXAMMINE(III), Dihydroorotate dehydrogenase (fumarate), ...
著者Inaoka, D.K, Iida, M, Tabuchi, T, Lee, N, Matsuoka, S, Shiba, T, Sakamoto, K, Suzuki, S, Balogun, E.O, Nara, T, Aoki, T, Inoue, M, Honma, T, Tanaka, A, Harada, S, Kita, K.
登録日2012-11-26
公開日2013-11-27
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-3-125
To be Published

243083

件を2025-10-15に公開中

PDB statisticsPDBj update infoContact PDBjnumon