8DQW
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1WD1
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![BU of 1wd1 by Molmil](/molmil-images/mine/1wd1) | Crystal structures of the hyperthermophilic chromosomal protein Sac7d in complex with DNA decamers | 分子名称: | 5'-D(*CP*CP*TP*AP*CP*GP*TP*AP*GP*G)-3', DNA-binding proteins 7a/7b/7d | 著者 | Ko, T.-P, Chu, H.-M, Chen, C.-Y, Chou, C.-C, Wang, A.H.-J. | 登録日 | 2004-05-10 | 公開日 | 2004-08-03 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Structures of the hyperthermophilic chromosomal protein Sac7d in complex with DNA decamers. Acta Crystallogr.,Sect.D, 60, 2004
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6MQ8
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8DR6
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![BU of 8dr6 by Molmil](/molmil-images/mine/8dr6) | Closed state of RFC:PCNA bound to a nicked dsDNA | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, DNA (32-MER), DNA (5'-D(P*CP*CP*CP*CP*CP*CP*GP*GP*CP*CP*CP*CP*CP*CP*CP*GP*GP*C)-3'), ... | 著者 | Schrecker, M, Hite, R.K. | 登録日 | 2022-07-20 | 公開日 | 2022-08-24 | 最終更新日 | 2024-02-14 | 実験手法 | ELECTRON MICROSCOPY (2.39 Å) | 主引用文献 | Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
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7U19
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![BU of 7u19 by Molmil](/molmil-images/mine/7u19) | RFC:PCNA bound to nicked DNA | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, DNA, MAGNESIUM ION, ... | 著者 | Liu, X, Gaubitz, C, Pajak, J, Kelch, B.A. | 登録日 | 2022-02-20 | 公開日 | 2022-07-06 | 最終更新日 | 2024-02-21 | 実験手法 | ELECTRON MICROSCOPY (3.7 Å) | 主引用文献 | A second DNA binding site on RFC facilitates clamp loading at gapped or nicked DNA. Elife, 11, 2022
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2CGP
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![BU of 2cgp by Molmil](/molmil-images/mine/2cgp) | CATABOLITE GENE ACTIVATOR PROTEIN/DNA COMPLEX, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE | 分子名称: | ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, DNA (5'-D(*AP*TP*TP*AP*AP*TP*GP*TP*GP*AP*CP*AP*TP*AP*T)-3'), DNA (5'-D(*GP*TP*CP*AP*CP*AP*TP*TP*AP*AP*T)-3'), ... | 著者 | Passner, J.M, Steitz, T.A. | 登録日 | 1997-01-31 | 公開日 | 1998-02-04 | 最終更新日 | 2023-08-02 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | The structure of a CAP-DNA complex having two cAMP molecules bound to each monomer. Proc.Natl.Acad.Sci.USA, 94, 1997
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4XA5
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![BU of 4xa5 by Molmil](/molmil-images/mine/4xa5) | Crystal structure of the pre-catalytic ternary complex of DNA polymerase lambda with a templating A and an incoming 8-oxo-dGTP | 分子名称: | 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ACETATE ION, DNA polymerase lambda, ... | 著者 | Burak, M.J, Guja, K.E, Garcia-Diaz, M. | 登録日 | 2014-12-12 | 公開日 | 2016-02-10 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Nucleotide binding interactions modulate dNTP selectivity and facilitate 8-oxo-dGTP incorporation by DNA polymerase lambda. Nucleic Acids Res., 43, 2015
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3CMT
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![BU of 3cmt by Molmil](/molmil-images/mine/3cmt) | Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, DNA (5'-D(*DTP*DTP*DTP*DTP*DTP*DCP*DCP*DCP*DAP*DCP*DCP*DTP*DTP*DTP*DT)-3'), DNA (5'-D(P*DGP*DGP*DTP*DGP*DGP*DG)-3'), ... | 著者 | Chen, Z, Yang, H, Pavletich, N.P. | 登録日 | 2008-03-24 | 公開日 | 2008-05-20 | 最終更新日 | 2024-02-21 | 実験手法 | X-RAY DIFFRACTION (3.15 Å) | 主引用文献 | Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures. Nature, 453, 2008
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4RNN
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4XUS
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![BU of 4xus by Molmil](/molmil-images/mine/4xus) | Crystal structure of the pre-catalytic ternary complex of DNA polymerase lambda with a templating A and an incoming dTTP | 分子名称: | 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE, DNA (5'-D(*CP*AP*GP*TP*A)-3'), DNA (5'-D(*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*G)-3'), ... | 著者 | Burak, M.J, Guja, K.E, Garcia-Diaz, M. | 登録日 | 2015-01-26 | 公開日 | 2016-02-03 | 最終更新日 | 2024-02-28 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Nucleotide binding interactions modulate dNTP selectivity and facilitate 8-oxo-dGTP incorporation by DNA polymerase lambda. Nucleic Acids Res., 43, 2015
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2JEF
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![BU of 2jef by Molmil](/molmil-images/mine/2jef) | The Molecular Basis of Selectivity of Nucleotide Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state and X-Ray Crystallography of Correct and Incorrect Pairing | 分子名称: | 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*DOC)-3', 5'-D(*TP*CP*AP*CP*BZGP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP CP*CP*C)-3', ... | 著者 | Eoff, R.L, Angel, K.C, Kosekov, I.D, Egli, M, Guengerich, F.P. | 登録日 | 2007-01-17 | 公開日 | 2007-03-13 | 最終更新日 | 2023-12-13 | 実験手法 | X-RAY DIFFRACTION (2.17 Å) | 主引用文献 | Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus Solfataricus DNA Polymerase Dpo4: Steady-State and Pre-Steady-State Kinetics and X-Ray Crystallography of Correct and Incorrect Pairing. J.Biol.Chem., 282, 2007
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1WVL
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9ANT
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![BU of 9ant by Molmil](/molmil-images/mine/9ant) | ANTENNAPEDIA HOMEODOMAIN-DNA COMPLEX | 分子名称: | ANTENNAPEDIA HOMEODOMAIN, DNA (5'-D(*AP*GP*AP*AP*AP*GP*CP*CP*AP*TP*TP*AP*GP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)-3'), ... | 著者 | Fraenkel, E, Pabo, C.O. | 登録日 | 1998-07-02 | 公開日 | 1998-10-14 | 最終更新日 | 2024-02-14 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Comparison of X-ray and NMR structures for the Antennapedia homeodomain-DNA complex. Nat.Struct.Biol., 5, 1998
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5MCU
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![BU of 5mcu by Molmil](/molmil-images/mine/5mcu) | New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins (complex p53DBD-LHG2) | 分子名称: | 1,2-ETHANEDIOL, Cellular tumor antigen p53, DNA, ... | 著者 | Golovenko, D, Rozenberg, H, Shakked, Z. | 登録日 | 2016-11-10 | 公開日 | 2018-06-13 | 最終更新日 | 2024-01-17 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins. Structure, 26, 2018
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4R2S
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![BU of 4r2s by Molmil](/molmil-images/mine/4r2s) | Wilms Tumor Protein (WT1) Q369P zinc fingers in complex with methylated DNA | 分子名称: | 1,2-ETHANEDIOL, DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*(5CM)P*GP*T)-3'), DNA (5'-D(*TP*AP*(5CM)P*GP*CP*CP*CP*AP*CP*GP*C)-3'), ... | 著者 | Hashimoto, H, Olanrewaju, Y.O, Zheng, Y, Wilson, G.G, Zhang, X, Cheng, X. | 登録日 | 2014-08-12 | 公開日 | 2014-10-08 | 最終更新日 | 2023-09-20 | 実験手法 | X-RAY DIFFRACTION (2.489 Å) | 主引用文献 | Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence. Genes Dev., 28, 2014
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5MCT
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![BU of 5mct by Molmil](/molmil-images/mine/5mct) | New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins (complex p53DBD-LHG1) | 分子名称: | 1,2-ETHANEDIOL, Cellular tumor antigen p53, DNA, ... | 著者 | Golovenko, D, Rozenberg, H, Shakked, Z. | 登録日 | 2016-11-10 | 公開日 | 2018-06-13 | 最終更新日 | 2024-01-17 | 実験手法 | X-RAY DIFFRACTION (1.446 Å) | 主引用文献 | New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins. Structure, 26, 2018
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4R2Q
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![BU of 4r2q by Molmil](/molmil-images/mine/4r2q) | Wilms Tumor Protein (WT1) zinc fingers in complex with formylated DNA | 分子名称: | 1,2-ETHANEDIOL, DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*(5FC)P*GP*T)-3'), DNA (5'-D(*TP*AP*(5FC)P*GP*CP*CP*CP*AP*CP*GP*C)-3'), ... | 著者 | Hashimoto, H, Olanrewaju, Y.O, Zheng, Y, Wilson, G.G, Zhang, X, Cheng, X. | 登録日 | 2014-08-12 | 公開日 | 2014-10-08 | 最終更新日 | 2023-09-20 | 実験手法 | X-RAY DIFFRACTION (1.54 Å) | 主引用文献 | Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence. Genes Dev., 28, 2014
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4XQ8
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7TIB
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![BU of 7tib by Molmil](/molmil-images/mine/7tib) | Structure of the yeast clamp loader (Replication Factor C RFC) bound to the open sliding clamp (Proliferating Cell Nuclear Antigen PCNA) and primer-template DNA | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, DNA (5'-D(*AP*GP*AP*CP*AP*CP*TP*AP*CP*GP*AP*GP*TP*AP*CP*AP*TP*A)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*AP*TP*GP*TP*AP*CP*TP*CP*GP*TP*AP*GP*TP*GP*TP*CP*T)-3'), ... | 著者 | Gaubitz, C, Liu, X, Pajak, J, Stone, N, Hayes, J, Demo, G, Kelch, B.A. | 登録日 | 2022-01-13 | 公開日 | 2022-02-16 | 最終更新日 | 2024-02-28 | 実験手法 | ELECTRON MICROSCOPY (3.4 Å) | 主引用文献 | Cryo-EM structures reveal high-resolution mechanism of a DNA polymerase sliding clamp loader. Elife, 11, 2022
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8K8D
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1L9Z
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![BU of 1l9z by Molmil](/molmil-images/mine/1l9z) | Thermus aquaticus RNA Polymerase Holoenzyme/Fork-Junction Promoter DNA Complex at 6.5 A Resolution | 分子名称: | MAGNESIUM ION, RNA POLYMERASE, ALPHA SUBUNIT, ... | 著者 | Murakami, K.S, Masuda, S, Campbell, E.A, Muzzin, O, Darst, S.A. | 登録日 | 2002-03-27 | 公開日 | 2002-05-31 | 最終更新日 | 2024-02-14 | 実験手法 | X-RAY DIFFRACTION (6.5 Å) | 主引用文献 | Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex. Science, 296, 2002
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5MG7
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![BU of 5mg7 by Molmil](/molmil-images/mine/5mg7) | New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins (complex p53DBD-p53R2) | 分子名称: | Cellular tumor antigen p53, DNA, ZINC ION | 著者 | Rozenberg, H, Braeuning, B, Golovenko, D, Shakked, Z. | 登録日 | 2016-11-21 | 公開日 | 2018-06-13 | 最終更新日 | 2024-01-17 | 実験手法 | X-RAY DIFFRACTION (1.45 Å) | 主引用文献 | New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins. Structure, 26, 2018
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3UKG
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![BU of 3ukg by Molmil](/molmil-images/mine/3ukg) | Crystal structure of Rap1/DNA complex | 分子名称: | CALCIUM ION, DNA-binding protein RAP1, telomeric DNA | 著者 | Matot, B, Le Bihan, Y.-V, Gasparini, S, LeDu, M.H. | 登録日 | 2011-11-09 | 公開日 | 2011-12-07 | 最終更新日 | 2023-09-13 | 実験手法 | X-RAY DIFFRACTION (2.95 Å) | 主引用文献 | The orientation of the C-terminal domain of the Saccharomyces cerevisiae Rap1 protein is determined by its binding to DNA. Nucleic Acids Res., 40, 2012
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7XZX
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![BU of 7xzx by Molmil](/molmil-images/mine/7xzx) | Cryo-EM structure of the nucleosome in complex with p53 DNA-binding domain | 分子名称: | Cellular tumor antigen p53, DNA (193-MER), Histone H2A type 1-B/E, ... | 著者 | Nishimura, M, Nozawa, K, Takizawa, Y, Kurumizaka, H. | 登録日 | 2022-06-03 | 公開日 | 2022-10-12 | 最終更新日 | 2024-07-03 | 実験手法 | ELECTRON MICROSCOPY (4.53 Å) | 主引用文献 | Structural basis for p53 binding to its nucleosomal target DNA sequence. Pnas Nexus, 1, 2022
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5MCW
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![BU of 5mcw by Molmil](/molmil-images/mine/5mcw) | New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins (complex p53DBD-LWC2) | 分子名称: | Cellular tumor antigen p53, DNA, FORMYL GROUP, ... | 著者 | Golovenko, D, Rozenberg, H, Shakked, Z. | 登録日 | 2016-11-10 | 公開日 | 2018-06-13 | 最終更新日 | 2024-01-17 | 実験手法 | X-RAY DIFFRACTION (1.897 Å) | 主引用文献 | New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins. Structure, 26, 2018
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