PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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8DQW	Open state of Rad24-RFC:9-1-1 bound to a 5' ss/dsDNA junction 分子名称: DDC1 isoform 1, DNA (5'-D(P*CP*GP*TP*CP*CP*CP*TP*TP*CP*C)-3'), DNA (50-MER), ... 著者 Schrecker, M, Hite, R.K. 登録日 2022-07-20 公開日 2022-08-17 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (2.1 Å) 主引用文献 Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
1WD1	Crystal structures of the hyperthermophilic chromosomal protein Sac7d in complex with DNA decamers 分子名称: 5'-D(*CP*CP*TP*AP*CP*GP*TP*AP*GP*G)-3', DNA-binding proteins 7a/7b/7d 著者 Ko, T.-P, Chu, H.-M, Chen, C.-Y, Chou, C.-C, Wang, A.H.-J. 登録日 2004-05-10 公開日 2004-08-03 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structures of the hyperthermophilic chromosomal protein Sac7d in complex with DNA decamers. Acta Crystallogr.,Sect.D, 60, 2004
6MQ8	Binary structure of DNA polymerase eta in complex with templating hypoxanthine 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*IP*AP*TP*GP*AP*CP*GP*CP*T)-3'), ... 著者 Hawkins, M.A, Jung, H, Lee, S. 登録日 2018-10-09 公開日 2019-10-23 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.969 Å) 主引用文献 Structural insights into the bypass of the major deaminated purines by translesion synthesis DNA polymerase. Biochem.J., 2020
8DR6	Closed state of RFC:PCNA bound to a nicked dsDNA 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (32-MER), DNA (5'-D(P*CP*CP*CP*CP*CP*CP*GP*GP*CP*CP*CP*CP*CP*CP*CP*GP*GP*C)-3'), ... 著者 Schrecker, M, Hite, R.K. 登録日 2022-07-20 公開日 2022-08-24 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (2.39 Å) 主引用文献 Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
7U19	RFC:PCNA bound to nicked DNA 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA, MAGNESIUM ION, ... 著者 Liu, X, Gaubitz, C, Pajak, J, Kelch, B.A. 登録日 2022-02-20 公開日 2022-07-06 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 A second DNA binding site on RFC facilitates clamp loading at gapped or nicked DNA. Elife, 11, 2022
2CGP	CATABOLITE GENE ACTIVATOR PROTEIN/DNA COMPLEX, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE 分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, DNA (5'-D(*AP*TP*TP*AP*AP*TP*GP*TP*GP*AP*CP*AP*TP*AP*T)-3'), DNA (5'-D(*GP*TP*CP*AP*CP*AP*TP*TP*AP*AP*T)-3'), ... 著者 Passner, J.M, Steitz, T.A. 登録日 1997-01-31 公開日 1998-02-04 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The structure of a CAP-DNA complex having two cAMP molecules bound to each monomer. Proc.Natl.Acad.Sci.USA, 94, 1997
4XA5	Crystal structure of the pre-catalytic ternary complex of DNA polymerase lambda with a templating A and an incoming 8-oxo-dGTP 分子名称: 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ACETATE ION, DNA polymerase lambda, ... 著者 Burak, M.J, Guja, K.E, Garcia-Diaz, M. 登録日 2014-12-12 公開日 2016-02-10 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Nucleotide binding interactions modulate dNTP selectivity and facilitate 8-oxo-dGTP incorporation by DNA polymerase lambda. Nucleic Acids Res., 43, 2015
3CMT	Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (5'-D(*DTP*DTP*DTP*DTP*DTP*DCP*DCP*DCP*DAP*DCP*DCP*DTP*DTP*DTP*DT)-3'), DNA (5'-D(P*DGP*DGP*DTP*DGP*DGP*DG)-3'), ... 著者 Chen, Z, Yang, H, Pavletich, N.P. 登録日 2008-03-24 公開日 2008-05-20 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures. Nature, 453, 2008
4RNN	Crystal structure of human polymerase eta inserting dGMPnPP opposite DNA template containing an abasic site 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA polymerase eta, GLYCEROL, ... 著者 Patra, A, Egli, M. 登録日 2014-10-24 公開日 2015-02-18 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.808 Å) 主引用文献 Structural and Kinetic Analysis of Nucleoside Triphosphate Incorporation Opposite an Abasic Site by Human Translesion DNA Polymerase eta. J.Biol.Chem., 290, 2015
4XUS	Crystal structure of the pre-catalytic ternary complex of DNA polymerase lambda with a templating A and an incoming dTTP 分子名称: 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE, DNA (5'-D(*CP*AP*GP*TP*A)-3'), DNA (5'-D(*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*G)-3'), ... 著者 Burak, M.J, Guja, K.E, Garcia-Diaz, M. 登録日 2015-01-26 公開日 2016-02-03 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Nucleotide binding interactions modulate dNTP selectivity and facilitate 8-oxo-dGTP incorporation by DNA polymerase lambda. Nucleic Acids Res., 43, 2015
2JEF	The Molecular Basis of Selectivity of Nucleotide Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state and X-Ray Crystallography of Correct and Incorrect Pairing 分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*DOC)-3', 5'-D(*TP*CP*AP*CP*BZGP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP CP*CP*C)-3', ... 著者 Eoff, R.L, Angel, K.C, Kosekov, I.D, Egli, M, Guengerich, F.P. 登録日 2007-01-17 公開日 2007-03-13 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.17 Å) 主引用文献 Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus Solfataricus DNA Polymerase Dpo4: Steady-State and Pre-Steady-State Kinetics and X-Ray Crystallography of Correct and Incorrect Pairing. J.Biol.Chem., 282, 2007
1WVL	Crystal Structure of Multimeric DNA-binding Protein Sac7d-GCN4 with DNA decamer 分子名称: 5'-D(*CP*CP*TP*AP*TP*AP*TP*AP*GP*G)-3', DNA-binding proteins 7a/7b/7d, GCN4 著者 Wu, S.W, Wang, A.H. 登録日 2004-12-16 公開日 2005-08-02 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Design and characterization of a multimeric DNA binding protein using Sac7d and GCN4 as templates Proteins, 60, 2005
9ANT	ANTENNAPEDIA HOMEODOMAIN-DNA COMPLEX 分子名称: ANTENNAPEDIA HOMEODOMAIN, DNA (5'-D(*AP*GP*AP*AP*AP*GP*CP*CP*AP*TP*TP*AP*GP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)-3'), ... 著者 Fraenkel, E, Pabo, C.O. 登録日 1998-07-02 公開日 1998-10-14 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Comparison of X-ray and NMR structures for the Antennapedia homeodomain-DNA complex. Nat.Struct.Biol., 5, 1998
5MCU	New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins (complex p53DBD-LHG2) 分子名称: 1,2-ETHANEDIOL, Cellular tumor antigen p53, DNA, ... 著者 Golovenko, D, Rozenberg, H, Shakked, Z. 登録日 2016-11-10 公開日 2018-06-13 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins. Structure, 26, 2018
4R2S	Wilms Tumor Protein (WT1) Q369P zinc fingers in complex with methylated DNA 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*(5CM)P*GP*T)-3'), DNA (5'-D(*TP*AP*(5CM)P*GP*CP*CP*CP*AP*CP*GP*C)-3'), ... 著者 Hashimoto, H, Olanrewaju, Y.O, Zheng, Y, Wilson, G.G, Zhang, X, Cheng, X. 登録日 2014-08-12 公開日 2014-10-08 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.489 Å) 主引用文献 Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence. Genes Dev., 28, 2014
5MCT	New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins (complex p53DBD-LHG1) 分子名称: 1,2-ETHANEDIOL, Cellular tumor antigen p53, DNA, ... 著者 Golovenko, D, Rozenberg, H, Shakked, Z. 登録日 2016-11-10 公開日 2018-06-13 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.446 Å) 主引用文献 New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins. Structure, 26, 2018
4R2Q	Wilms Tumor Protein (WT1) zinc fingers in complex with formylated DNA 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*(5FC)P*GP*T)-3'), DNA (5'-D(*TP*AP*(5FC)P*GP*CP*CP*CP*AP*CP*GP*C)-3'), ... 著者 Hashimoto, H, Olanrewaju, Y.O, Zheng, Y, Wilson, G.G, Zhang, X, Cheng, X. 登録日 2014-08-12 公開日 2014-10-08 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.54 Å) 主引用文献 Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence. Genes Dev., 28, 2014
4XQ8	Human DNA polymerase lambda- MgdATP binary complex and complex with 6 paired DNA 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(P*GP*TP*AP*CP*TP*G)-3'), ... 著者 Tsai, M.D, Liu, M.S. 登録日 2015-01-19 公開日 2016-02-24 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.798 Å) 主引用文献 Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda J.Am.Chem.Soc., 138, 2016
7TIB	Structure of the yeast clamp loader (Replication Factor C RFC) bound to the open sliding clamp (Proliferating Cell Nuclear Antigen PCNA) and primer-template DNA 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (5'-D(*AP*GP*AP*CP*AP*CP*TP*AP*CP*GP*AP*GP*TP*AP*CP*AP*TP*A)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*AP*TP*GP*TP*AP*CP*TP*CP*GP*TP*AP*GP*TP*GP*TP*CP*T)-3'), ... 著者 Gaubitz, C, Liu, X, Pajak, J, Stone, N, Hayes, J, Demo, G, Kelch, B.A. 登録日 2022-01-13 公開日 2022-02-16 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Cryo-EM structures reveal high-resolution mechanism of a DNA polymerase sliding clamp loader. Elife, 11, 2022
8K8D	Crystal structure of C/EBPbeta BZIP domain bound to a high affinity DNA 分子名称: CCAAT/enhancer-binding protein beta, DNA (5'-D(*CP*AP*TP*TP*AP*CP*GP*TP*AP*AP*TP*G)-3') 著者 Min, J.R, Chen, S.Z, Liu, K. 登録日 2023-07-29 公開日 2024-03-06 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural basis for specific DNA sequence recognition by the transcription factor NFIL3. J.Biol.Chem., 300, 2024
1L9Z	Thermus aquaticus RNA Polymerase Holoenzyme/Fork-Junction Promoter DNA Complex at 6.5 A Resolution 分子名称: MAGNESIUM ION, RNA POLYMERASE, ALPHA SUBUNIT, ... 著者 Murakami, K.S, Masuda, S, Campbell, E.A, Muzzin, O, Darst, S.A. 登録日 2002-03-27 公開日 2002-05-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (6.5 Å) 主引用文献 Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex. Science, 296, 2002
5MG7	New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins (complex p53DBD-p53R2) 分子名称: Cellular tumor antigen p53, DNA, ZINC ION 著者 Rozenberg, H, Braeuning, B, Golovenko, D, Shakked, Z. 登録日 2016-11-21 公開日 2018-06-13 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins. Structure, 26, 2018
3UKG	Crystal structure of Rap1/DNA complex 分子名称: CALCIUM ION, DNA-binding protein RAP1, telomeric DNA 著者 Matot, B, Le Bihan, Y.-V, Gasparini, S, LeDu, M.H. 登録日 2011-11-09 公開日 2011-12-07 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 The orientation of the C-terminal domain of the Saccharomyces cerevisiae Rap1 protein is determined by its binding to DNA. Nucleic Acids Res., 40, 2012
7XZX	Cryo-EM structure of the nucleosome in complex with p53 DNA-binding domain 分子名称: Cellular tumor antigen p53, DNA (193-MER), Histone H2A type 1-B/E, ... 著者 Nishimura, M, Nozawa, K, Takizawa, Y, Kurumizaka, H. 登録日 2022-06-03 公開日 2022-10-12 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (4.53 Å) 主引用文献 Structural basis for p53 binding to its nucleosomal target DNA sequence. Pnas Nexus, 1, 2022
5MCW	New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins (complex p53DBD-LWC2) 分子名称: Cellular tumor antigen p53, DNA, FORMYL GROUP, ... 著者 Golovenko, D, Rozenberg, H, Shakked, Z. 登録日 2016-11-10 公開日 2018-06-13 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.897 Å) 主引用文献 New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins. Structure, 26, 2018

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