Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7BW4
DownloadVisualize
BU of 7bw4 by Molmil
Structure of the RNA-dependent RNA polymerase from SARS-CoV-2
分子名称: Non-structural protein 7, Non-structural protein 8, RNA-directed RNA polymerase, ...
著者Peng, Q, Peng, R, Shi, Y.
登録日2020-04-13
公開日2020-05-27
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural and Biochemical Characterization of the nsp12-nsp7-nsp8 Core Polymerase Complex from SARS-CoV-2.
Cell Rep, 31, 2020
7BWF
DownloadVisualize
BU of 7bwf by Molmil
YoeB-YefM complex from Staphylococcus aureus
分子名称: Addiction module antitoxin RelB, Antitoxin
著者Lee, B.-J, Eun, H.-J.
登録日2020-04-14
公開日2020-05-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of the YoeBSa1-YefMSa1 complex from Staphylococcus aureus.
Biochem.Biophys.Res.Commun., 527, 2020
7BJ1
DownloadVisualize
BU of 7bj1 by Molmil
Crystal structure of SMYD3 with diperodon S enantiomer bound to allosteric site
分子名称: ACETATE ION, Diperodon (S-enantiomer), GLYCEROL, ...
著者Talibov, V.O, Cederfelt, D, Dobritzsch, D, Danielson, U.H.
登録日2021-01-13
公開日2021-03-03
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.61 Å)
主引用文献Discovery of an Allosteric Ligand Binding Site in SMYD3 Lysine Methyltransferase
Chembiochem, 22, 2021
3S9S
DownloadVisualize
BU of 3s9s by Molmil
Ligand binding domain of PPARgamma complexed with a benzimidazole partial agonist
分子名称: 1-(3,4-dichlorobenzyl)-2-methyl-N-[(1R)-1-phenylpropyl]-1H-benzimidazole-5-carboxamide, Nuclear receptor coactivator 1, Peroxisome proliferator-activated receptor gamma
著者Lambert, M.H, Xu, R.X.
登録日2011-06-02
公開日2012-06-06
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Discovery of GSK1997132B a novel centrally penetrant benzimidazole PPARgamma partial agonist.
Bioorg.Med.Chem.Lett., 21, 2011
7RWS
DownloadVisualize
BU of 7rws by Molmil
Structure of SAVED domain of Cap5 from Lactococcus lactis in complex with cGAMP
分子名称: 3'2'-cGAMP, SAVED domain-containing protein
著者Huang, R.H, Chakravarti, A, Fatma, S.
登録日2021-08-20
公開日2021-11-10
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Molecular mechanisms of the CdnG-Cap5 antiphage defense system employing 3',2'-cGAMP as the second messenger.
Nat Commun, 12, 2021
6Y2R
DownloadVisualize
BU of 6y2r by Molmil
Escherichia coli R255A RnlA endoribonuclease (single alanine mutant of RnlA)
分子名称: mRNA endoribonuclease toxin LS
著者Garcia-Rodriguez, G, Loris, R.
登録日2020-02-17
公開日2021-05-12
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.89 Å)
主引用文献Alternative dimerization is required for activity and inhibition of the HEPN ribonuclease RnlA.
Nucleic Acids Res., 49, 2021
6Y2Q
DownloadVisualize
BU of 6y2q by Molmil
Escherichia coli RnlA endoribonuclease
分子名称: CHLORIDE ION, mRNA endoribonuclease toxin LS
著者Garcia-Rodriguez, G, Loris, R.
登録日2020-02-17
公開日2021-05-12
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.99 Å)
主引用文献Alternative dimerization is required for activity and inhibition of the HEPN ribonuclease RnlA.
Nucleic Acids Res., 49, 2021
8GY6
DownloadVisualize
BU of 8gy6 by Molmil
Structure of SARS-CoV-2 RNA-dependent RNA polymerase with gossypol binding
分子名称: Gossypol, Non-structural protein 7, Non-structural protein 8, ...
著者Wang, W, Ren, M, Li, F.
登録日2022-09-21
公開日2023-11-01
実験手法ELECTRON MICROSCOPY
主引用文献Structure of SARS-CoV-2 RNA-dependent RNA polymerase with gossypol binding
To Be Published
7VRC
DownloadVisualize
BU of 7vrc by Molmil
Structure of the Yeast SNF11/SNF2 complex
分子名称: Transcription regulatory protein SNF11, XXYS1_4_G0032080.mRNA.1.CDS.1
著者Cheng, Y, Chen, F, Zhou, H, Long, J.
登録日2021-10-22
公開日2022-05-25
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.147 Å)
主引用文献Structure of the Yeast SNF11/SNF2 complex
To Be Published
7VRB
DownloadVisualize
BU of 7vrb by Molmil
Structure of the Human BRG1/SS18 complex
分子名称: SMARCA4 protein,Protein SSXT
著者Cheng, Y, Chen, F, Zhou, H, Long, J.
登録日2021-10-22
公開日2022-05-25
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.389 Å)
主引用文献Phase transition and remodeling complex assembly are important for SS18-SSX oncogenic activity in synovial sarcomas.
Nat Commun, 13, 2022
7VQT
DownloadVisualize
BU of 7vqt by Molmil
Crystal structure of LSD1 in complex with compound 5
分子名称: 3-[3,5-bis(fluoranyl)-2-[(2-fluoranylpyridin-4-yl)methoxy]phenyl]propanal, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
著者Niwa, H, Koda, Y, Sato, S, Yamamoto, H, Koyama, H, Umehara, T.
登録日2021-10-20
公開日2022-06-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.91 Å)
主引用文献Design and Synthesis of Tranylcypromine-Derived LSD1 Inhibitors with Improved hERG and Microsomal Stability Profiles.
Acs Med.Chem.Lett., 13, 2022
7VQS
DownloadVisualize
BU of 7vqs by Molmil
Crystal structure of LSD1 in complex with compound 4
分子名称: 3-[3,5-bis(fluoranyl)-2-[(2-fluoranylpyridin-3-yl)methoxy]phenyl]propanal, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
著者Niwa, H, Koda, Y, Sato, S, Yamamoto, H, Koyama, H, Umehara, T.
登録日2021-10-20
公開日2022-06-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.94 Å)
主引用文献Design and Synthesis of Tranylcypromine-Derived LSD1 Inhibitors with Improved hERG and Microsomal Stability Profiles.
Acs Med.Chem.Lett., 13, 2022
7VQU
DownloadVisualize
BU of 7vqu by Molmil
Crystal structure of LSD1 in complex with compound S1427
分子名称: 3-[3,5-bis(fluoranyl)-2-[(2-fluoranylpyridin-3-yl)methoxy]phenyl]propanal, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
著者Niwa, H, Koda, Y, Sato, S, Yamamoto, H, Koyama, H, Umehara, T.
登録日2021-10-20
公開日2022-06-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.94 Å)
主引用文献Design and Synthesis of Tranylcypromine-Derived LSD1 Inhibitors with Improved hERG and Microsomal Stability Profiles.
Acs Med.Chem.Lett., 13, 2022
7SBE
DownloadVisualize
BU of 7sbe by Molmil
Structure of the K. lactis telomerase RNA binding domain
分子名称: Telomerase reverse transcriptase
著者Skordalakes, E, Tzfati, Y.
登録日2021-09-24
公開日2022-09-21
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Structure of the K. lactis telomerase RNA binding domain
Int J Mol Sci, 2022
3VT7
DownloadVisualize
BU of 3vt7 by Molmil
Crystal structures of rat VDR-LBD with W282R mutation
分子名称: 5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL, COACTIVATOR PEPTIDE DRIP, Vitamin D3 receptor
著者Nakabayashi, M, Shimizu, M, Ikura, T, Ito, N.
登録日2012-05-19
公開日2013-05-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structures of hereditary vitamin D-resistant rickets-associated vitamin D receptor mutants R270L and W282R bound to 1,25-dihydroxyvitamin D3 and synthetic ligands.
J.Med.Chem., 56, 2013
3GJ7
DownloadVisualize
BU of 3gj7 by Molmil
Crystal structure of human RanGDP-Nup153ZnF12 complex
分子名称: GTP-binding nuclear protein Ran, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Partridge, J.R, Schwartz, T.U.
登録日2009-03-07
公開日2009-08-04
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Crystallographic and Biochemical Analysis of the Ran-binding Zinc Finger Domain.
J.Mol.Biol., 391, 2009
5ZB1
DownloadVisualize
BU of 5zb1 by Molmil
Monomeric crystal structure of orf57 from KSHV
分子名称: ORF57, ZINC ION
著者Gao, Z.Q, Yuan, F, Lan, K, Dong, Y.H.
登録日2018-02-09
公開日2018-08-08
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (3.061 Å)
主引用文献The crystal structure of KSHV ORF57 reveals dimeric active sites important for protein stability and function.
PLoS Pathog., 14, 2018
2ATH
DownloadVisualize
BU of 2ath by Molmil
Crystal structure of the ligand binding domain of human PPAR-gamma im complex with an agonist
分子名称: 2-{5-[3-(7-PROPYL-3-TRIFLUOROMETHYLBENZO[D]ISOXAZOL-6-YLOXY)PROPOXY]INDOL-1-YL}ETHANOIC ACID, Peroxisome proliferator activated receptor gamma
著者Mahindroo, N, Huang, C.-F, Wu, S.-Y, Hsieh, H.-P.
登録日2005-08-25
公開日2006-08-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.28 Å)
主引用文献Novel indole-based peroxisome proliferator-activated receptor agonists: design, SAR, structural biology, and biological activities
J.Med.Chem., 48, 2005
3GJ4
DownloadVisualize
BU of 3gj4 by Molmil
Crystal structure of human RanGDP-Nup153ZnF3 complex
分子名称: GTP-binding nuclear protein Ran, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Partridge, J.R, Schwartz, T.U.
登録日2009-03-07
公開日2009-08-04
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystallographic and Biochemical Analysis of the Ran-binding Zinc Finger Domain.
J.Mol.Biol., 391, 2009
6YYT
DownloadVisualize
BU of 6yyt by Molmil
Structure of replicating SARS-CoV-2 polymerase
分子名称: RNA product, ZINC ION, nsp12, ...
著者Hillen, H.S, Kokic, G, Farnung, L, Dienemann, C, Tegunov, D, Cramer, P.
登録日2020-05-06
公開日2020-05-13
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Structure of replicating SARS-CoV-2 polymerase.
Nature, 584, 2020
8R6U
DownloadVisualize
BU of 8r6u by Molmil
Structure of the SFTSV L protein in a transcription-priming state without capped RNA [TRANSCRIPTION-PRIMING (in vitro)]
分子名称: MAGNESIUM ION, RNA (5'-R(P*CP*UP*GP*GP*GP*CP*GP*GP*UP*CP*UP*UP*UP*GP*UP*GP*U)-3'), RNA primer, ...
著者Williams, H.M, Thorkelsson, S.R, Vogel, D, Busch, C, Milewski, M, Cusack, S, Grunewald, K, Quemin, E.R.J, Rosenthal, M.
登録日2023-11-23
公開日2024-04-24
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (2.98 Å)
主引用文献Structural snapshots of phenuivirus cap-snatching and transcription.
Nucleic Acids Res., 52, 2024
7V5V
DownloadVisualize
BU of 7v5v by Molmil
LysR family transcriptional regulator RipR from Salmonella Typhimurium
分子名称: RipR
著者Ki, N, Ha, N.-C.
登録日2021-08-18
公開日2022-08-24
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献The activation mechanism of the itaconic acid-responsive LTTR RipR in the pathogenesis of the foodborne-pathogen Salmonella enterica
To Be Published
8R6Y
DownloadVisualize
BU of 8r6y by Molmil
Structure of the SFTSV L protein stalled in a transcription-specific early elongation state with bound capped RNA [TRANSCRIPTION-EARLY-ELONGATION]
分子名称: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine, MAGNESIUM ION, RNA (5'-R(*(M7G)*AP*AP*A)-3'), ...
著者Williams, H.M, Thorkelsson, S.R, Vogel, D, Busch, C, Milewski, M, Cusack, S, Grunewald, K, Quemin, E.R.J, Rosenthal, M.
登録日2023-11-23
公開日2024-04-24
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural snapshots of phenuivirus cap-snatching and transcription.
Nucleic Acids Res., 52, 2024
8R6W
DownloadVisualize
BU of 8r6w by Molmil
Structure of the SFTSV L protein in a transcription-priming state with bound capped RNA [TRANSCRIPTION-PRIMING]
分子名称: RNA (5'-R(*(M7G)*AP*AP*A)-3'), RNA (5'-R(*AP*CP*AP*C)-3'), RNA (5'-R(*AP*CP*AP*CP*AP*GP*AP*GP*AP*CP*GP*CP*CP*CP*AP*G)-3'), ...
著者Williams, H.M, Thorkelsson, S.R, Vogel, D, Busch, C, Milewski, M, Cusack, S, Grunewald, K, Quemin, E.R.J, Rosenthal, M.
登録日2023-11-23
公開日2024-04-24
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3.35 Å)
主引用文献Structural snapshots of phenuivirus cap-snatching and transcription.
Nucleic Acids Res., 52, 2024
3VHW
DownloadVisualize
BU of 3vhw by Molmil
Crystal structure of the human vitamin D receptor ligand binding domain complexed with 4-MP
分子名称: Vitamin D3 receptor, methyl (1S,3E)-3-{(2R)-2-[(1R,3aS,4E,7aR)-4-{(2Z)-2-[(3R,4S,5R)-3,5-dihydroxy-4-(3-hydroxypropoxy)-2-methylidenecyclohexylidene]ethylidene}-7a-methyloctahydro-1H-inden-1-yl]propylidene}-1-ethyl-2-oxocyclopentanecarboxylate (non-preferred name)
著者Kakuda, S, Takimoto-Kamimura, M.
登録日2011-09-08
公開日2013-03-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.43 Å)
主引用文献Synthesis of novel C-2 substituted vitamin D derivatives having ringed side chains and their biological evaluation on bone
J.Steroid Biochem.Mol.Biol., 136, 2013

224931

件を2024-09-11に公開中

PDB statisticsPDBj update infoContact PDBjnumon