PDB: 47120 件ウェブページステータス検索Chemie searchBIRD

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2I00	Crystal structure of acetyltransferase (GNAT family) from Enterococcus faecalis 分子名称: Acetyltransferase, GNAT family 著者 Zhang, R, Zhou, M, Moy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2006-08-09 公開日 2006-09-19 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 The crystal structure of the acetyltransferase (GNAT family) from Enterococcus faecalis To be Published, 2006
2XS4	Structure of karilysin catalytic MMP domain in complex with magnesium 分子名称: CHLORIDE ION, KARILYSIN PROTEASE, MAGNESIUM ION, ... 著者 Cerda-Costa, N, Guevara, T, Karim, A.Y, Ksiazek, M, Nguyen, K.-A, Arolas, J.L, Potempa, J, Gomis-Ruth, F.X. 登録日 2010-09-24 公開日 2010-11-03 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 The Structure of the Catalytic Domain of Tannerella Forsythia Karilysin Reveals It is a Bacterial Xenologue of Animal Matrix Metalloproteinases. Mol.Microbiol., 79, 2011
2MUU	The Proteolytic Activity of Ubiquitin-specific Protease 28 Is Modulated by the N-terminal Domain 分子名称: Ubiquitin carboxyl-terminal hydrolase 28 著者 Wen, Y, Shi, L, Zhang, N. 登録日 2014-09-17 公開日 2016-04-20 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 The N-terminal ubiquitin-binding region of ubiquitin-specific protease 28 modulates its deubiquitination function: NMR structural and mechanistic insights. Biochem.J., 471, 2015
7Q8Q	Peptide RLSAKP in complex with human cathepsin V C25S mutant 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, Cathepsin L2, ... 著者 Loboda, J, Sosnowski, P, Tusar, L, Vidmar, R, Vizovisek, M, Horvat, J, Kosec, G, Impens, F, Demol, H, Turk, B, Gevaert, K, Turk, D. 登録日 2021-11-11 公開日 2022-11-23 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.13 Å) 主引用文献 Proteomic data and structure analysis combined reveal interplay of structural rigidity and flexibility on selectivity of cysteine cathepsins. Commun Biol, 6, 2023
7TJA	Structure of the Light Harvesting Complex PE545 from Proteomonas sulcata 分子名称: 15,16-DIHYDROBILIVERDIN, MAGNESIUM ION, PHYCOERYTHROBILIN, ... 著者 Jeffrey, P.D, Spangler, L.C, Scholes, G.D. 登録日 2022-01-15 公開日 2022-04-20 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 Controllable Phycobilin Modification: An Alternative Photoacclimation Response in Cryptophyte Algae. Acs Cent.Sci., 8, 2022
7Q8P	Peptide LLKVAL in complex with human cathepsin V C25S mutant 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, Cathepsin L2, ... 著者 Loboda, J, Sosnowski, P, Tusar, L, Vidmar, R, Vizovisek, M, Horvat, J, Kosec, G, Impens, F, Demol, H, Turk, B, Gevaert, K, Turk, D. 登録日 2021-11-11 公開日 2022-11-23 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.71 Å) 主引用文献 Proteomic data and structure analysis combined reveal interplay of structural rigidity and flexibility on selectivity of cysteine cathepsins. Commun Biol, 6, 2023
2NOY	Crystal structure of transthyretin mutant I84S at PH 7.5 分子名称: Transthyretin 著者 Pasquato, N, Berni, R, Folli, C, Alfieri, B, Cendron, L, Zanotti, G. 登録日 2006-10-26 公開日 2007-01-16 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Acidic pH-induced conformational changes in amyloidogenic mutant transthyretin J.Mol.Biol., 366, 2007
7U96	SAAV pH 5.5 capsid structure 分子名称: Capsid protein 著者 Mietzsch, M, McKenna, R. 登録日 2022-03-10 公開日 2022-04-13 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (2.14 Å) 主引用文献 Characterization of the Serpentine Adeno-Associated Virus (SAAV) Capsid Structure: Receptor Interactions and Antigenicity. J.Virol., 96, 2022
7EY2	Bifunctional xylosidase/glucosidase LXYL D300N mutant with intermediate substrate xylose 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-D-xylosidase/beta-D-glucosidase, Xylitol, ... 著者 Gong, W.M, Yang, L.Y. 登録日 2021-05-29 公開日 2022-06-01 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.43 Å) 主引用文献 Bifunctional xylosidase/glucosidase LXYL with intermediate substrate xylose To Be Published
7U94	SAAV pH 7.4 capsid structure 分子名称: Capsid protein 著者 Mietzsch, M, McKenna, R. 登録日 2022-03-10 公開日 2022-04-13 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (3.25 Å) 主引用文献 Characterization of the Serpentine Adeno-Associated Virus (SAAV) Capsid Structure: Receptor Interactions and Antigenicity. J.Virol., 96, 2022
7LIW	Local refinement of human ATP citrate lyase E599Q mutant ASH domain 分子名称: (2S)-2-hydroxy-2-[2-oxo-2-(phosphonooxy)ethyl]butanedioic acid, ADENOSINE-5'-DIPHOSPHATE, ATP-citrate synthase, ... 著者 Wei, X, Marmorstein, R. 登録日 2021-01-28 公開日 2021-05-19 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (2.85 Å) 主引用文献 Reply to: Acetyl-CoA is produced by the citrate synthase homology module of ATP-citrate lyase. Nat.Struct.Mol.Biol., 28, 2021
8PUV	Trimeric prM/E spike of Tick-borne encephalitis virus immature particle 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope protein E, Protein prM 著者 Fuzik, T, Plevka, P, Smerdova, L, Novacek, J. 登録日 2023-07-17 公開日 2024-07-17 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 The structure of immature tick-borne encephalitis virus supports the collapse model of flavivirus maturation. Sci Adv, 10, 2024
5MC1	Crystal Structure of Asp276Asn mutant of Human Prolidase with Mn ions and GlyPro ligand 分子名称: GLYCEROL, GLYCINE, MANGANESE (II) ION, ... 著者 Wilk, P, Mueller, U, Dobbek, H, Weiss, M.S. 登録日 2016-11-09 公開日 2017-12-20 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.43 Å) 主引用文献 Structural basis for prolidase deficiency disease mechanisms. FEBS J., 285, 2018
2XW0	Human serum albumin complexed with dansyl-L-phenylalanine 分子名称: DANSYL-L-PHENYLALANINE, SERUM ALBUMIN 著者 Ryan, A.J, Curry, S. 登録日 2010-10-28 公開日 2010-11-10 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural Basis of Binding of Fluorescent, Site-Specific Dansylated Amino Acids to Human Serum Albumin. J.Struct.Biol., 174, 2011
7TJW	Yeast ATP synthase F1 region State 1catalytic(e-h) with 10 mM ATP 分子名称: ADENOSINE-5'-TRIPHOSPHATE, ATP synthase subunit alpha, ATP synthase subunit beta, ... 著者 Guo, H, Rubinstein, J.L. 登録日 2022-01-17 公開日 2022-04-20 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Structure of ATP synthase under strain during catalysis. Nat Commun, 13, 2022
8Q2G	X-ray structure of LysECD7 endolysin against Gram-negative bacteria 分子名称: Peptidoglycan L-alanyl-D-glutamate endopeptidase 著者 Prudnikova, T, Grinkevich, P, Vasina, D.V. 登録日 2023-08-02 公開日 2024-07-31 最終更新日 2024-08-07 実験手法 X-RAY DIFFRACTION (2.49 Å) 主引用文献 Development of novel antimicrobials with engineered endolysin LysECD7-SMAP to combat Gram-negative bacterial infections. J.Biomed.Sci., 31, 2024
8Q5N	Apo form of restriction endonuclease NhoI. 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, Restriction endonuclease (NhoI) 著者 Rafalski, D, Krakowska, A, Bochtler, M. 登録日 2023-08-09 公開日 2024-07-17 最終更新日 2024-08-07 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Structural analysis of the BisI family of modification dependent restriction endonucleases. Nucleic Acids Res., 2024
3JVJ	Crystal structure of the bromodomain 1 in mouse Brd4 分子名称: 1,2-ETHANEDIOL, Bromodomain-containing protein 4, GLYCEROL 著者 Vollmuth, F, Blankenfeldt, W, Geyer, M. 登録日 2009-09-17 公開日 2009-10-13 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Structures of the Dual Bromodomains of the P-TEFb-activating Protein Brd4 at Atomic Resolution J.Biol.Chem., 284, 2009
7TNK	Complex GNNN of AMPA-subtype iGluR GluA2 in complex with auxiliary subunit gamma2 (Stargazin) at low glutamate concentration (20 uM) in the presence of cyclothiazide (100 uM) 分子名称: CYCLOTHIAZIDE, GLUTAMIC ACID, Isoform Flip of Glutamate receptor 2,Voltage-dependent calcium channel gamma-3 subunit chimera 著者 Yelshanskaya, M.V, Sobolevsky, A.I. 登録日 2022-01-21 公開日 2022-04-20 最終更新日 2022-05-18 実験手法 ELECTRON MICROSCOPY (4.5 Å) 主引用文献 Opening of glutamate receptor channel to subconductance levels. Nature, 605, 2022
2YBN	Nitrate X-ray induced reduction on HEWL crystals (28.6 MGy) 分子名称: LYSOZYME C, NITRITE ION 著者 De la Mora, E, Carmichael, I, Garman, E.F. 登録日 2011-03-08 公開日 2011-07-20 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Effective Scavenging at Cryotemperatures: Further Increasing the Dose Tolerance of Protein Crystals. J.Synchrotron.Radiat., 18, 2011
2YC0	FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH R-2-HYDROXYGLUTARATE 分子名称: (2R)-2-hydroxypentanedioic acid, FE (II) ION, GLYCEROL, ... 著者 Chowdhury, R, Clifton, I.J, Schofield, C.J. 登録日 2011-03-10 公開日 2011-03-30 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 The oncometabolite 2-hydroxyglutarate inhibits histone lysine demethylases. EMBO Rep., 12, 2011
5MF1	Crystal structure of a C-terminally truncated trimeric ectodomain of the Chlamydomonas reinhardtii gamete fusion protein HAP2 分子名称: 2-acetamido-2-deoxy-beta-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, Fusion protein HAP2/GCS1 著者 Fedry, J, Rey, F.A, Krey, T. 登録日 2016-11-17 公開日 2017-03-08 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 The Ancient Gamete Fusogen HAP2 Is a Eukaryotic Class II Fusion Protein. Cell, 168, 2017
7QXR	Azacoelenterazine-bound Renilla-type luciferase (AncFT) 分子名称: 3-(4-hydroxyphenyl)-8-[(4-hydroxyphenyl)methyl]-5-(phenylmethyl)-1$l^{4},4,7,8-tetrazabicyclo[4.3.0]nona-1(6),2,4-trien-9-one, Fragment transplantation onto a hyperstable ancestor of haloalkane dehalogenases and Renilla luciferase (Anc-FT) 著者 Marek, M, Schenkmayerova, A, Janin, Y.L. 登録日 2022-01-27 公開日 2022-12-07 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.052 Å) 主引用文献 Catalytic mechanism for Renilla-type luciferases Nat Catal, 2023
3JBQ	Domain Organization and Conformational Plasticity of the G Protein Effector, PDE6 分子名称: GafA domain of cone phosphodiesterase 6C, GafB domain of phosphodiesterase 2A, IgG1-kappa 2E8 heavy chain, ... 著者 Zhang, Z, He, F, Constantine, R, Baker, M.L, Baehr, W, Schmid, M.F, Wensel, T.G, Agosto, M.A. 登録日 2015-09-17 公開日 2015-09-30 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (11 Å) 主引用文献 Domain Organization and Conformational Plasticity of the G Protein Effector, PDE6. J.Biol.Chem., 290, 2015
7TNM	Complex GNGN2 of AMPA-subtype iGluR GluA2 in complex with auxiliary subunit gamma2 (Stargazin) at low glutamate concentration (20 uM) in the presence of cyclothiazide (100 uM) 分子名称: CYCLOTHIAZIDE, GLUTAMIC ACID, Isoform Flip of Glutamate receptor 2,Voltage-dependent calcium channel gamma-3 subunit chimera 著者 Yelshanskaya, M.V, Sobolevsky, A.I. 登録日 2022-01-21 公開日 2022-04-20 最終更新日 2022-05-18 実験手法 ELECTRON MICROSCOPY (4.74 Å) 主引用文献 Opening of glutamate receptor channel to subconductance levels. Nature, 605, 2022

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