PDB: 47120 件ウェブページステータス検索Chemie searchBIRD

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8P0C	Rubella virus p150 macro domain (apo) 分子名称: Non-structural polyprotein p200 著者 Stoll, G.A, Modis, Y. 登録日 2023-05-10 公開日 2024-01-17 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.72 Å) 主引用文献 Crystal structure and biochemical activity of the macrodomain from rubella virus p150. J.Virol., 98, 2024
2Y9P	Pex4p-Pex22p mutant II structure 分子名称: PEROXISOME ASSEMBLY PROTEIN 22, UBIQUITIN-CONJUGATING ENZYME E2-21 KDA 著者 Williams, C, van den Berg, M, Panjikar, S, Distel, B, Wilmanns, M. 登録日 2011-02-16 公開日 2012-02-29 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.25 Å) 主引用文献 Pex4P-Pex22P Structure To be Published
7S9Q	Ternary complex of DNA Polymerase Beta with Template Fapy-dG and an incoming dATP analog 分子名称: 2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]adenosine, DNA (5'-D(*CP*CP*GP*AP*CP*(FAP)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ... 著者 Freudenthal, B.D, Ryan, B.J, Smith, M.R. 登録日 2021-09-21 公開日 2022-08-03 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural Dynamics of a Common Mutagenic Oxidative DNA Lesion in Duplex DNA and during DNA Replication. J.Am.Chem.Soc., 144, 2022
2MIQ	Solution NMR Structure of PHD Type 1 Zinc Finger Domain 1 of Lysine-specific Demethylase Lid from Drosophila melanogaster, Northeast Structural Genomics Consortium (NESG) Target FR824J 分子名称: Lysine-specific demethylase lid, ZINC ION 著者 Xu, X, Eletsky, A, Shastry, R, Maglaqui, M, Janjua, H, Xiao, R, Everett, J.K, Sukumaran, D.K, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG), Chaperone-Enabled Studies of Epigenetic Regulation Enzymes (CEBS) 登録日 2013-12-17 公開日 2014-01-29 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Solution NMR Structure of PHD Type 1 Zinc Finger Domain 1 from Lysine-specific Demethylase Lid from Drosophila melanogaster, Northeast Structural Genomics Consortium (NESG) Target FR824J To be Published
7ACO	Crystal structure of E. coli HTH-type transcriptional regulator RcdA in complex with Tris at 1.80 A resolution 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, HTH-type transcriptional regulator RcdA 著者 Pietrzyk-Brzezinska, A.J, Cociurovscaia, A. 登録日 2020-09-11 公開日 2021-08-18 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.798 Å) 主引用文献 Structures of the TetR-like transcription regulator RcdA alone and in complexes with ligands. Proteins, 90, 2022
8OOW	Glutamine synthetase from Methermicoccus shengliensis at a resolution of 2.64 A 分子名称: 1,2-ETHANEDIOL, GLYCEROL, Glutamine synthetase, ... 著者 Mueller, M.-C, Lemaire, O.N, Wagner, T. 登録日 2023-04-06 公開日 2024-01-24 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.64 Å) 主引用文献 Differences in regulation mechanisms of glutamine synthetases from methanogenic archaea unveiled by structural investigations. Commun Biol, 7, 2024
8OOI	Full composite cryo-EM map of p97/VCP in ADP.Pi state 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... 著者 Cheng, T.C, Sakata, E, Schuetz, A.K. 登録日 2023-04-05 公開日 2024-01-31 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (2.61 Å) 主引用文献 Characterizing ATP processing by the AAA+ protein p97 at the atomic level. Nat.Chem., 16, 2024
7ACL	Crystal structure of E. coli HTH-type transcriptional regulator RcdA at 2.05 A resolution 分子名称: DI(HYDROXYETHYL)ETHER, HTH-type transcriptional regulator RcdA 著者 Pietrzyk-Brzezinska, A.J, Cociurovscaia, A. 登録日 2020-09-11 公開日 2021-08-18 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.049 Å) 主引用文献 Structures of the TetR-like transcription regulator RcdA alone and in complexes with ligands. Proteins, 90, 2022
7PP6	MUC2 Tubules of D1D2D3 domains 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... 著者 Javitt, G, Fass, D. 登録日 2021-09-13 公開日 2022-02-16 最終更新日 2022-05-25 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Helical self-assembly of a mucin segment suggests an evolutionary origin for von Willebrand factor tubules. Proc.Natl.Acad.Sci.USA, 119, 2022
7ACM	Crystal structure of E. coli HTH-type transcriptional regulator RcdA in complex with TMAO at 1.76 A resolution 分子名称: HTH-type transcriptional regulator RcdA, trimethylamine oxide 著者 Pietrzyk-Brzezinska, A.J, Cociurovscaia, A. 登録日 2020-09-11 公開日 2021-08-18 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.763 Å) 主引用文献 Structures of the TetR-like transcription regulator RcdA alone and in complexes with ligands. Proteins, 90, 2022
7S9L	Crystal Structure of DNA Polymerase Beta with Ring open intermediate Fapy-dG base-paired with a dC 分子名称: DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*(FAP)P*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*CP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... 著者 Freudenthal, B.D, Ryan, B.J. 登録日 2021-09-21 公開日 2022-08-03 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Structural Dynamics of a Common Mutagenic Oxidative DNA Lesion in Duplex DNA and during DNA Replication. J.Am.Chem.Soc., 144, 2022
7AAW	Thioredoxin Reductase from Bacillus cereus 分子名称: ACETATE ION, FLAVIN-ADENINE DINUCLEOTIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... 著者 Shoor, M, Gudim, I, Hersleth, H.-P, Hammerstad, M. 登録日 2020-09-04 公開日 2021-09-15 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Thioredoxin reductase from Bacillus cereus exhibits distinct reduction and NADPH-binding properties. Febs Open Bio, 11, 2021
7DQD	Crystal structure of the AMP-PNP-bound mutant A(S23C)3B(N64C)3 complex from enterococcus hirae V-ATPase 分子名称: GLYCEROL, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... 著者 Maruyama, S, Suzuki, K, Mizutani, K, Imai, F.L, Ishizuka-Katsura, Y, Shirouzu, M, Murata, T. 登録日 2020-12-23 公開日 2021-12-29 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.383 Å) 主引用文献 The combination of high-speed AFM and X-ray crystallography reveals rotary catalysis To Be Published
8OUE	The H/ACA RNP lobe of human telomerase with the dyskerin thumb loop in a semi-closed conformation 分子名称: H/ACA ribonucleoprotein complex subunit 1, H/ACA ribonucleoprotein complex subunit 2, H/ACA ribonucleoprotein complex subunit 3, ... 著者 Ghanim, G.E, Sekne, Z, van Roon, A.M.M, Balch, S, Nguyen, T.H.D. 登録日 2023-04-22 公開日 2024-01-31 最終更新日 2024-02-07 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 2.7 angstrom cryo-EM structure of human telomerase H/ACA ribonucleoprotein. Nat Commun, 15, 2024
5KJ5	Crystal structure of 2-aminomuconate 6-semialdehyde dehydrogenase N169D in complex with NAD+ 分子名称: 2-aminomuconate 6-semialdehyde dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE 著者 Yang, Y, Davis, I, Ha, U, Wang, Y, Shin, I, Liu, A. 登録日 2016-06-17 公開日 2016-11-09 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.113 Å) 主引用文献 A Pitcher-and-Catcher Mechanism Drives Endogenous Substrate Isomerization by a Dehydrogenase in Kynurenine Metabolism. J.Biol.Chem., 291, 2016
8OUF	The H/ACA RNP lobe of human telomerase with the dyskerin thumb loop in an open conformation 分子名称: H/ACA ribonucleoprotein complex subunit 1, H/ACA ribonucleoprotein complex subunit 2, H/ACA ribonucleoprotein complex subunit 3, ... 著者 Ghanim, G.E, Sekne, Z, van Roon, A.M.M, Balch, S, Nguyen, T.H.D. 登録日 2023-04-22 公開日 2024-01-31 最終更新日 2024-02-07 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 2.7 angstrom cryo-EM structure of human telomerase H/ACA ribonucleoprotein. Nat Commun, 15, 2024
8P0E	Rubella virus p150 macro domain in complex with ADP-ribose 分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, Non-structural polyprotein p200 著者 Stoll, G.A, Modis, Y. 登録日 2023-05-10 公開日 2024-01-17 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.59 Å) 主引用文献 Crystal structure and biochemical activity of the macrodomain from rubella virus p150. J.Virol., 98, 2024
7A9K	Co-substituted Keggin silicotungstate with covalent bond to proteinase K 分子名称: Co-substituted Keggin silicotungstate, Proteinase K, SULFATE ION 著者 Breibeck, J, Rompel, A. 登録日 2020-09-02 公開日 2021-10-06 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.62 Å) 主引用文献 Speciation of Transition-Metal-Substituted Keggin-Type Silicotungstates Affected by the Co-crystallization Conditions with Proteinase K. Inorg.Chem., 60, 2021
7A90	WT STING in complex with 3',3'-c-di[2'FdAM(PS)] 分子名称: 9-[(1~{R},3~{R},6~{R},8~{R},9~{R},10~{R},12~{R},15~{R},17~{R},18~{R})-17-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanylidene)-3,12-bis(sulfanyl)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]purin-6-amine, Stimulator of interferon protein 著者 Boura, E, Smola, M. 登録日 2020-09-01 公開日 2021-10-06 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (3.185 Å) 主引用文献 WT STING in complex with 3',3'-c-di[2'FdAM(PS)] To Be Published
7KBO	Reverse Transcriptase Diabody with S82bC, R83T Mutations Crystallized in C2 分子名称: 1,2-ETHANEDIOL, Single-chain scFv 著者 Chesterman, C, Arnold, E. 登録日 2020-10-02 公開日 2021-03-10 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Co-crystallization with diabodies: A case study for the introduction of synthetic symmetry. Structure, 29, 2021
7A9F	Co-substituted Keggin silicotungstate with covalent bond to proteinase K 分子名称: Co-substituted Keggin silicotungstate, Proteinase K, SULFATE ION 著者 Breibeck, J, Rompel, A. 登録日 2020-09-02 公開日 2021-10-06 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.62 Å) 主引用文献 Speciation of Transition-Metal-Substituted Keggin-Type Silicotungstates Affected by the Co-crystallization Conditions with Proteinase K. Inorg.Chem., 60, 2021
8P89	X-ray structure of cardiotoxic light chain H3 in complex to neutralizing nanobody B5 分子名称: CHLORIDE ION, Light chain H3, Nanobody B5 著者 Broggini, L, Ricagno, S. 登録日 2023-05-31 公開日 2024-01-31 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (3.187 Å) 主引用文献 Nanobodies counteract the toxicity of an amyloidogenic light chain by stabilizing a partially open dimeric conformation. J.Mol.Biol., 435, 2023
7POV	MUC2 Tubules of D1D2D3 domains 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... 著者 Javitt, G, Fass, D. 登録日 2021-09-10 公開日 2022-02-16 最終更新日 2022-05-25 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Helical self-assembly of a mucin segment suggests an evolutionary origin for von Willebrand factor tubules. Proc.Natl.Acad.Sci.USA, 119, 2022
2Z3Z	Prolyl tripeptidyl aminopeptidase mutant E636A complexd with an inhibitor 分子名称: Dipeptidyl aminopeptidase IV, SULFATE ION, [(2R)-1-(L-ALANYL-L-ISOLEUCYL)PYRROLIDIN-2-YL]BORONIC ACID 著者 Xu, Y, Nakajima, Y, Ito, K, Yoshimoto, T. 登録日 2007-06-09 公開日 2008-02-19 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Novel inhibitor for prolyl tripeptidyl aminopeptidase from Porphyromonas gingivalis and details of substrate-recognition mechanism J.Mol.Biol., 375, 2008
8P88	X-ray structure of cardiotoxic light chain H3 in complex to neutralizing nanobody C4 分子名称: CHLORIDE ION, Light Chain H3, Nanobody C4, ... 著者 Broggini, L, Ricagno, S. 登録日 2023-05-31 公開日 2024-01-31 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.022 Å) 主引用文献 Nanobodies counteract the toxicity of an amyloidogenic light chain by stabilizing a partially open dimeric conformation. J.Mol.Biol., 435, 2023

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