PDB: 3084 件ウェブページステータス検索Chemie searchBIRD

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8H3X	Bacteroide Fragilis Toxin in complex with nanobody 282 分子名称: Fragilysin, ZINC ION, nanobody 282 著者 Wen, Y, Guo, Y. 登録日 2022-10-09 公開日 2023-02-08 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.66 Å) 主引用文献 Screening and epitope characterization of diagnostic nanobody against total and activated Bacteroides fragilis toxin. Front Immunol, 14, 2023
8H3T	The crystal structure of AlpH 分子名称: AlpH, GLYCEROL 著者 Zhao, Y, Li, M, Jiang, M, Pan, L.F. 登録日 2022-10-09 公開日 2023-09-13 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.866 Å) 主引用文献 O-methyltransferase-like enzyme catalyzed diazo installation in polyketide biosynthesis. Nat Commun, 14, 2023
8GUE	Crystal Structure of narbomycin-bound cytochrome P450 PikC with the unnatural amino acid p-Acetyl-L-Phenylalanine incorporated at position 238 分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Cytochrome P450 monooxygenase PikC, ... 著者 Li, G.B, Pan, Y.J, Li, S.Y, Gao, X. 登録日 2022-09-11 公開日 2023-02-15 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Unnatural activities and mechanistic insights of cytochrome P450 PikC gained from site-specific mutagenesis by non-canonical amino acids. Nat Commun, 14, 2023
8GU7	Selective targeting of the Beclin 2-Atg14L coiled coil complex by stapled peptides promotes autophagy and endolysosomal trafficking of GPCRs 分子名称: Beclin 1-associated autophagy-related key regulator, Beclin-2 著者 Qiu, X, Zhao, Y. 登録日 2022-09-11 公開日 2023-07-26 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 The potent BECN2-ATG14 coiled-coil interaction is selectively critical for endolysosomal degradation of GPRASP1/GASP1-associated GPCRs. Autophagy, 19, 2023
8GT9	Selective targeting of the Beclin 2-Atg14L coiled coil complex by stapled peptides promotes autophagy and endolysosomal trafficking of GPCRs 分子名称: Beclin-2 著者 Qiu, X, Zhao, Y. 登録日 2022-09-07 公開日 2023-07-26 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 The potent BECN2-ATG14 coiled-coil interaction is selectively critical for endolysosomal degradation of GPRASP1/GASP1-associated GPCRs. Autophagy, 19, 2023
8GRQ	Cryo-EM structure of BRCA1/BARD1 bound to H2AK127-UbcH5c-Ub nucleosome 分子名称: BRCA1-associated RING domain protein 1, Breast cancer type 1 susceptibility protein, DNA (147-MER), ... 著者 Ai, H.S, Zebin, T, Zhiheng, D, Jiakun, T, Liying, Z, Jia-Bin, L, Man, P, Liu, L. 登録日 2022-09-02 公開日 2023-04-12 実験手法 ELECTRON MICROSCOPY (3.87 Å) 主引用文献 Synthetic E2-Ub-nucleosome conjugates for studying nucleosome ubiquitination. Chem, 2023
8GRM	Cryo-EM structure of PRC1 bound to H2AK119-UbcH5b-Ub nucleosome 分子名称: COMMD3 protein, DNA (144-MER), DNA (145-MER), ... 著者 Ai, H.S, Zebin, T, Zhihend, D, Jiakun, T, Liying, Z, Jia-Bin, L, Man, P, Liu, L. 登録日 2022-09-02 公開日 2023-04-12 実験手法 ELECTRON MICROSCOPY (3.05 Å) 主引用文献 Synthetic E2-Ub-nucleosome conjugates for studying nucleosome ubiquitination. Chem, 2023
8GPY	Crystal structure of Omicron BA.4/5 RBD in complex with a neutralizing antibody scFv 分子名称: Spike protein S1, scFv 著者 Gao, Y.X, Song, Z.D, Wang, W.M, Guo, Y. 登録日 2022-08-27 公開日 2023-06-28 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.51 Å) 主引用文献 Discovery and characterization of potent pan-variant SARS-CoV-2 neutralizing antibodies from individuals with Omicron breakthrough infection. Nat Commun, 14, 2023
8GOU	Omicron BA.4/5 SARS-CoV-2 S in complex with TH003 Fab 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, TH003 Fab heavy chain, ... 著者 Guo, Y, Zhang, G, Liang, J, Liu, F, Rao, Z. 登録日 2022-08-25 公開日 2023-06-28 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Discovery and characterization of potent pan-variant SARS-CoV-2 neutralizing antibodies from individuals with Omicron breakthrough infection. Nat Commun, 14, 2023
8GMM	Stenotrophomonas maltophilia Holo HphA 分子名称: HEME B/C, Hemophilin 著者 Shin, H.E, Moraes, T.F. 登録日 2023-03-26 公開日 2024-03-27 最終更新日 2024-06-12 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Prevalence of Slam-dependent hemophilins in Gram-negative bacteria. J.Bacteriol., 2024
8GM3	Vibrio harveyi Holo HphA 分子名称: HEME B/C, Hemophilin 著者 Pan, C, Shah, M, Moraes, T.F. 登録日 2023-03-24 公開日 2024-03-27 最終更新日 2024-06-12 実験手法 X-RAY DIFFRACTION (1.727 Å) 主引用文献 Prevalence of Slam-dependent hemophilins in Gram-negative bacteria. J.Bacteriol., 2024
8GLO	Haemophilus parainfluenzae Holo HphA 分子名称: CHLORIDE ION, HEME B/C, Hemophilin 著者 Shin, H.E, Ng, D, Moraes, T.F. 登録日 2023-03-22 公開日 2024-03-27 最終更新日 2024-06-12 実験手法 X-RAY DIFFRACTION (1.937 Å) 主引用文献 Prevalence of Slam-dependent hemophilins in Gram-negative bacteria. J.Bacteriol., 2024
8GH7	142D6 bound to BIR3-XIAP 分子名称: 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL, BIR3 inhibitor MAA-CHG-PRO-ZHW, E3 ubiquitin-protein ligase XIAP, ... 著者 Garza-Granados, A, McGuire, J, Baggio, C, Pellecchia, M, Pegan, S.D. 登録日 2023-03-09 公開日 2023-07-05 最終更新日 2023-07-12 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Characterization of a Potent and Orally Bioavailable Lys-Covalent Inhibitor of Apoptosis Protein (IAP) Antagonist. J.Med.Chem., 66, 2023
8G7C	local refinement of SARS-CoV-2 spike/Nb4 complex with 2 RBDs up and 3 Nb4 bound 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Nanosota-4, Spike glycoprotein 著者 Ye, G, Bu, F, Liu, B, Li, F. 登録日 2023-02-16 公開日 2024-02-21 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 local refinement of SARS-CoV-2 spike/Nb4 complex with 2 RBDs up and 3 Nb4 bound To Be Published
8G7B	SARS-CoV-2 spike/Nb3 complex with 1 RBD up and 2 Nb3 (local refinement) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Nanosota-3, Spike glycoprotein 著者 Ye, G, Bu, F, Liu, B, Li, F. 登録日 2023-02-16 公開日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 SARS-CoV-2 spike/Nb3 complex with 1 RBD up and 2 Nb3 To Be Published
8G7A	SARS-CoV-2 spike/Nb3 complex with 2 RBDs up and 3 Nb3 (local refinement) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Nanosota-3, Spike glycoprotein 著者 Ye, G, Bu, F, Liu, B, Li, F. 登録日 2023-02-16 公開日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 SARS-CoV-2 spike/Nb3 complex with 2 RBDs up and 3 Nb3 (local refinement) To Be Published
8G79	Local refinement of SARS-CoV-2 spike/nanobody mixture complex around RBD 分子名称: Nanosota-3, Nanosota-4, Spike glycoprotein 著者 Ye, G, Bu, F, Liu, B, Li, F. 登録日 2023-02-16 公開日 2024-02-21 実験手法 ELECTRON MICROSCOPY (6.1 Å) 主引用文献 Local refinement of SARS-CoV-2 spike/nanobody mixture complex around RBD To Be Published
8G78	Local refinement of SARS-CoV-2 spike/nanobody mixture complex around NTD 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Nanosota-5, Nanosota-6, ... 著者 Ye, G, Bu, F, Liu, B, Li, F. 登録日 2023-02-16 公開日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Local refinement of SARS-CoV-2 spike/nanobody mixture complex around NTD To Be Published
8G77	SARS-CoV-2 spike/Nb6 complex 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Nanosota-6, ... 著者 Ye, G, Bu, F, Liu, B, Li, F. 登録日 2023-02-16 公開日 2024-02-21 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 SARS-CoV-2 spike/Nb6 complex To Be Published
8G76	SARS-CoV-2 spike/Nb5 complex 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Nanosota-5, ... 著者 Ye, G, Bu, F, Liu, B, Li, F. 登録日 2023-02-16 公開日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 SARS-CoV-2 spike/Nb5 complex To Be Published
8G75	SARS-CoV-2 spike/Nb4 complex with 2 RBDs up and 3 Nb4 bound 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Nanosota-4, ... 著者 Ye, G, Bu, F, Liu, B, Li, F. 登録日 2023-02-16 公開日 2024-01-24 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Discovery of Nanosota-2, -3, and -4 as super potent and broad-spectrum therapeutic nanobody candidates against COVID-19. J.Virol., 97, 2023
8G74	SARS-CoV-2 spike/Nb3 complex with 1 RBD up and 2 Nb3 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Nanosota-3, ... 著者 Ye, G, Bu, F, Liu, B, Li, F. 登録日 2023-02-16 公開日 2024-01-24 実験手法 ELECTRON MICROSCOPY (2.5 Å) 主引用文献 Discovery of Nanosota-2, -3, and -4 as super potent and broad-spectrum therapeutic nanobody candidates against COVID-19. J.Virol., 97, 2023
8G73	SARS-CoV-2 spike/Nb3 complex with 2 RBDs up and 3 Nb3 bound at 2.5 A 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Nanosota-3, ... 著者 Ye, G, Bu, F, Liu, B, Li, F. 登録日 2023-02-16 公開日 2024-01-24 実験手法 ELECTRON MICROSCOPY (2.5 Å) 主引用文献 Discovery of Nanosota-2, -3, and -4 as super potent and broad-spectrum therapeutic nanobody candidates against COVID-19. J.Virol., 97, 2023
8G72	SARS-CoV-2 spike/Nb2 complex with 1 RBD up (local refinement at 5.6 A) 分子名称: Nanosota-2, Spike glycoprotein 著者 Ye, G, Bu, F, Liu, B, Li, F. 登録日 2023-02-16 公開日 2024-01-24 実験手法 ELECTRON MICROSCOPY (5.6 Å) 主引用文献 Discovery of Nanosota-2, -3, and -4 as super potent and broad-spectrum therapeutic nanobody candidates against COVID-19. J.Virol., 97, 2023
8G71	Spike/Nb2 complex with 1 RBD up 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein 著者 Ye, G, Bu, F, Liu, B, Li, F. 登録日 2023-02-16 公開日 2024-02-21 実験手法 ELECTRON MICROSCOPY (2.1 Å) 主引用文献 SARS-CoV-2 spike/Nb2 complex with 1 RBD up To Be Published

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