PDB: 42250 件ウェブページステータス検索Chemie searchBIRD

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4QTB	Structure of human ERK1 in complex with SCH772984 revealing a novel inhibitor-induced binding pocket 分子名称: (3R)-1-(2-oxo-2-{4-[4-(pyrimidin-2-yl)phenyl]piperazin-1-yl}ethyl)-N-[3-(pyridin-4-yl)-2H-indazol-5-yl]pyrrolidine-3-carboxamide, 1,2-ETHANEDIOL, CHLORIDE ION, ... 著者 Chaikuad, A, Keates, T, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC) 登録日 2014-07-07 公開日 2014-07-23 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 A unique inhibitor binding site in ERK1/2 is associated with slow binding kinetics. Nat.Chem.Biol., 10, 2014
4R65	Ternary complex crystal structure of R258A mutant of DNA polymerase Beta 分子名称: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, CHLORIDE ION, DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ... 著者 Batra, V.K, Beard, W.A, Wilson, S.H. 登録日 2014-08-22 公開日 2014-10-08 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Substrate-induced DNA Polymerase beta Activation. J.Biol.Chem., 289, 2014
7TTL	Stable-5-LOX elongated Ha2 (4 copies ASU) 分子名称: Arachidonate 5-lipoxygenase, FE (II) ION 著者 Gilbert, N.C, Newcomer, M.E. 登録日 2022-02-01 公開日 2022-08-31 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.43 Å) 主引用文献 Helical remodeling augments 5-lipoxygenase activity in the synthesis of proinflammatory mediators. J.Biol.Chem., 298, 2022
8W7M	Yeast replisome in state V 分子名称: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 45, DNA (71-mer), ... 著者 Dang, S, Zhai, Y, Feng, J, Yu, D, Xu, Z. 登録日 2023-08-30 公開日 2023-12-06 実験手法 ELECTRON MICROSCOPY (4.12 Å) 主引用文献 Synergism between CMG helicase and leading strand DNA polymerase at replication fork. Nat Commun, 14, 2023
6V8G	GltPh mutant - Y204L A345V V366A 分子名称: ASPARTIC ACID, Glutamate transporter homolog, SODIUM ION 著者 Boudker, O, Huysmans, G.H.M. 登録日 2019-12-11 公開日 2020-11-18 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.38 Å) 主引用文献 The high-energy transition state of the glutamate transporter homologue GltPh. Embo J., 40, 2021
8TJ5	Inner spoke ring of the yeast NPC 分子名称: Nucleoporin 59, Nucleoporin NIC96, Nucleoporin NSP1, ... 著者 Akey, C.W, Echeverria, I, Ouch, C, Fernandez-Martinez, J, Rout, M.P. 登録日 2023-07-20 公開日 2023-10-11 実験手法 ELECTRON MICROSCOPY (6.6 Å) 主引用文献 Implications of a multiscale structure of the yeast nuclear pore complex. Mol.Cell, 83, 2023
4Z6D	Structure of human DNA polymerase beta 279NA mutant complexed with G in the template base paired with incoming non-hydrolyzable TTP 分子名称: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*CP*CP*GP*AP*CP*GP*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ... 著者 Koag, M.-C, Lee, S. 登録日 2015-04-04 公開日 2016-04-13 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.51 Å) 主引用文献 Insights into the effect of minor groove interactions and metal cofactors on mutagenic replication by human DNA polymerase beta. Biochem. J., 475, 2018
8W7S	Yeast replisome in state IV 分子名称: Cell division control protein 45, DNA (71-mer), DNA polymerase alpha-binding protein, ... 著者 Dang, S, Zhai, Y, Feng, J, Yu, D. 登録日 2023-08-31 公開日 2023-12-20 実験手法 ELECTRON MICROSCOPY (7.39 Å) 主引用文献 Synergism between CMG helicase and leading strand DNA polymerase at replication fork. Nat Commun, 14, 2023
6V7T	Crystal structure of CTX-M-14 E166A/D240G beta-lactamase in complex with ceftazidime 分子名称: ACYLATED CEFTAZIDIME, Beta-lactamase 著者 Brown, C.A, Hu, L, Sankaran, B, Prasad, B.V.V, Palzkill, T.G. 登録日 2019-12-09 公開日 2020-04-22 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (1.34 Å) 主引用文献 Antagonism between substitutions in beta-lactamase explains a path not taken in the evolution of bacterial drug resistance. J.Biol.Chem., 295, 2020
6VDY	Crystal Structure of Dehaloperoxidase B wild type in Complex with Substrate Trichlorophenol 分子名称: 1,2-ETHANEDIOL, 2,4,6-trichlorophenol, Dehaloperoxidase B, ... 著者 Ghiladi, R.A, de Serrano, V.S, McGuire, A, Malewschik, T. 登録日 2019-12-27 公開日 2020-12-30 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Nonnative Heme Incorporation into Multifunctional Globin Increases Peroxygenase Activity an Order and Magnitude Compared to Native Enzyme To Be Published
6BOU	Human APE1 substrate complex with an T/C mismatch adjacent the THF 分子名称: 21-mer DNA, DNA-(apurinic or apyrimidinic site) lyase 著者 Freudenthal, B.D, Whitaker, A.M, Fairlamb, M.S. 登録日 2017-11-20 公開日 2018-08-15 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.538 Å) 主引用文献 Apurinic/apyrimidinic (AP) endonuclease 1 processing of AP sites with 5' mismatches. Acta Crystallogr D Struct Biol, 74, 2018
6VAG	Crystal structure of the oligomerization domain of phosphoprotein from parainfluenza virus 5 分子名称: GLYCEROL, Phosphoprotein 著者 Aggarwal, M, Abdella, R, He, Y, Lamb, R.A. 登録日 2019-12-17 公開日 2020-02-19 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Structure of a paramyxovirus polymerase complex reveals a unique methyltransferase-CTD conformation. Proc.Natl.Acad.Sci.USA, 117, 2020
4RIU	A Carbonic Anhydrase IX Mimic in Complex with a Saccharin-Based Inhibitor 分子名称: Carbonic anhydrase 2, GLYCEROL, ZINC ION, ... 著者 Mahon, B.P, McKenna, R. 登録日 2014-10-07 公開日 2015-02-04 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.651 Å) 主引用文献 Saccharin: A lead compound for structure-based drug design of carbonic anhydrase IX inhibitors. Bioorg.Med.Chem., 23, 2015
7T92	Structure of the peroxisomal retro-translocon formed by a heterotrimeric ubiquitin ligase complex 分子名称: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, CHOLESTEROL, Fab heavy chain, ... 著者 Peiqiang, F, Tom, R. 登録日 2021-12-17 公開日 2022-07-06 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 A peroxisomal ubiquitin ligase complex forms a retrotranslocation channel. Nature, 607, 2022
4RIV	A Carbonic Anhydrase IX Mimic in Complex with Saccharin 分子名称: 1,2-BENZISOTHIAZOL-3(2H)-ONE 1,1-DIOXIDE, Carbonic anhydrase 2, GLYCEROL, ... 著者 Mahon, B.P, McKenna, R. 登録日 2014-10-07 公開日 2015-02-04 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.631 Å) 主引用文献 Saccharin: A lead compound for structure-based drug design of carbonic anhydrase IX inhibitors. Bioorg.Med.Chem., 23, 2015
4RIQ	Crystal structure of DPY-30 dimerization/docking domain in complex with Ash2L Sdc1-DPY-30 Interacting region (SDI) 分子名称: Protein dpy-30 homolog, SULFATE ION, Set1/Ash2 histone methyltransferase complex subunit ASH2 著者 Tremblay, V, Couture, J.-F. 登録日 2014-10-07 公開日 2014-12-17 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.231 Å) 主引用文献 Molecular Basis for DPY-30 Association to COMPASS-like and NURF Complexes. Structure, 22, 2014
4YYT	Human Carbonic Anhydrase II complexed with an inhibitor with a benzenesulfonamide group (5). 分子名称: 4-(2-hydroxyethyl)benzenesulfonamide, Carbonic anhydrase 2, GLYCEROL, ... 著者 Rechlin, C, Heine, A, Klebe, G. 登録日 2015-03-24 公開日 2016-02-03 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.07 Å) 主引用文献 Kinetic and Structural Insights into the Mechanism of Binding of Sulfonamides to Human Carbonic Anhydrase by Computational and Experimental Studies. J.Med.Chem., 59, 2016
4RQ0	Human DNA Polymerase Beta With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine (8-oxoG)and dCTP soaked with MgCl2 for 80 s 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, ACETATE ION, CHLORIDE ION, ... 著者 Vyas, R, Suo, Z. 登録日 2014-10-31 公開日 2015-04-15 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Viewing Human DNA Polymerase beta Faithfully and Unfaithfully Bypass an Oxidative Lesion by Time-Dependent Crystallography. J.Am.Chem.Soc., 137, 2015
6BNT	Crystal structure of AP2 mu1 adaptin C-terminal domain with IRS-1 peptide 分子名称: AP-2 complex subunit mu, Insulin receptor substrate 1 著者 Kikuchi, S, Choi, E, Yu, H. 登録日 2017-11-17 公開日 2018-11-21 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Mitotic regulators and the SHP2-MAPK pathway promote IR endocytosis and feedback regulation of insulin signaling. Nat Commun, 10, 2019
6BOS	Human APE1 substrate complex with an A/C mismatch adjacent the THF 分子名称: 21-mer DNA, DNA-(apurinic or apyrimidinic site) lyase 著者 Freudenthal, B.D, Whitaker, A.M, Fairlamb, M.S. 登録日 2017-11-20 公開日 2018-08-15 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.304 Å) 主引用文献 Apurinic/apyrimidinic (AP) endonuclease 1 processing of AP sites with 5' mismatches. Acta Crystallogr D Struct Biol, 74, 2018
6VHY	NpsA-ThdA, an artificially fused Adenylation-PCP di-domain NRPS from Klebsiella oxytoca 分子名称: 5'-deoxy-5'-({[(2R)-2-{[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl]sulfanyl}-2-(3-hydroxyphenyl)ethyl]sulfonyl}amino)adenosine, NpsA Adenylation Domain, Non-ribosomal peptide synthetase fusion protein 著者 Kreitler, D.F, Gulick, A.M. 登録日 2020-01-10 公開日 2020-06-24 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Biosynthesis, Mechanism of Action, and Inhibition of the Enterotoxin Tilimycin Produced by the Opportunistic PathogenKlebsiella oxytoca. Acs Infect Dis., 6, 2020
6VFF	Dimer of Human Adenosine Deaminase Acting on dsRNA (ADAR2) mutant E488Q bound to dsRNA sequence derived from human GLI1 gene 分子名称: Double-stranded RNA-specific editase 1, INOSITOL HEXAKISPHOSPHATE, RNA (5-R(*GP*CP*UP*CP*GP*CP*GP*AP*UP*GP*CP*UP*(8AZ)P*GP*AP*GP*GP*GP*CP* UP*CP*UP*GP*AP*UP*AP*GP*CP*UP*AP*CP*G)-3), ... 著者 Thuy-boun, A.S, Fisher, A.J, Beal, P.A. 登録日 2020-01-03 公開日 2020-07-01 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Asymmetric dimerization of adenosine deaminase acting on RNA facilitates substrate recognition. Nucleic Acids Res., 48, 2020
6VFZ	Crystal Structure of Human Mitochondrial Isocitrate Dehydrogenase (IDH2) R140Q Mutant Homodimer in Complex with NADPH and AG-881 (Vorasidenib) Inhibitor. 分子名称: 6-(6-chloropyridin-2-yl)-N2,N4-bis[(2R)-1,1,1-trifluoropropan-2-yl]-1,3,5-triazine-2,4-diamine, CALCIUM ION, Isocitrate dehydrogenase [NADP], ... 著者 Padyana, A, Jin, L. 登録日 2020-01-07 公開日 2020-02-05 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.99 Å) 主引用文献 Vorasidenib (AG-881): A First-in-Class, Brain-Penetrant Dual Inhibitor of Mutant IDH1 and 2 for Treatment of Glioma. Acs Med.Chem.Lett., 11, 2020
7REI	The crystal structure of nickel bound human ADO C18S C239S variant 分子名称: 2-aminoethanethiol dioxygenase, GLYCEROL, NICKEL (II) ION 著者 Wang, Y, Shin, I, Li, J, Liu, A. 登録日 2021-07-12 公開日 2021-09-15 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 Crystal structure of human cysteamine dioxygenase provides a structural rationale for its function as an oxygen sensor. J.Biol.Chem., 297, 2021
4ZAO	Genetically engineered Carbonic anhydrase IX 分子名称: Carbonic anhydrase 2, ZINC ION 著者 Pinard, M.A, Aggarwal, M. 登録日 2015-04-13 公開日 2015-10-14 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 A sucrose-binding site provides a lead towards an isoform-specific inhibitor of the cancer-associated enzyme carbonic anhydrase IX. Acta Crystallogr F Struct Biol Commun, 71, 2015

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