PDB: 1682 件ウェブページステータス検索Chemie searchBIRD

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1AH8	STRUCTURE OF THE ORTHORHOMBIC FORM OF THE N-TERMINAL DOMAIN OF THE YEAST HSP90 CHAPERONE 分子名称: GLYCEROL, HEAT SHOCK PROTEIN 90 著者 Prodromou, C, Roe, S.M, Pearl, L.H. 登録日 1997-04-14 公開日 1997-10-22 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 A molecular clamp in the crystal structure of the N-terminal domain of the yeast Hsp90 chaperone. Nat.Struct.Biol., 4, 1997
8OMO	DNA-unbound MutSbeta-ATP complex (bent clamp form) 分子名称: ADENOSINE-5'-TRIPHOSPHATE, DNA mismatch repair protein Msh2, DNA mismatch repair protein Msh3, ... 著者 Lee, J.-H, Thomsen, M, Daub, H, Steinbacher, S, Sztyler, A, Thieulin-Pardo, G, Neudegger, T, Plotnikov, N, Iyer, R.R, Wilkinson, H, Monteagudo, E, Felsenfeld, D.P, Haque, T, Finley, M, Dominguez, C, Vogt, T.F, Prasad, B.C. 登録日 2023-03-31 公開日 2023-05-24 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.43 Å) 主引用文献 DNA-unbound MutSbeta-ATP complex (bent clamp form) To Be Published
8OMQ	DNA-unbound MutSbeta-ATP complex (straight clamp form) 分子名称: ADENOSINE-5'-TRIPHOSPHATE, DNA mismatch repair protein Msh2, DNA mismatch repair protein Msh3, ... 著者 Lee, J.-H, Thomsen, M, Daub, H, Steinbacher, S, Sztyler, A, Thieulin-Pardo, G, Neudegger, T, Plotnikov, N, Iyer, R.R, Wilkinson, H, Monteagudo, E, Felsenfeld, D.P, Haque, T, Finley, M, Dominguez, C, Vogt, T.F, Prasad, B.C. 登録日 2023-03-31 公開日 2023-05-24 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.11 Å) 主引用文献 DNA-unbound MutSbeta-ATP complex (straight clamp form) To Be Published
9BE2	Structure of the E. coli nucleic associated protein, YejK 分子名称: Nucleoid-associated protein YejK 著者 Schumacher, M.A. 登録日 2024-04-13 公開日 2024-05-15 最終更新日 2024-07-24 実験手法 X-RAY DIFFRACTION (3.56 Å) 主引用文献 Structure of the E. coli nucleoid-associated protein YejK reveals a novel DNA binding clamp. Nucleic Acids Res., 52, 2024
7D7C	CryoEM structure of gp55-dependent RNA polymerase-promoter open complex 分子名称: DNA (nontemplate strand), DNA (template strand), DNA-directed RNA polymerase subunit alpha, ... 著者 Shi, J, Wen, A, Jin, S, Feng, Y. 登録日 2020-10-03 公開日 2021-01-20 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Transcription activation by a sliding clamp. Nat Commun, 12, 2021
7AB8	Crystal structure of a GDNF-GFRalpha1 complex 分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, ... 著者 Adams, S.E, Earl, C.P, Purkiss, A.G, McDonald, N.Q. 登録日 2020-09-07 公開日 2021-01-13 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 A two-site flexible clamp mechanism for RET-GDNF-GFR alpha 1 assembly reveals both conformational adaptation and strict geometric spacing. Structure, 29, 2021
7AML	RET/GDNF/GFRa1 extracellular complex Cryo-EM structure 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, GDNF family receptor alpha, ... 著者 Adams, S.E, Earl, C.P, Purkiss, A.G, McDonald, N.Q. 登録日 2020-10-09 公開日 2021-01-13 最終更新日 2021-07-14 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 A two-site flexible clamp mechanism for RET-GDNF-GFR alpha 1 assembly reveals both conformational adaptation and strict geometric spacing. Structure, 29, 2021
4J5F	Crystal Structure of B. thuringiensis AiiA mutant F107W 分子名称: GLYCEROL, N-acyl homoserine lactonase, ZINC ION 著者 Liu, C.F, Liu, D, Momb, J, Thomas, P.W, Lajoie, A, Petsko, G.A, Fast, W, Ringe, D. 登録日 2013-02-08 公開日 2013-06-26 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.72 Å) 主引用文献 A phenylalanine clamp controls substrate specificity in the quorum-quenching metallo-gamma-lactonase from Bacillus thuringiensis. Biochemistry, 52, 2013
4J5H	Crystal Structure of B. thuringiensis AiiA mutant F107W with N-decanoyl-L-homoserine bound at the active site 分子名称: GLYCEROL, N-acyl homoserine lactonase, N-decanoyl-L-homoserine, ... 著者 Liu, C.F, Liu, D, Momb, J, Thomas, P.W, Lajoie, A, Petsko, G.A, Fast, W, Ringe, D. 登録日 2013-02-08 公開日 2013-06-26 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 A phenylalanine clamp controls substrate specificity in the quorum-quenching metallo-gamma-lactonase from Bacillus thuringiensis. Biochemistry, 52, 2013
3TGM	X-Ray Crystal Structure of Human Heme Oxygenase-1 in Complex with 1-(1H-imidazol-1-yl)-4,4-diphenyl-2 butanone 分子名称: 1-(1H-imidazol-1-yl)-4,4-diphenylbutan-2-one, HEXANE-1,6-DIOL, Heme oxygenase 1, ... 著者 Rahman, M.N, Jia, Z. 登録日 2011-08-17 公開日 2012-02-01 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 A novel, "double-clamp" binding mode for human heme oxygenase-1 inhibition. Plos One, 7, 2012
6VAF	Structure of mono-ubiquitinated FANCD2 bound to non-ubiquitinated FANCI and to DNA 分子名称: DNA (29-MER), Fanconi anemia group D2 protein, Fanconi anemia, ... 著者 Pavletich, N.P. 登録日 2019-12-17 公開日 2020-03-18 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 DNA clamp function of the monoubiquitinated Fanconi anaemia ID complex. Nature, 580, 2020
6VAE	Mono-ubiquitinated Fanconi Anemia ID complex bound to ICL DNA 分子名称: DNA (29-MER), Fanconi anemia group D2 protein, Fanconi anemia, ... 著者 Pavletich, N.P. 登録日 2019-12-17 公開日 2020-03-18 最終更新日 2020-04-22 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 DNA clamp function of the monoubiquitinated Fanconi anaemia ID complex. Nature, 580, 2020
4I3H	A three-gate structure of topoisomerase IV from Streptococcus pneumoniae 分子名称: DNA (5'-D(*CP*AP*AP*AP*GP*GP*CP*GP*GP*TP*AP*AP*TP*AP*CP*GP*GP*TP*TP*AP*TP*CP*CP*AP*CP*AP*GP*AP*AP*TP*CP*AP*GP*G)-3'), DNA (5'-D(*CP*CP*TP*GP*AP*TP*TP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*CP*GP*TP*AP*TP*TP*AP*CP*CP*GP*CP*CP*TP*TP*TP*G)-3'), MAGNESIUM ION, ... 著者 Laponogov, I, Veselkov, D.A, Pan, X.-S, Crevel, I, Fisher, L.M, Sanderson, M.R. 登録日 2012-11-26 公開日 2013-08-28 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.7 Å) 主引用文献 Structure of an 'open' clamp type II topoisomerase-DNA complex provides a mechanism for DNA capture and transport. Nucleic Acids Res., 41, 2013
6CIX	Lactam cyclised mimetic of a fragment of p21 分子名称: p21 著者 Wegener, K.L. 登録日 2018-02-25 公開日 2018-07-04 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Rational Design of a 310-Helical PIP-Box Mimetic Targeting PCNA, the Human Sliding Clamp. Chemistry, 24, 2018
6CEJ	Solution structure of a 14mer fragment of the p21 protein 分子名称: Cyclin-dependent kinase inhibitor 1 著者 Wegener, K.L. 登録日 2018-02-12 公開日 2018-07-04 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Rational Design of a 310-Helical PIP-Box Mimetic Targeting PCNA, the Human Sliding Clamp. Chemistry, 24, 2018
6CIV	Lactam cyclised mimetic of a fragment of p21 分子名称: p21 著者 Wegener, K.L. 登録日 2018-02-25 公開日 2018-07-04 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Rational Design of a 310-Helical PIP-Box Mimetic Targeting PCNA, the Human Sliding Clamp. Chemistry, 24, 2018
4JUO	A low-resolution three-gate structure of topoisomerase IV from Streptococcus pneumoniae in space group H32 分子名称: (3S)-9-fluoro-3-methyl-10-(4-methylpiperazin-1-yl)-7-oxo-2,3-dihydro-7H-[1,4]oxazino[2,3,4-ij]quinoline-6-carboxylic acid, DNA topoisomerase 4 subunit A, DNA topoisomerase 4 subunit B, ... 著者 Laponogov, I, Veselkov, D.A, Pan, X.-S, Crevel, I, Fisher, L.M, Sanderson, M.R. 登録日 2013-03-25 公開日 2013-08-28 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (6.53 Å) 主引用文献 Structure of an 'open' clamp type II topoisomerase-DNA complex provides a mechanism for DNA capture and transport. Nucleic Acids Res., 41, 2013
5I3H	Structure-Function Studies on Role of Hydrophobic Clamping of a Basic Glutamate in Catalysis by Triosephosphate Isomerase 分子名称: 2-PHOSPHOGLYCOLIC ACID, POTASSIUM ION, Triosephosphate isomerase, ... 著者 Drake, E.J, Gulick, A.M, Richard, J.P, Zhai, X, Kim, K, Reinhardt, C.J. 登録日 2016-02-10 公開日 2016-05-18 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Structure-Function Studies of Hydrophobic Residues That Clamp a Basic Glutamate Side Chain during Catalysis by Triosephosphate Isomerase. Biochemistry, 55, 2016
5I3F	Structure-Function Studies on Role of Hydrophobic Clamping of a Basic Glutamate in Catalysis by Triosephosphate Isomerase 分子名称: Triosephosphate isomerase, glycosomal 著者 Drake, E.J, Gulick, A.M, Richard, J.P, Zhai, X, Kim, K, Reinhardt, C.J. 登録日 2016-02-10 公開日 2016-05-18 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.72 Å) 主引用文献 Structure-Function Studies of Hydrophobic Residues That Clamp a Basic Glutamate Side Chain during Catalysis by Triosephosphate Isomerase. Biochemistry, 55, 2016
5I3J	Structure-Function Studies on Role of Hydrophobic Clamping of a Basic Glutamate in Catalysis by Triosephosphate Isomerase 分子名称: SODIUM ION, Triosephosphate isomerase, glycosomal 著者 Drake, E.J, Gulick, A.M, Richard, J.P, Zhai, X, Kim, K, Reinhardt, C.J. 登録日 2016-02-10 公開日 2016-05-18 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structure-Function Studies of Hydrophobic Residues That Clamp a Basic Glutamate Side Chain during Catalysis by Triosephosphate Isomerase. Biochemistry, 55, 2016
5I3I	Structure-Function Studies on Role of Hydrophobic Clamping of a Basic Glutamate in Catalysis by Triosephosphate Isomerase 分子名称: 2-PHOSPHOGLYCOLIC ACID, Triosephosphate isomerase, glycosomal 著者 Drake, E.J, Gulick, A.M, Richard, J.P, Zhai, X, Kim, K, Reinhardt, C.J. 登録日 2016-02-10 公開日 2016-05-18 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure-Function Studies of Hydrophobic Residues That Clamp a Basic Glutamate Side Chain during Catalysis by Triosephosphate Isomerase. Biochemistry, 55, 2016
5I3K	Structure-Function Studies on Role of Hydrophobic Clamping of a Basic Glutamate in Catalysis by Triosephosphate Isomerase 分子名称: 2-PHOSPHOGLYCOLIC ACID, SODIUM ION, Triosephosphate isomerase, ... 著者 Drake, E.J, Gulick, A.M, Richard, J.P, Zhai, X, Kim, K, Reinhardt, C.J. 登録日 2016-02-10 公開日 2016-05-18 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.209 Å) 主引用文献 Structure-Function Studies of Hydrophobic Residues That Clamp a Basic Glutamate Side Chain during Catalysis by Triosephosphate Isomerase. Biochemistry, 55, 2016
5I3G	Structure-Function Studies on Role of Hydrophobic Clamping of a Basic Glutamate in Catalysis by Triosephosphate Isomerase 分子名称: Triosephosphate isomerase, glycosomal 著者 Drake, E.J, Gulick, A.M, Richard, J.P, Zhai, X, Kim, K, Reinhardt, C.J. 登録日 2016-02-10 公開日 2016-05-18 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 Structure-Function Studies of Hydrophobic Residues That Clamp a Basic Glutamate Side Chain during Catalysis by Triosephosphate Isomerase. Biochemistry, 55, 2016
3N9K	F229A/E292S Double Mutant of Exo-beta-1,3-glucanase from Candida albicans in Complex with Laminaritriose at 1.7 A 分子名称: CALCIUM ION, Glucan 1,3-beta-glucosidase, beta-D-glucopyranose-(1-3)-beta-D-glucopyranose, ... 著者 Nakatani, Y, Cutfield, S.M, Cutfield, J.F. 登録日 2010-05-30 公開日 2010-09-15 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Carbohydrate binding sites in Candida albicans exo-beta-1,3-glucanase and the role of the Phe-Phe 'clamp' at the active site entrance Febs J., 277, 2010
3P2X	Insulin fibrillation is the Janus face of induced fit. A chiaral clamp stabilizes the native state at the expense of activity 分子名称: CHLORIDE ION, Insulin, PHENOL, ... 著者 Hua, Q.X, Wan, Z.L, Huang, K, Hu, S.Q, Phillip, N.F, Jia, W.H, Whittingham, J, Dodson, G.G, Katsoyannis, P.G, Weiss, M.A. 登録日 2010-10-04 公開日 2011-11-23 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Insulin fibrillation is the Janus face of induced fit. A chiral clamp stabilizes the native state at the expense of activity To be Published

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