Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5MMM
DownloadVisualize
BU of 5mmm by Molmil
Structure of the 70S chloroplast ribosome
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein 2, ...
Authors:Bieri, P, Leibundgut, M, Saurer, M, Boehringer, D, Ban, N.
Deposit date:2016-12-11
Release date:2017-01-11
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:The complete structure of the chloroplast 70S ribosome in complex with translation factor pY.
EMBO J., 36, 2017
6M7A
DownloadVisualize
BU of 6m7a by Molmil
Structure of REV7-R124A complexed with SHLD3(28-73)
Descriptor: Mitotic spindle assembly checkpoint protein MAD2B, Shieldin complex subunit 3
Authors:Ma, Y.Z, Li, Y, Wu, B.X, Huang, H.D.
Deposit date:2020-03-18
Release date:2021-01-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of REV7-R124A complexed with SHLD3(28-73)
To Be Published
6M7B
DownloadVisualize
BU of 6m7b by Molmil
Structure of REV7-R124A complexed with SHLD3(37-73)
Descriptor: Mitotic spindle assembly checkpoint protein MAD2B, Shieldin complex subunit 3
Authors:Ma, Y.Z, Li, Y, Wu, B.X, Huang, H.D.
Deposit date:2020-03-18
Release date:2021-01-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structure of REV7-R124A complexed with SHLD3(37-73)
To Be Published
5AKA
DownloadVisualize
BU of 5aka by Molmil
EM structure of ribosome-SRP-FtsY complex in closed state
Descriptor: 23S ribosomal RNA, 4.5S ribosomal RNA, 50S RIBOSOMAL PROTEIN L11, ...
Authors:von Loeffelholz, O, Jiang, Q, Ariosa, A, Karuppasamy, M, Huard, K, Berger, I, Shan, S, Schaffitzel, C.
Deposit date:2015-03-03
Release date:2015-03-25
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (5.7 Å)
Cite:Ribosome-Srp-Ftsy Cotranslational Targeting Complex in the Closed State.
Proc.Natl.Acad.Sci.USA, 112, 2015
5MLC
DownloadVisualize
BU of 5mlc by Molmil
Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions
Descriptor: 23S ribosomal RNA, chloroplastic, 4.8S ribosomal RNA, ...
Authors:Graf, M, Arenz, S, Huter, P, Doenhoefer, A, Novacek, J, Wilson, D.N.
Deposit date:2016-12-06
Release date:2016-12-28
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions.
Nucleic Acids Res., 45, 2017
5ADY
DownloadVisualize
BU of 5ady by Molmil
Cryo-EM structures of the 50S ribosome subunit bound with HflX
Descriptor: 23S RRNA, 50S RIBOSOMAL PROTEIN L1, 50S RIBOSOMAL PROTEIN L10, ...
Authors:Zhang, Y, Mandava, C.S, Cao, W, Li, X, Zhang, D, Li, N, Zhang, Y, Zhang, X, Qin, Y, Mi, K, Lei, J, Sanyal, S, Gao, N.
Deposit date:2015-08-25
Release date:2015-10-14
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Hflx is a Ribosome Splitting Factor Rescuing Stalled Ribosomes Under Stress Conditions
Nat.Struct.Mol.Biol., 22, 2015
5MMI
DownloadVisualize
BU of 5mmi by Molmil
Structure of the large subunit of the chloroplast ribosome
Descriptor: 23S ribosomal RNA, 4.5S ribosomal RNA, 50S ribosomal protein 6, ...
Authors:Bieri, P, Leibundgut, M, Saurer, M, Boehringer, D, Ban, N.
Deposit date:2016-12-10
Release date:2017-01-11
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:The complete structure of the chloroplast 70S ribosome in complex with translation factor pY.
EMBO J., 36, 2017
5T9D
DownloadVisualize
BU of 5t9d by Molmil
Structure of PCNA acetylated on K20
Descriptor: Proliferating cell nuclear antigen
Authors:Couture, J.F, Tremblay, V, Brunzelle, J.S.
Deposit date:2016-09-09
Release date:2017-04-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.27 Å)
Cite:Structure of PCNA acetylated on K20
To Be Published
5SUX
DownloadVisualize
BU of 5sux by Molmil
Crystal Structure of ToxT from Vibrio Cholerae O395 bound to (E)-4-(8-methylnaphthalen-1-yl)but-3-enoic acid
Descriptor: (3E)-4-(8-methylnaphthalen-1-yl)but-3-enoic acid, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, AraC family transcriptional regulator
Authors:Kull, F.J, Kelley, A.R.
Deposit date:2016-08-04
Release date:2017-04-12
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of ToxT from Vibrio Cholerae O395 bound to (E)-4-(8-methylnaphthalen-1-yl)but-3-enoic acid
To Be Published
1HH2
DownloadVisualize
BU of 1hh2 by Molmil
Crystal structure of NusA from Thermotoga maritima
Descriptor: N UTILIZATION SUBSTANCE PROTEIN A
Authors:Worbs, M, Bourenkov, G.P, Bartunik, H.D, Huber, R, Wahl, M.C.
Deposit date:2000-12-18
Release date:2001-10-19
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:An Extended RNA Binding Surface Through Arrayed S1 and Kh Domains in Transcription Factor Nusa
Mol.Cell, 7, 2001
2BTO
DownloadVisualize
BU of 2bto by Molmil
Structure of BtubA from Prosthecobacter dejongeii
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, THIOREDOXIN 1, TUBULIN BTUBA
Authors:Schlieper, D, Lowe, J.
Deposit date:2005-06-04
Release date:2005-06-23
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of Bacterial Tubulin Btuba/B: Evidence for Horizontal Gene Transfer.
Proc.Natl.Acad.Sci.USA, 102, 2005
6SWI
DownloadVisualize
BU of 6swi by Molmil
The C-terminal domain of AraT, a response regulator from Geobacillus stearothermophilus
Descriptor: Two-component response regulator
Authors:Lansky, S, Lavid, N, Shoham, Y, Shoham, G.
Deposit date:2019-09-21
Release date:2020-10-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:The C-terminal domain of AraT, a response regulator from Geobacillus stearothermophilus
To Be Published
5A2Q
DownloadVisualize
BU of 5a2q by Molmil
Structure of the HCV IRES bound to the human ribosome
Descriptor: 18S RRNA, HCV IRES, MAGNESIUM ION, ...
Authors:Quade, N, Leiundgut, M, Boehringer, D, Heuvel, J.v.d, Ban, N.
Deposit date:2015-05-21
Release date:2015-07-15
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-Em Structure of Hepatitis C Virus Ires Bound to the Human Ribosome at 3.9 Angstrom Resolution
Nat.Commun., 6, 2015
8UV0
DownloadVisualize
BU of 8uv0 by Molmil
Discovery of (4-Pyrazolyl)-2-Aminopyrimidines as Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2
Descriptor: 1-{(4M)-4-[2-{[1-(cyclopropanesulfonyl)piperidin-4-yl]amino}-5-(trifluoromethyl)pyrimidin-4-yl]-1H-pyrazol-1-yl}-2-methylpropan-2-ol, Cyclin-dependent kinase 2
Authors:Deller, M.C, Epling, L.B.
Deposit date:2023-11-02
Release date:2024-02-14
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Discovery of (4-Pyrazolyl)-2-aminopyrimidines as Potent and Selective Inhibitors of Cyclin-Dependent Kinase 2.
J.Med.Chem., 67, 2024
2NZU
DownloadVisualize
BU of 2nzu by Molmil
Structural mechanism for the fine-tuning of CcpA function by the small molecule effectors G6P and FBP
Descriptor: 6-O-phosphono-beta-D-glucopyranose, Catabolite control protein, Phosphocarrier protein HPr, ...
Authors:Schumacher, M.A, Hillen, W, Brennan, R.G.
Deposit date:2006-11-25
Release date:2007-05-01
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Mechanism for the Fine-tuning of CcpA Function by The Small Molecule Effectors Glucose 6-Phosphate and Fructose 1,6-Bisphosphate.
J.Mol.Biol., 368, 2007
5N14
DownloadVisualize
BU of 5n14 by Molmil
NMR structure calculation of a composite Cys2His2 type zinc finger protein containing a non-peptide (or oligourea) helical domain
Descriptor: Protein (chimeric oligourea-peptide zinc finger), ZINC ION
Authors:Venkateshaiah M, V.K, Salgado, G.
Deposit date:2017-02-05
Release date:2017-04-12
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:NMR structure calculation of a composite Cys2His2 type zinc finger protein containing a non-peptide (or oligourea) helical domain.
To Be Published
4MTN
DownloadVisualize
BU of 4mtn by Molmil
Crystal structure of transcription termination factor NusA from Planctomyces limnophilus DSM 3776
Descriptor: SULFATE ION, Transcription termination factor NusA
Authors:Chang, C, Hatzos-Skintges, C, Clancy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2013-09-19
Release date:2013-10-02
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.579 Å)
Cite:Crystal structure of transcription termination factor NusA from Planctomyces limnophilus DSM 3776
TO BE PUBLISHED
7LQ4
DownloadVisualize
BU of 7lq4 by Molmil
Rr (RsiG)2-(c-di-GMP)2-WhiG complex
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), RsiG, WhiG
Authors:Schumacher, M.A, Brennan, R.G.
Deposit date:2021-02-12
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Evolution of a sigma-(c-di-GMP)-anti-sigma switch.
Proc.Natl.Acad.Sci.USA, 118, 2021
5AQC
DownloadVisualize
BU of 5aqc by Molmil
KstR, transcriptional repressor of cholesterol degradation in Mycobacterium tuberculosis, bound to the cholesterol coenzyme A derivative, (25R)-3-oxocholest-4-en-26-oyl-CoA.
Descriptor: (25S)-3-oxocholest-4-en-26-oyl-CoA, (4S)-2-METHYL-2,4-PENTANEDIOL, GLYCEROL, ...
Authors:Podust, L.M, Ouellet, H.
Deposit date:2015-09-21
Release date:2016-10-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Kstr, Transcriptional Repressor of Cholesterol Degradation in Mycobacterium Tuberculosis, Bound to the Cholesterol Coenzyme a Derivative, (25S)-3- Oxocholest-4-En-26-Oyl-Coa.
To be Published
2NZV
DownloadVisualize
BU of 2nzv by Molmil
Structural mechanism for the fine-tuning of CcpA function by the small molecule effectors G6P and FBP
Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, Catabolite control protein, Phosphocarrier protein HPr, ...
Authors:Schumacher, M.A, Hillen, W, Brennan, R.G.
Deposit date:2006-11-25
Release date:2007-05-01
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Mechanism for the Fine-tuning of CcpA Function by The Small Molecule Effectors Glucose 6-Phosphate and Fructose 1,6-Bisphosphate.
J.Mol.Biol., 368, 2007
4QTB
DownloadVisualize
BU of 4qtb by Molmil
Structure of human ERK1 in complex with SCH772984 revealing a novel inhibitor-induced binding pocket
Descriptor: (3R)-1-(2-oxo-2-{4-[4-(pyrimidin-2-yl)phenyl]piperazin-1-yl}ethyl)-N-[3-(pyridin-4-yl)-2H-indazol-5-yl]pyrrolidine-3-carboxamide, 1,2-ETHANEDIOL, CHLORIDE ION, ...
Authors:Chaikuad, A, Keates, T, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2014-07-07
Release date:2014-07-23
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:A unique inhibitor binding site in ERK1/2 is associated with slow binding kinetics.
Nat.Chem.Biol., 10, 2014
9C4B
DownloadVisualize
BU of 9c4b by Molmil
Second BAF53a of the human TIP60 complex
Descriptor: Actin-like protein 6A
Authors:Yang, Z, Mameri, A, Florez Ariza, A.J, Cote, J, Nogales, E.
Deposit date:2024-06-03
Release date:2024-08-14
Last modified:2024-09-11
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural insights into the human NuA4/TIP60 acetyltransferase and chromatin remodeling complex.
Science, 385, 2024
5EGS
DownloadVisualize
BU of 5egs by Molmil
Human PRMT6 with bound fragment-type inhibitor
Descriptor: 2-[4-(phenylmethyl)piperidin-1-yl]ethanamine, Protein arginine N-methyltransferase 6, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Steuber, H, Egner, U, Kania, J, Wu, H, Brown, P.J.
Deposit date:2015-10-27
Release date:2016-02-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Discovery of a Potent Class I Protein Arginine Methyltransferase Fragment Inhibitor.
J.Med.Chem., 59, 2016
6G53
DownloadVisualize
BU of 6g53 by Molmil
Cryo-EM structure of a late human pre-40S ribosomal subunit - State E
Descriptor: 18S ribosomal RNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ...
Authors:Ameismeier, M, Cheng, J, Berninghausen, O, Beckmann, R.
Deposit date:2018-03-28
Release date:2018-06-06
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Visualizing late states of human 40S ribosomal subunit maturation.
Nature, 558, 2018
2YKM
DownloadVisualize
BU of 2ykm by Molmil
Crystal structure of HIV-1 Reverse Transcriptase (RT) in complex with a Difluoromethylbenzoxazole (DFMB) Pyrimidine Thioether derivative, a non-nucleoside RT inhibitor (NNRTI)
Descriptor: 2-[DIFLUORO-[(4-METHYL-PYRIMIDINYL)-THIO]METHYL]-BENZOXAZOLE, CALCIUM ION, REVERSE TRANSCRIPTASE/RIBONUCLEASE H
Authors:Boyer, J, Arnoult, E, Medebielle, M, Guillemont, J, Unge, T, Unge, J, Jochmans, D.
Deposit date:2011-05-28
Release date:2011-08-17
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Difluoromethylbenzoxazole Pyrimidine Thioether Derivatives: A Novel Class of Potent Non-Nucleoside HIV-1 Reverse Transcriptase Inhibitors.
J.Med.Chem., 54, 2011

227344

PDB entries from 2024-11-13

PDB statisticsPDBj update infoContact PDBjnumon