PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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4A3D	RNA Polymerase II initial transcribing complex with a 6nt DNA-RNA hybrid Descriptor: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... Authors: Cheung, A.C.M, Sainsbury, S, Cramer, P. Deposit date: 2011-09-30 Release date: 2011-12-07 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Structural basis of initial RNA polymerase II transcription. EMBO J., 30, 2011
4A3C	RNA Polymerase II initial transcribing complex with a 5nt DNA-RNA hybrid Descriptor: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... Authors: Cheung, A.C.M, Sainsbury, S, Cramer, P. Deposit date: 2011-09-30 Release date: 2011-11-16 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Structural basis of initial RNA polymerase II transcription. EMBO J., 30, 2011
2KHY	Specifier Domain of B. subtilis tyrS T box leader RNA Descriptor: RNA (38-MER) Authors: Wang, J, Henkin, T.M. Deposit date: 2009-04-14 Release date: 2010-02-16 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: NMR structure and dynamics of the Specifier Loop domain from the Bacillus subtilis tyrS T box leader RNA. Nucleic Acids Res., 38, 2010
5E6M	Crystal structure of human wild type GlyRS bound with tRNAGly Descriptor: GLYCYL-ADENOSINE-5'-PHOSPHATE, Glycine--tRNA ligase, NICKEL (II) ION, ... Authors: Xie, W, Qin, X, Deng, X, Chen, L, Liu, Y. Deposit date: 2015-10-10 Release date: 2016-07-20 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.927 Å) Cite: Crystal Structure of the Wild-Type Human GlyRS Bound with tRNA(Gly) in a Productive Conformation J.Mol.Biol., 428, 2016
6MX6	The Prp8 intein of Cryptococcus neoformans Descriptor: Pre-mRNA-processing-splicing factor 8 Authors: Li, Z, Li, H. Deposit date: 2018-10-30 Release date: 2019-10-23 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.749 Å) Cite: Spliceosomal Prp8 intein at the crossroads of protein and RNA splicing. Plos Biol., 17, 2019
5OC6	Crystal structure of human tRNA-dihydrouridine(20) synthase dsRBD in complex with a 22 nucleotide dsRNA Descriptor: RNA, tRNA-dihydrouridine(20) synthase [NAD(P)+]-like Authors: Bou-nader, C, Pecqueur, L, Hamdane, D. Deposit date: 2017-06-29 Release date: 2018-12-26 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Molecular basis for transfer RNA recognition by the double-stranded RNA-binding domain of human dihydrouridine synthase 2. Nucleic Acids Res., 47, 2019
3BT7	Structure of E. coli 5-Methyluridine Methyltransferase TrmA in complex with 19 nucleotide T-arm analogue Descriptor: RNA (5'-D(P*GP*CP*UP*GP*UP*GP*(5MU)P*UP*CP*GP*AP*UP*CP*CP*AP*CP*AP*GP*C)-3'), tRNA (uracil-5-)-methyltransferase Authors: Alian, A, Stroud, R.M, Finer-Moore, J. Deposit date: 2007-12-27 Release date: 2008-04-29 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.43 Å) Cite: Structure of a TrmA-RNA complex: A consensus RNA fold contributes to substrate selectivity and catalysis in m5U methyltransferases. Proc.Natl.Acad.Sci.Usa, 105, 2008
4M2Z	Crystal structure of RNASE III complexed with double-stranded RNA and CMP (TYPE II CLEAVAGE) Descriptor: CYTIDINE-5'-MONOPHOSPHATE, MAGNESIUM ION, RNA10, ... Authors: Gan, J, Liang, Y.-H, Shaw, G.X, Tropea, J.E, Waugh, D.S, Ji, X. Deposit date: 2013-08-05 Release date: 2013-12-11 Last modified: 2024-07-03 Method: X-RAY DIFFRACTION (2.85 Å) Cite: RNase III: Genetics and Function; Structure and Mechanism. Annu. Rev. Genet., 47, 2013
4M30	Crystal structure of RNASE III complexed with double-stranded RNA AND AMP (TYPE II CLEAVAGE) Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, ... Authors: Gan, J, Liang, Y.-H, Shaw, G.X, Tropea, J.E, Waugh, D.S, Ji, X. Deposit date: 2013-08-05 Release date: 2013-12-11 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.501 Å) Cite: RNase III: Genetics and Function; Structure and Mechanism. Annu. Rev. Genet., 47, 2013
5XWP	Crystal structure of LbuCas13a-crRNA-target RNA ternary complex Descriptor: RNA (30-MER), RNA (59-MER), Uncharacterized protein Authors: Liu, L, Li, X, Li, Z, Wang, Y. Deposit date: 2017-06-30 Release date: 2017-09-13 Last modified: 2017-10-18 Method: X-RAY DIFFRACTION (3.086 Å) Cite: The Molecular Architecture for RNA-Guided RNA Cleavage by Cas13a. Cell, 170, 2017
6MUT	Cryo-EM structure of ternary Csm-crRNA-target RNA with anti-tag sequence complex in type III-A CRISPR-Cas system Descriptor: RNA (5'-R(*GP*UP*GP*GP*AP*AP*AP*GP*GP*CP*GP*GP*GP*CP*AP*GP*AP*GP*GP*C)-3'), RNA (5'-R(P*CP*CP*UP*CP*UP*GP*CP*CP*CP*GP*CP*CP*UP*UP*UP*CP*CP*AP*C)-3'), Uncharacterized protein Csm1, ... Authors: Jia, N, Wang, C, Eng, E.T, Patel, D.J. Deposit date: 2018-10-23 Release date: 2018-12-12 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Type III-A CRISPR-Cas Csm Complexes: Assembly, Periodic RNA Cleavage, DNase Activity Regulation, and Autoimmunity. Mol. Cell, 73, 2019
6MUS	Cryo-EM structure of larger Csm-crRNA-target RNA ternary complex in type III-A CRISPR-Cas system Descriptor: RNA (25-MER), RNA (33-MER), Uncharacterized protein Csm1, ... Authors: Jia, N, Wang, C, Eng, E.T. Deposit date: 2018-10-23 Release date: 2018-12-12 Last modified: 2019-01-30 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Type III-A CRISPR-Cas Csm Complexes: Assembly, Periodic RNA Cleavage, DNase Activity Regulation, and Autoimmunity. Mol. Cell, 73, 2019
6MUR	Cryo-EM structure of Csm-crRNA-target RNA ternary complex in type III-A CRISPR-Cas system Descriptor: RNA (27-MER), RNA (5'-R(P*GP*CP*AP*AP*AP*CP*CP*GP*CP*CP*UP*CP*UP*GP*CP*CP*CP*GP*C)-3'), Uncharacterized protein, ... Authors: Jia, N, Wang, C, Eng, E.T, Patel, D.J. Deposit date: 2018-10-23 Release date: 2018-12-12 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Type III-A CRISPR-Cas Csm Complexes: Assembly, Periodic RNA Cleavage, DNase Activity Regulation, and Autoimmunity. Mol. Cell, 73, 2019
6MUU	Cryo-EM structure of Csm-crRNA binary complex in type III-A CRISPR-Cas system Descriptor: RNA (25-MER), Uncharacterized protein Csm1, Uncharacterized protein Csm2, ... Authors: Jia, N, Wang, C, Eng, E.T, Patel, D.J. Deposit date: 2018-10-23 Release date: 2018-12-19 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3 Å) Cite: Type III-A CRISPR-Cas Csm Complexes: Assembly, Periodic RNA Cleavage, DNase Activity Regulation, and Autoimmunity. Mol. Cell, 73, 2019
8WCS	Cryo-EM structure of Cas13h1-crRNA binary complex Descriptor: 66-nt crRNA, Cas13h1, MAGNESIUM ION Authors: Zhang, C. Deposit date: 2023-09-13 Release date: 2024-05-22 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Molecular mechanism for target RNA recognition and cleavage of Cas13h. Nucleic Acids Res., 2024
8WCE	Cryo-EM structure of a protein-RNA complex Descriptor: MAGNESIUM ION, RNA (31-MER), RNA (66-MER), ... Authors: Li, Z. Deposit date: 2023-09-11 Release date: 2024-05-22 Method: ELECTRON MICROSCOPY (3.09 Å) Cite: Molecular mechanism for target RNA recognition and cleavage of Cas13h. Nucleic Acids Res., 2024
6N8I	RNA Duplex containing the internal loop 5'-UUCG/3'-GCUU Descriptor: RNA (5'-R(*CP*GP*CP*AP*UP*UP*CP*GP*AP*CP*GP*C)-3'), RNA (5'-R(*GP*CP*GP*UP*UP*UP*CP*GP*UP*GP*CP*G)-3') Authors: Berger, K.D, Kennedy, S.D, Turner, D.H. Deposit date: 2018-11-29 Release date: 2019-02-13 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures. Biochemistry, 58, 2019
2BGG	The structure of a Piwi protein from Archaeoglobus fulgidus complexed with a 16nt siRNA duplex. Descriptor: 5'-R(*GP*UP*CP*GP*AP*AP*UP*UP)-3', 5'-R(*UP*UP*CP*GP*AP*CP*GP*CP)-3', MANGANESE (II) ION, ... Authors: Parker, J.S, Roe, S.M, Barford, D. Deposit date: 2004-12-22 Release date: 2005-03-31 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural Insights Into Mrna Recognition from a Piwi Domain-Sirna Guide Complex Nature, 434, 2005
6N8F	RNA Duplex containing the internal loop 5'-GCUU/3'-UUCG Descriptor: RNA (5'-R(*CP*GP*CP*AP*GP*CP*UP*UP*AP*CP*GP*C)-3'), RNA (5'-R(*GP*CP*GP*UP*GP*CP*UP*UP*UP*GP*CP*G)-3') Authors: Berger, K.D, Kennedy, S.D, Turner, D.H. Deposit date: 2018-11-29 Release date: 2019-02-13 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures. Biochemistry, 58, 2019
4PNO	Escherichia coli Hfq-RNA complex at 0.97 A Resolution Descriptor: RNA-binding protein Hfq, URIDINE-5'-MONOPHOSPHATE Authors: Schulz, E.C, Barabas, O. Deposit date: 2014-05-24 Release date: 2014-11-19 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (0.97 Å) Cite: Structure of an Escherichia coli Hfq:RNA complex at 0.97 angstrom resolution. Acta Crystallogr.,Sect.F, 70, 2014
6N8H	RNA Duplex containing the internal loop 5'-GCAU/3'-UACG Descriptor: RNA (5'-R(*CP*GP*GP*GP*CP*AP*UP*CP*CP*G)-3') Authors: Berger, K.D, Kennedy, S.D, Turner, D.H. Deposit date: 2018-11-29 Release date: 2019-02-13 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures. Biochemistry, 58, 2019
2LBL	Unmodified Glycyl-tRNA(UCC) anticodon stem-loop from Bacillus subtilis Descriptor: RNA (5'-R(*GP*GP*GP*AP*CP*CP*UP*UP*CP*CP*AP*AP*GP*UP*CP*UP*C)-3') Authors: Chang, A.T, Nikonowicz, E.P. Deposit date: 2011-03-31 Release date: 2012-04-04 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution Nuclear Magnetic Resonance Analyses of the Anticodon Arms of Proteinogenic and Nonproteinogenic tRNA(Gly). Biochemistry, 51, 2012
5AMQ	Structure of the La Crosse Bunyavirus polymerase in complex with the 3' and 5' viral RNA Descriptor: RNA, RNA POLYMERASE L Authors: Reguera, J, Gerlach, P, Cusack, S. Deposit date: 2015-03-12 Release date: 2015-06-03 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural Insights Into Bunyavirus Replication and its Regulation by the Vrna Promoter. Cell, 161, 2015
5AMR	Structure of the La Crosse Bunyavirus polymerase in complex with the 3' viral RNA Descriptor: RNA, RNA POLYMERASE L Authors: Reguera, J, Gerlach, P, Cusack, S. Deposit date: 2015-03-12 Release date: 2015-06-03 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.57 Å) Cite: Structural Insights Into Bunyavirus Replication and its Regulation by the Vrna Promoter. Cell(Cambridge,Mass.), 161, 2015
3G9Y	Crystal structure of the second zinc finger from ZRANB2/ZNF265 bound to 6 nt ssRNA sequence AGGUAA Descriptor: RNA (5'-R(*AP*GP*GP*UP*AP*A)-3'), ZINC ION, Zinc finger Ran-binding domain-containing protein 2 Authors: Loughlin, F.E, McGrath, A.P, Lee, M, Guss, J.M, Mackay, J.P. Deposit date: 2009-02-15 Release date: 2009-03-03 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.4 Å) Cite: The zinc fingers of the SR-like protein ZRANB2 are single-stranded RNA-binding domains that recognize 5' splice site-like sequences Proc.Natl.Acad.Sci.USA, 106, 2009

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