PDB: 224004 resultsInfo pagesStatus searchChemie searchBIRD

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2HMV	Diamond-shaped octameric ring structure of an RCK domain with ADP bound Descriptor: ADENOSINE-5'-DIPHOSPHATE, YuaA protein Authors: Albright, R.A, Morais-Cabral, J.H. Deposit date: 2006-07-11 Release date: 2006-09-26 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.2 Å) Cite: The RCK Domain of the KtrAB K(+) Transporter: Multiple Conformations of an Octameric Ring. Cell(Cambridge,Mass.), 126, 2006
2HMU	Diamond-shaped octameric ring structure of an RCK domain with ATP bound Descriptor: ADENOSINE-5'-TRIPHOSPHATE, YuaA protein Authors: Albright, R.A, Morais-Cabral, J.H. Deposit date: 2006-07-11 Release date: 2006-09-26 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.25 Å) Cite: The RCK Domain of the KtrAB K(+) Transporter: Multiple Conformations of an Octameric Ring. Cell(Cambridge,Mass.), 126, 2006
2DY4	Crystal structure of RB69 GP43 in complex with DNA containing Thymine Glycol Descriptor: 5'-D(*CP*GP*(CTG)P*GP*GP*AP*AP*TP*GP*A*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*T*CP*AP*TP*TP*CP*CP*A)-3', DNA polymerase Authors: Aller, P, Rould, M.A, Hogg, M, Wallace, S.S, Doublie, S. Deposit date: 2006-09-06 Release date: 2007-01-09 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.65 Å) Cite: A structural rationale for stalling of a replicative DNA polymerase at the most common oxidative thymine lesion, thymine glycol. Proc.Natl.Acad.Sci.USA, 104, 2007
2HKP	SUMO protease Ulp1 with the catalytic cysteine oxidized to a sulfenic acid Descriptor: Ubiquitin-like-specific protease 1 Authors: Xu, Z, Ng, T.B, Au, S.W.N. Deposit date: 2006-07-05 Release date: 2007-07-31 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Molecular basis of the redox regulation of SUMO proteases: a protective mechanism of intermolecular disulfide linkage against irreversible sulfhydryl oxidation Faseb J., 22, 2008
2HPG	The crystal structure of a thermophilic TRAP periplasmic binding protein Descriptor: ABC transporter, periplasmic substrate-binding protein Authors: Cuneo, M.J, Hellinga, H.W. Deposit date: 2006-07-17 Release date: 2007-03-20 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural analysis of a periplasmic binding protein in the tripartite ATP-independent transporter family reveals a tetrameric assembly that may have a role in ligand transport. J.Biol.Chem., 283, 2008
2F2H	Structure of the YicI thiosugar Michaelis complex Descriptor: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, 4-NITROPHENYL 6-THIO-6-S-ALPHA-D-XYLOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE, GLYCEROL, ... Authors: Kim, Y.-W, Lovering, A.L, Strynadka, N.C.J, Withers, S.G. Deposit date: 2005-11-16 Release date: 2006-02-28 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Expanding the Thioglycoligase Strategy to the Synthesis of alpha-linked Thioglycosides Allows Structural Investigation of the Parent Enzyme/Substrate Complex J.Am.Chem.Soc., 128, 2006
2FKF	Phosphomannomutase/Phosphoglucomutase from Pseudomonas aeruginosa with alpha-D-glucose 1,6-bisphosphate bound Descriptor: 1,6-di-O-phosphono-alpha-D-glucopyranose, Phosphomannomutase/phosphoglucomutase, ZINC ION Authors: Regni, C.A, Beamer, L.J. Deposit date: 2006-01-04 Release date: 2006-04-04 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2 Å) Cite: The reaction of phosphohexomutase from Pseudomonas aeruginosa: structural insights into a simple processive enzyme. J.Biol.Chem., 281, 2006
2F78	BenM effector binding domain with its effector benzoate Descriptor: BENZOIC ACID, HTH-type transcriptional regulator benM Authors: Clark, T, Haddad, S, Ezezika, O, Neidle, E, Momany, C. Deposit date: 2005-11-30 Release date: 2006-10-31 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Distinct Effector-binding Sites Enable Synergistic Transcriptional Activation by BenM, a LysR-type Regulator. J.Mol.Biol., 367, 2007
2EUX	Structure of a Ndt80-DNA complex (MSE VARIANT vA4G) Descriptor: 5'-D(*AP*GP*TP*TP*TP*TP*TP*GP*CP*GP*TP*CP*GP*C)-3', 5'-D(*TP*GP*CP*GP*AP*CP*GP*CP*AP*AP*AP*AP*AP*C)-3', NDT80 protein Authors: Lamoureux, J.S, Glover, J.N. Deposit date: 2005-10-30 Release date: 2006-03-21 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.57 Å) Cite: Principles of Protein-DNA Recognition Revealed in the Structural Analysis of Ndt80-MSE DNA Complexes. Structure, 14, 2006
2EVR	CRYSTAL STRUCTURE OF A PUTATIVE GAMMA-D-GLUTAMYL-L-DIAMINO ACID ENDOPEPTIDASE (NPUN_R0659) FROM NOSTOC PUNCTIFORME PCC 73102 AT 1.60 A RESOLUTION Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, COG0791: Cell wall-associated hydrolases (invasion-associated proteins), ... Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2005-10-31 Release date: 2005-11-22 Last modified: 2023-01-25 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structural Basis of Murein Peptide Specificity of a gamma-D-Glutamyl-L-Diamino Acid Endopeptidase. Structure, 17, 2009
2FDH	Crystal Structure of AlkB in complex with Mn(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T Descriptor: 2-OXOGLUTARIC ACID, 5'-D(P*TP*(MA7)P*T)-3', Alkylated DNA repair protein alkB, ... Authors: Yu, B, Benach, J, Edstrom, W.C, Gibney, B.R, Hunt, J.F, Northeast Structural Genomics Consortium (NESG) Deposit date: 2005-12-14 Release date: 2006-02-21 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structures of catalytic complexes of the oxidative DNA/RNA repair enzyme AlkB. Nature, 439, 2006
2FEA	Crystal structure of MtnX phosphatase from Bacillus Subtilis at 2.00 A resolution Descriptor: 1,2-ETHANEDIOL, 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase, MAGNESIUM ION, ... Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2005-12-15 Release date: 2005-12-27 Last modified: 2023-01-25 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of MtnX phosphatase from Bacillus subtilis at 2.0 A resolution provides a structural basis for bipartite phosphomonoester hydrolysis of 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate. Proteins, 69, 2007
2ERZ	Crystal Structure of c-AMP Dependent Kinase (PKA) bound to hydroxyfasudil Descriptor: 1-(1-HYDROXY-5-ISOQUINOLINESULFONYL)HOMOPIPERAZINE, cAMP-dependent protein kinase inhibitor, alpha form, ... Authors: Jacobs, M. Deposit date: 2005-10-25 Release date: 2005-11-08 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.2 Å) Cite: The Structure of Dimeric ROCK I Reveals the Mechanism for Ligand Selectivity. J.Biol.Chem., 281, 2006
2ETV	Crystal structure of a putative fe(iii) abc transporter (tm0189) from thermotoga maritima msb8 at 1.70 A resolution Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, NICKEL (II) ION, ... Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2005-10-27 Release date: 2006-02-07 Last modified: 2023-01-25 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal structure of IRON(III) ABC transporter, periplasmic iron-binding protein, putative (tm0189) from THERMOTOGA MARITIMA at 1.70 A resolution To be published
2EUV	Principles of protein-DNA recognition revealed in the structural analysis of Ndt80-MSE DNA complexes Descriptor: 5'-D(*AP*GP*TP*AP*TP*TP*TP*GP*TP*GP*TP*TP*GP*C)-3', 5'-D(*TP*GP*CP*AP*AP*CP*AP*CP*AP*AP*AP*TP*AP*C)-3', NDT80 protein Authors: Lamoureux, J.S, Glover, J.N. Deposit date: 2005-10-30 Release date: 2006-03-21 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.94 Å) Cite: Principles of Protein-DNA Recognition Revealed in the Structural Analysis of Ndt80-MSE DNA Complexes. Structure, 14, 2006
2HWO	Crystal structure of Src kinase domain in complex with covalent inhibitor Descriptor: GLYCEROL, N-(4-PHENYLAMINO-QUINAZOLIN-6-YL)-ACRYLAMIDE, Proto-oncogene tyrosine-protein kinase Src Authors: Rauh, D, Blair, J.A, Shokat, K.M. Deposit date: 2006-08-01 Release date: 2007-02-27 Last modified: 2021-10-20 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structure-guided development of affinity probes for tyrosine kinases using chemical genetics. Nat.Chem.Biol., 3, 2007
2HWP	Crystal structure of Src kinase domain in complex with covalent inhibitor PD168393 Descriptor: N-[4-(3-BROMO-PHENYLAMINO)-QUINAZOLIN-6-YL]-ACRYLAMIDE, Proto-oncogene tyrosine-protein kinase Src Authors: Rauh, D, Blair, J.A, Shokat, K.M. Deposit date: 2006-08-01 Release date: 2007-02-27 Last modified: 2021-10-20 Method: X-RAY DIFFRACTION (2.48 Å) Cite: Structure-guided development of affinity probes for tyrosine kinases using chemical genetics. Nat.Chem.Biol., 3, 2007
2EVS	Crystal structure of human Glycolipid Transfer Protein complexed with n-hexyl-beta-D-glucoside Descriptor: DECANE, Glycolipid transfer protein, HEXANE, ... Authors: Malinina, L, Malakhova, M.L, Kanack, A.T, Abagyan, R, Brown, R.E, Patel, D.J. Deposit date: 2005-10-31 Release date: 2006-11-14 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.2 Å) Cite: The liganding of glycolipid transfer protein is controlled by glycolipid acyl structure. Plos Biol., 4, 2006
2EXK	Structure of the family43 beta-Xylosidase E187G from geobacillus stearothermophilus in complex with xylobiose Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, GLYCEROL, ... Authors: Brux, C, Niefind, K, Shallom-Shezifi, D, Shoham, Y, Schomburg, D. Deposit date: 2005-11-08 Release date: 2006-04-04 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.2 Å) Cite: The Structure of an Inverting GH43 beta-Xylosidase from Geobacillus stearothermophilus with its Substrate Reveals the Role of the Three Catalytic Residues. J.Mol.Biol., 359, 2006
2EXJ	Structure of the family43 beta-Xylosidase D128G mutant from geobacillus stearothermophilus in complex with xylobiose Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, GLYCEROL, ... Authors: Brux, C, Niefind, K, Shallom-Shezifi, D, Shoham, Y, Schomburg, D. Deposit date: 2005-11-08 Release date: 2006-04-04 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.2 Å) Cite: The Structure of an Inverting GH43 beta-Xylosidase from Geobacillus stearothermophilus with its Substrate Reveals the Role of the Three Catalytic Residues. J.Mol.Biol., 359, 2006
2HOT	Phage selected homeodomain bound to modified DNA Descriptor: 3-PROP-2-YN-1-YL-1,3-OXAZOLIDIN-2-ONE, 5'-D(*AP*TP*CP*CP*GP*GP*GP*GP*AP*TP*TP*AP*CP*AP*TP*GP*GP*CP*AP*AP*A)-3', 5'-D(*TP*TP*TP*TP*GP*CP*CP*AP*TP*GP*TP*AP*AP*TP*CP*CP*CP*CP*GP*GP*A)-3', ... Authors: Feldman, M.E, Simon, M.D, Shokat, K.M. Deposit date: 2006-07-16 Release date: 2006-12-12 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.19 Å) Cite: Structure and properties of a re-engineered homeodomain protein-DNA interface. Acs Chem.Biol., 1, 2006
2HXA	Crystal structure of Cu(I) Azurin with the metal-binding loop sequence "CTFPGHSALM" replaced with "CSPHQGAGM", at pH3.5 Descriptor: Azurin, COPPER (I) ION Authors: Banfield, M.J. Deposit date: 2006-08-03 Release date: 2007-01-30 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.21 Å) Cite: Engineering Copper Sites in Proteins: Loops Confer Native Structures and Properties to Chimeric Cupredoxins. J.Am.Chem.Soc., 129, 2007
2HX9	Crystal structure of Cu(I) Azurin with the metal-binding loop sequence "CTFPGHSALM" replaced with "CSPHQGAGM", at pH4 Descriptor: Azurin, COPPER (I) ION Authors: Banfield, M.J. Deposit date: 2006-08-03 Release date: 2007-01-30 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Engineering Copper Sites in Proteins: Loops Confer Native Structures and Properties to Chimeric Cupredoxins. J.Am.Chem.Soc., 129, 2007
2HPH	High resolution structure of E. coli glucose/galactose binding protein bound with glucose Descriptor: CALCIUM ION, D-galactose-binding periplasmic protein, beta-D-glucopyranose Authors: Cuneo, M.J, Hellinga, H.W. Deposit date: 2006-07-17 Release date: 2007-03-20 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.33 Å) Cite: High resolution structure of E. coli glucose/galactose binding protein bound with glucose To be Published
2HX8	Crystal structure of Cu(I) Azurin with the metal-binding loop sequence "CTFPGHSALM" replaced with "CSPHQGAGM", at pH5 Descriptor: Azurin, COPPER (I) ION Authors: Banfield, M.J. Deposit date: 2006-08-03 Release date: 2007-01-30 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Engineering Copper Sites in Proteins: Loops Confer Native Structures and Properties to Chimeric Cupredoxins. J.Am.Chem.Soc., 129, 2007

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